On the public citation graph
Single-molecule genome assembly of the Basket Willow, Salix viminalis , reveals earliest stages of sex chromosome expansion
0 signed · 121 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/evl3.60openalex-snapshot
The effects of haploid selection on Y chromosome evolution in two closely related dioecious plants
inferredcites →https://doi.org/10.1007/s00018-012-0999-0openalex-snapshot
Floral meristem initiation and emergence in plants
inferredcites →https://doi.org/10.1007/s00438-018-1473-yopenalex-snapshot
Characterization of a large sex determination region in Salix purpurea L. (Salicaceae)
inferredcites →https://doi.org/10.1007/s11295-014-0782-5openalex-snapshot
Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae)
inferredcites →https://doi.org/10.1016/j.cell.2014.09.052openalex-snapshot
Sequencing the Mouse Y Chromosome Reveals Convergent Gene Acquisition and Amplification on Both Sex Chromosomes
inferredcites →https://doi.org/10.1016/j.cell.2015.10.071openalex-snapshot
Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish
inferredcites →https://doi.org/10.1016/j.cub.2011.07.045openalex-snapshot
Plant Y Chromosome Degeneration Is Retarded by Haploid Purifying Selection
inferredcites →https://doi.org/10.1016/j.molcel.2004.06.002openalex-snapshot
The Compact Chromatin Structure of a Ty Repeated Sequence Suppresses Recombination Hotspot Activity in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1016/j.tig.2011.05.005openalex-snapshot
Are all sex chromosomes created equal?
inferredcites →https://doi.org/10.1016/j.tree.2008.09.010openalex-snapshot
The evolution of restricted recombination in sex chromosomes
inferredcites →https://doi.org/10.1038/hdy.2014.125openalex-snapshot
Single locus sex determination and female heterogamety in the basket willow (Salix viminalis L.)
inferredcites →https://doi.org/10.1038/hdy.2014.95openalex-snapshot
Sex determination in dioecious Mercurialis annua and its close diploid and polyploid relatives
inferredcites →https://doi.org/10.1038/nature09525openalex-snapshot
Fine-scale recombination rate differences between sexes, populations and individuals
inferredcites →https://doi.org/10.1038/nature10341openalex-snapshot
Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry
inferredcites →https://doi.org/10.1038/nature11832openalex-snapshot
A Y-like social chromosome causes alternative colony organization in fire ants
inferredcites →https://doi.org/10.1038/nature12235openalex-snapshot
Reversal of an ancient sex chromosome to an autosome in Drosophila
inferredcites →https://doi.org/10.1038/nature12326openalex-snapshot
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
inferredcites →https://doi.org/10.1038/ncomms14251openalex-snapshot
Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation
inferredcites →https://doi.org/10.1038/ncomms9767openalex-snapshot
The genomics of ecological vicariance in threespine stickleback fish
inferredcites →https://doi.org/10.1038/ng.3430openalex-snapshot
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
inferredcites →https://doi.org/10.1038/ng.3443openalex-snapshot
A supergene determines highly divergent male reproductive morphs in the ruff
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nmeth.4035openalex-snapshot
Phased diploid genome assembly with single-molecule real-time sequencing
inferredcites →https://doi.org/10.1038/nrg3366openalex-snapshot
Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration
inferredcites →https://doi.org/10.1038/s41467-017-01064-8openalex-snapshot
The asparagus genome sheds light on the origin and evolution of a young Y chromosome
inferredcites →https://doi.org/10.1038/s41467-017-01317-6openalex-snapshot
Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma
inferredcites →https://doi.org/10.1038/s41467-018-04380-9openalex-snapshot
Multiple convergent supergene evolution events in mating-type chromosomes
inferredcites →https://doi.org/10.1038/s41467-018-06375-yopenalex-snapshot
Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix
inferredcites →https://doi.org/10.1038/s41477-018-0221-yopenalex-snapshot
Genomic imprinting mediates dosage compensation in a young plant XY system
inferredcites →https://doi.org/10.1038/sj.hdy.6800697openalex-snapshot
Steps in the evolution of heteromorphic sex chromosomes
inferredcites →https://doi.org/10.1038/srep09076openalex-snapshot
Different autosomes evolved into sex chromosomes in the sister genera of Salix and Populus
inferredcites →https://doi.org/10.1046/j.1420-9101.1991.4020259.xopenalex-snapshot
Sex differences in recombination
inferredcites →https://doi.org/10.1073/pnas.0409137102openalex-snapshot
An algorithm for progressive multiple alignment of sequences with insertions
inferredcites →https://doi.org/10.1073/pnas.0902972106openalex-snapshot
Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions
inferredcites →https://doi.org/10.1073/pnas.1207833109openalex-snapshot
Sequencing papaya X and Y h chromosomes reveals molecular basis of incipient sex chromosome evolution
inferredcites →https://doi.org/10.1073/pnas.1319227111openalex-snapshot
Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus
inferredcites →https://doi.org/10.1073/pnas.1508454112openalex-snapshot
Rapid Y degeneration and dosage compensation in plant sex chromosomes
inferredcites →https://doi.org/10.1073/pnas.1701658114openalex-snapshot
Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism
inferredcites →https://doi.org/10.1073/pnas.1932072100openalex-snapshot
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
inferredcites →https://doi.org/10.1073/pnas.44.6.622openalex-snapshot
INTERRACIAL HYBRIDIZATION AND BREAKDOWN OF COADAPTED GENE COMPLEXES IN DROSOPHILA PAULISTORUM AND DROSOPHILA WILLISTONI
inferredcites →https://doi.org/10.1086/283342openalex-snapshot
A Model for the Evolution of Dioecy and Gynodioecy
inferredcites →https://doi.org/10.1093/acprof:oso/9780199657148.001.0001openalex-snapshot
The Evolution of Sex Determination
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btt509openalex-snapshot
Infernal 1.1: 100-fold faster RNA homology searches
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/database/bar009openalex-snapshot
UniProt Knowledgebase: a hub of integrated protein data
inferredcites →https://doi.org/10.1093/gbe/evw172openalex-snapshot
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
inferredcites →https://doi.org/10.1093/gbe/evz001openalex-snapshot
Evolution of Young Sex Chromosomes in Two Dioecious Sister Plant Species with Distinct Sex Determination Systems
inferredcites →https://doi.org/10.1093/genetics/163.2.811openalex-snapshot
The Evolution of Sex Dimorphism in Recombination
inferredcites →https://doi.org/10.1093/genetics/3.5.422openalex-snapshot
GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS
inferredcites →https://doi.org/10.1093/genetics/33.6.588openalex-snapshot
GENETICS OF NATURAL POPULATIONS. XVIII. EXPERIMENTS ON CHROMOSOMES OF DROSOPHILA PSEUDOOBSCURA FROM DIFFERENT GEOGRAPHIC REGIONS
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst035openalex-snapshot
Progressive Recombination Suppression and Differentiation in Recently Evolved Neo-sex Chromosomes
inferredcites →https://doi.org/10.1093/molbev/msw046openalex-snapshot
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
inferredcites →https://doi.org/10.1093/molbev/msx144openalex-snapshot
Recent Sex Chromosome Divergence despite Ancient Dioecy in the Willow Salix viminalis
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot
AUGUSTUS: ab initio prediction of alternative transcripts
inferredcites →https://doi.org/10.1093/nar/gkr944openalex-snapshot
Phytozome: a comparative platform for green plant genomics
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gku104openalex-snapshot
Improved search heuristics find 20 000 new alignments between human and mouse genomes
inferredcites →https://doi.org/10.1093/nar/gku1063openalex-snapshot
Rfam 12.0: updates to the RNA families database
inferredcites →https://doi.org/10.1093/nar/gkw654openalex-snapshot
Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026236openalex-snapshot
Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
inferredcites →https://doi.org/10.1098/rspb.1987.0066openalex-snapshot
On the evolution of sex determination
inferredcites →https://doi.org/10.1098/rspb.2014.2726openalex-snapshot
Sex-chromosome differentiation and ‘sex races’ in the common frog ( Rana temporaria )
inferredcites →https://doi.org/10.1098/rstb.2000.0717openalex-snapshot
The degeneration of Y chromosomes
inferredcites →https://doi.org/10.1101/gr.081612.108openalex-snapshot
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
inferredcites →https://doi.org/10.1101/gr.113985.110openalex-snapshot
Adaptive seeds tame genomic sequence comparison
inferredcites →https://doi.org/10.1101/gr.199448.115openalex-snapshot
A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
inferredcites →https://doi.org/10.1101/gr.214874.116openalex-snapshot
Direct determination of diploid genome sequences
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
inferredcites →https://doi.org/10.1111/evo.12493openalex-snapshot
INDEPENDENT STRATUM FORMATION ON THE AVIAN SEX CHROMOSOMES REVEALS INTER‐CHROMOSOMAL GENE CONVERSION AND PREDOMINANCE OF PURIFYING SELECTION ON THE W CHROMOSOME
inferredcites →https://doi.org/10.1111/evo.12525openalex-snapshot
Sex-chromosome differentiation parallels postglacial range expansion in European tree frogs (Hyla arborea)
inferredcites →https://doi.org/10.1111/gcbb.12280openalex-snapshot
Association mapping in Salix viminalis L. (Salicaceae) – identification of candidate genes associated with growth and phenology
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04482.xopenalex-snapshot
mlRho – a program for estimating the population mutation and recombination rates from shotgun‐sequenced diploid genomes
inferredcites →https://doi.org/10.1111/j.1469-185x.1931.tb01030.xopenalex-snapshot
THE EVOLUTION OF DOMINANCE
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.02807.xopenalex-snapshot
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
inferredcites →https://doi.org/10.1111/j.1558-5646.1953.tb00082.xopenalex-snapshot
