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The genomics of ecological vicariance in threespine stickleback fish

https://doi.org/10.1038/ncomms9767
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s11692-015-9327-6openalex-snapshot
Lake-Stream Divergence in Stickleback Life History: A Plastic Response to Trophic Niche Differentiation?
inferredcites →https://doi.org/10.1016/j.ajhg.2014.09.002openalex-snapshot
Widespread Signals of Convergent Adaptation to High Altitude in Asia and America
inferredcites →https://doi.org/10.1016/j.tig.2012.03.009openalex-snapshot
The genomics of speciation-with-gene-flow
inferredcites →https://doi.org/10.1016/j.tree.2007.09.008openalex-snapshot
Adaptation from standing genetic variation
inferredcites →https://doi.org/10.1016/j.tree.2007.09.011openalex-snapshot
Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?
inferredcites →https://doi.org/10.1016/s0169-5347(01)02187-5openalex-snapshot
Chromosomal rearrangements and speciation
inferredcites →https://doi.org/10.1038/hdy.1986.135openalex-snapshot
The barrier to genetic exchange between hybridising populations
inferredcites →https://doi.org/10.1038/nature01140openalex-snapshot
Detecting recent positive selection in the human genome from haplotype structure
inferredcites →https://doi.org/10.1038/nature10944openalex-snapshot
The genomic basis of adaptive evolution in threespine sticklebacks
inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot
The genic view of the process of speciation
inferredcites →https://doi.org/10.1073/pnas.1219381110openalex-snapshot
Genomic rearrangements and the evolution of clusters of locally adaptive loci
inferredcites →https://doi.org/10.1074/jbc.m111.220046openalex-snapshot
Collagen XXIII, Novel Ligand for Integrin α2β1 in the Epidermis
inferredcites →https://doi.org/10.1080/10635150590923317openalex-snapshot
Intraspecific Variability and Timing in Ancestral Ecology Reconstruction: A Test Case from the Cape Flora
inferredcites →https://doi.org/10.1086/319501openalex-snapshot
A New Statistical Method for Haplotype Reconstruction from Population Data
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/bts115openalex-snapshot
rehh : an R package to detect footprints of selection in genome-wide SNP data from haplotype structure
inferredcites →https://doi.org/10.1093/bioinformatics/btt763openalex-snapshot
DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/czoolo/59.1.72openalex-snapshot
The geography of introgression in a patchy environment and the thorn in the side of ecological speciation
inferredcites →https://doi.org/10.1093/genetics/146.2.695openalex-snapshot
Recombination and Gene Flux Caused by Gene Conversion and Crossing Over in Inversion Heterokaryotypes
inferredcites →https://doi.org/10.1093/genetics/21.5.554openalex-snapshot
THE RELATIONS OF INVERSIONS IN THE X CHROMOSOME OF DROSOPHILA MELANOGASTER TO CROSSING OVER AND DISJUNCTION
inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot
jModelTest: Phylogenetic Model Averaging
inferredcites →https://doi.org/10.1093/oso/9780198577287.001.0001openalex-snapshot
The Evolutionary Biology of the Threespine Stickleback
inferredcites →https://doi.org/10.1093/oso/9780198577287.003.0009openalex-snapshot
Predators and Morphological Evolution in Threespine Stickleback
inferredcites →https://doi.org/10.1098/rspb.2012.2146openalex-snapshot
The probability of genetic parallelism and convergence in natural populations
inferredcites →https://doi.org/10.1098/rspb.2014.0012openalex-snapshot
Rapid parallel evolution of standing variation in a single, complex, genomic region is associated with life history in steelhead/rainbow trout
inferredcites →https://doi.org/10.1098/rstb.2009.0219openalex-snapshot
Genome-wide scans for footprints of natural selection
inferredcites →https://doi.org/10.1098/rstb.2011.0246openalex-snapshot
Coalescent patterns for chromosomal inversions in divergent populations
inferredcites →https://doi.org/10.1111/evo.12075openalex-snapshot
THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING
inferredcites →https://doi.org/10.1111/evo.12081openalex-snapshot
THE LOCI OF REPEATED EVOLUTION: A CATALOG OF GENETIC HOTSPOTS OF PHENOTYPIC VARIATION
inferredcites →https://doi.org/10.1111/evo.12390openalex-snapshot
GENETIC ARCHITECTURE OF SKELETAL EVOLUTION IN EUROPEAN LAKE AND STREAM STICKLEBACK
inferredcites →https://doi.org/10.1111/j.1365-2583.2007.00764.xopenalex-snapshot
Genetic exchange in 2La inversion heterokaryotypes of Anopheles gambiae
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04781.xopenalex-snapshot
Hybridization between distant lineages increases adaptive variation during a biological invasion: stickleback in Switzerland
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04858.xopenalex-snapshot
Constraints on speciation suggested by comparing lake‐stream stickleback divergence across two continents
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05509.xopenalex-snapshot
Genome divergence during evolutionary diversification as revealed in replicate lake–stream stickleback population pairs
inferredcites →https://doi.org/10.1111/j.1558-5646.1978.tb04617.xopenalex-snapshot
GEOGRAPHIC VARIATION, SPECIATION, AND CLINES
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00662.xopenalex-snapshot
LEARNING ABOUT MODES OF SPECIATION BY COMPUTATIONAL APPROACHES
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00943.xopenalex-snapshot
THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.00943.xopenalex-snapshot
THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01050.xopenalex-snapshot
THE DISTINCTIVE FOOTPRINTS OF LOCAL HITCHHIKING IN A VARIED ENVIRONMENT AND GLOBAL HITCHHIKING IN A SUBDIVIDED POPULATION
inferredcites →https://doi.org/10.1111/mec.12322openalex-snapshot
Recombination in the threespine stickleback genome—patterns and consequences
inferredcites →https://doi.org/10.1111/mec.12693openalex-snapshot
Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics
inferredcites →https://doi.org/10.1111/mec.12720openalex-snapshot
The genomic signature of parallel adaptation from shared genetic variation
inferredcites →https://doi.org/10.1111/mec.12750openalex-snapshot
Theoretical models of the influence of genomic architecture on the dynamics of speciation
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.12883openalex-snapshot
Do the same genes underlie parallel phenotypic divergence in different L ittorina saxatilis populations?
inferredcites →https://doi.org/10.1126/science.1107239openalex-snapshot
Widespread Parallel Evolution in Sticklebacks by Repeated Fixation of Ectodysplasin Alleles
inferredcites →https://doi.org/10.1126/science.1124309openalex-snapshot
Positive Natural Selection in the Human Lineage
inferredcites →https://doi.org/10.1126/science.1252136openalex-snapshot
Stick Insect Genomes Reveal Natural Selection’s Role in Parallel Speciation
inferredcites →https://doi.org/10.1186/1471-2148-12-94openalex-snapshot
Uninformative polymorphisms bias genome scans for signatures of selection
inferredcites →https://doi.org/10.1371/journal.pbio.0040072openalex-snapshot
A Map of Recent Positive Selection in the Human Genome
inferredcites →https://doi.org/10.1371/journal.pbio.0050171openalex-snapshot
A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1000862openalex-snapshot
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
inferredcites →https://doi.org/10.1371/journal.pgen.1002127openalex-snapshot
Parallel Adaptive Divergence among Geographically Diverse Human Populations
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0036133openalex-snapshot
A Quasi-Exclusive European Ancestry in the Senepol Tropical Cattle Breed Highlights the Importance of the slick Locus in Tropical Adaptation
inferredcites →https://doi.org/10.1371/journal.pone.0050620openalex-snapshot
Repeated Lake-Stream Divergence in Stickleback Life History within a Central European Lake Basin
inferredcites →https://doi.org/10.1534/genetics.105.041947openalex-snapshot
Mechanisms of Genetic Exchange Within the Chromosomal Inversions of Drosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.108.089409openalex-snapshot
Correlation-Based Inference for Linkage Disequilibrium With Multiple Alleles
inferredcites →https://doi.org/10.1534/genetics.108.092221openalex-snapshot
A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
inferredcites →https://doi.org/10.18637/jss.v016.c03openalex-snapshot
LDheatmap : An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
inferredcites →https://doi.org/10.18637/jss.v016.i02openalex-snapshot
hapassoc: Software for Likelihood Inference of Trait Associations with SNP Haplotypes and Other Attributes
inferredcites →https://doi.org/10.2307/5902openalex-snapshot
The Evolutionary Biology of the Threespine Stickleback
inferredcites →https://doi.org/10.7554/elife.05290openalex-snapshot
A recurrent regulatory change underlying altered expression and Wnt response of the stickleback armor plates gene EDA

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Intra-lake origin and rapid expansion of invasive pelagic three-spined stickleback in Lake Constance