INDETERMINATE OUTCOME OF CERTAIN EXPERIMENTS ONDROSOPHILAPOPULATIONS
inferredcites →https://doi.org/10.1111/mec.13126openalex-snapshot
Recent Y chromosome divergence despite ancient origin of dioecy in poplars ( Populus )
inferredcites →https://doi.org/10.1111/mec.13268openalex-snapshot
Homomorphic plant sex chromosomes are coming of age
inferredcites →https://doi.org/10.1111/mec.14466openalex-snapshot
Slow evolution of sex‐biased genes in the reproductive tissue of the dioecious plant Salix viminalis
inferredcites →https://doi.org/10.1126/sciadv.aao5416openalex-snapshot
Parallel evolution of Batesian mimicry supergene in twoPapiliobutterflies,P. polytesandP. memnon
inferredcites →https://doi.org/10.1126/science.1128691openalex-snapshot
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
inferredcites →https://doi.org/10.1126/science.1257225openalex-snapshot
A Y-chromosome–encoded small RNA acts as a sex determinant in persimmons
inferredcites →https://doi.org/10.1126/science.286.5441.964openalex-snapshot
Four Evolutionary Strata on the Human X Chromosome
inferredcites →https://doi.org/10.1126/science.aac8370openalex-snapshot
A cucurbit androecy gene reveals how unisexual flowers develop and dioecy emerges
inferredcites →https://doi.org/10.1134/s1021443713050063openalex-snapshot
The involvement of phytohormones in the plant sex regulation
inferredcites →https://doi.org/10.1146/annurev-arplant-042110-103914openalex-snapshot
Sex Chromosomes in Land Plants
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/1751-0473-9-13openalex-snapshot
biobambam: tools for read pair collation based algorithms on BAM files
inferredcites →https://doi.org/10.1186/s12864-017-3634-5openalex-snapshot
Allelic incompatibility can explain female biased sex ratios in dioecious plants
inferredcites →https://doi.org/10.1186/s13742-015-0076-3openalex-snapshot
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
inferredcites →https://doi.org/10.1242/dev.133645openalex-snapshot
CLAVATA-WUSCHEL signaling in the shoot meristem
inferredcites →https://doi.org/10.1371/journal.pbio.0030004openalex-snapshot
A Gradual Process of Recombination Restriction in the Evolutionary History of the Sex Chromosomes in Dioecious Plants
inferredcites →https://doi.org/10.1371/journal.pbio.0030063openalex-snapshot
Recombination Difference between Sexes: A Role for Haploid Selection
inferredcites →https://doi.org/10.1371/journal.pbio.1001643openalex-snapshot
Comparative Sex Chromosome Genomics in Snakes: Differentiation, Evolutionary Strata, and Lack of Global Dosage Compensation
inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot
Sex Determination: Why So Many Ways of Doing It?
inferredcites →https://doi.org/10.1371/journal.pbio.2006062openalex-snapshot
Repeated translocation of a gene cassette drives sex-chromosome turnover in strawberries
inferredcites →https://doi.org/10.1371/journal.pgen.1003732openalex-snapshot
Meiotic Recombination Initiation in and around Retrotransposable Elements in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1371/journal.pgen.1004365openalex-snapshot
Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.1534/g3.111.000539openalex-snapshot
Polymorphism and Divergence in Two Willow Species,Salix viminalisL. andSalix schweriniiE. Wolf
inferredcites →https://doi.org/10.1534/g3.112.003749openalex-snapshot
SlWUS1; An X-linked Gene Having No Homologous Y-Linked Copy inSilene latifolia
inferredcites →https://doi.org/10.1534/genetics.106.070110openalex-snapshot
Evolutionary Strata on the X Chromosomes of the Dioecious Plant Silene latifolia: Evidence From New Sex-Linked Genes
inferredcites →https://doi.org/10.1534/genetics.113.150755openalex-snapshot
Expansion of the Pseudo-autosomal Region and Ongoing Recombination Suppression in the Silene latifolia Sex Chromosomes
inferredcites →https://doi.org/10.1534/genetics.119.302045openalex-snapshot
Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua
inferredcites →https://doi.org/10.2307/1312947openalex-snapshot
Evolution of the Y Sex Chromosome in Animals
inferredcites →https://doi.org/10.2307/2405731openalex-snapshot
Indeterminate Outcome of Certain Experiments on Drosophila Populations
inferredcites →https://doi.org/10.3389/fpls.2015.01030openalex-snapshot
Evolution of Catkins: Inflorescence Morphology of Selected Salicaceae in an Evolutionary and Developmental Context
inferredcites →https://doi.org/10.3390/genes9060277openalex-snapshot
Size and Content of the Sex-Determining Region of the Y Chromosome in Dioecious Mercurialis annua, a Plant with Homomorphic Sex Chromosomes
inferredcites →https://doi.org/10.5281/zenodo.10742832openalex-snapshot
Genetics of the Evolutionary Process.
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41477-020-0672-9openalex-snapshot
A single gene underlies the dynamic evolution of poplar sex determination
inferred← citeshttps://doi.org/10.1101/2020.03.23.003558openalex-snapshot
The evolution of suppressed recombination between sex chromosomes by chromosomal inversions
inferred← citeshttps://doi.org/10.1186/s12915-020-00808-1openalex-snapshot
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.