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The puzzling phylogeography of the haplochromine cichlid fishAstatotilapia burtoni
inferred← citeshttps://doi.org/10.1002/ece3.71153openalex-snapshot
Population Genetic Structure of Three‐Spined Sticklebacks in the St. Lawrence: A Gradient of Change
inferred← citeshttps://doi.org/10.1002/ece3.7158openalex-snapshot
Among‐individual diet variation within a lake trout ecotype: Lack of stability of niche use
inferred← citeshttps://doi.org/10.1002/ece3.8898openalex-snapshot
A chromosomal inversion may facilitate adaptation despite periodic gene flow in a freshwater fish
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Interpreting differentiation landscapes in the light of long-term linked selection
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Genetic variation for adaptive traits is associated with polymorphic inversions in Littorina saxatilis
inferred← citeshttps://doi.org/10.1002/evl3.37openalex-snapshot
Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations
inferred← citeshttps://doi.org/10.1002/evl3.99openalex-snapshot
Predictable genome-wide sorting of standing genetic variation during parallel adaptation to basic versus acidic environments in stickleback fish
inferred← citeshttps://doi.org/10.1002/fee.2404openalex-snapshot
Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools
inferred← citeshttps://doi.org/10.1007/13836_2018_24openalex-snapshot
Population Genomics of Speciation and Admixture
inferred← citeshttps://doi.org/10.1007/13836_2018_62openalex-snapshot
Clinal Adaptation in the Marine Environment
inferred← citeshttps://doi.org/10.1007/13836_2019_67openalex-snapshot
The Population Genomics of Parallel Adaptation: Lessons from Threespine Stickleback
inferred← citeshttps://doi.org/10.1007/978-3-319-41324-2_11openalex-snapshot
On the Neo-Sex Chromosomes of Lepidoptera
inferred← citeshttps://doi.org/10.1007/s10750-017-3479-6openalex-snapshot
Impact of the invasive three-spined stickleback (Gasterosteus aculeatus) on relative abundance and growth of native pelagic whitefish (Coregonus wartmanni) in Upper Lake Constance
inferred← citeshttps://doi.org/10.1007/s40610-019-00120-0openalex-snapshot
Recent Advances in the Inference of Gene Flow from Population Genomic Data
inferred← citeshttps://doi.org/10.1016/j.cbd.2017.10.006openalex-snapshot
Divergence of insulin superfamily ligands, receptors and Igf binding proteins in marine versus freshwater stickleback: Evidence of selection in known and novel genes
inferred← citeshttps://doi.org/10.1016/j.fishres.2018.02.014openalex-snapshot
Foraging habits of invasive three-spined sticklebacks (Gasterosteus aculeatus) – impacts on fisheries yield in Upper Lake Constance
inferred← citeshttps://doi.org/10.1016/j.tree.2019.02.013openalex-snapshot
Aquatic Landscape Genomics and Environmental Effects on Genetic Variation
inferred← citeshttps://doi.org/10.1016/j.tree.2025.11.011openalex-snapshot
Genomic insights into the origin of ecotypes
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Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
inferred← citeshttps://doi.org/10.1038/nrg.2016.133openalex-snapshot
Making sense of genomic islands of differentiation in light of speciation
inferred← citeshttps://doi.org/10.1038/s41437-025-00784-8openalex-snapshot
Experimental test of the fitness effects of divergent marine–freshwater chromosomal inversions in stickleback under different salinity conditions
inferred← citeshttps://doi.org/10.1038/s41467-017-00256-6openalex-snapshot
Adaptive and non-adaptive divergence in a common landscape
inferred← citeshttps://doi.org/10.1038/s41467-019-12182-wopenalex-snapshot
Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback
inferred← citeshttps://doi.org/10.1038/s41467-020-15657-3openalex-snapshot
Genomic release-recapture experiment in the wild reveals within-generation polygenic selection in stickleback fish
inferred← citeshttps://doi.org/10.1038/s41467-021-23092-1openalex-snapshot
Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin
inferred← citeshttps://doi.org/10.1038/s41467-021-23096-xopenalex-snapshot
Reply to “Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin”
inferred← citeshttps://doi.org/10.1038/s41467-021-25039-yopenalex-snapshot
Clinal genomic analysis reveals strong reproductive isolation across a steep habitat transition in stickleback fish
inferred← citeshttps://doi.org/10.1038/s41467-022-32546-zopenalex-snapshot
The combination of genomic offset and niche modelling provides insights into climate change-driven vulnerability
inferred← citeshttps://doi.org/10.1038/s41467-024-54534-1openalex-snapshot
Testing the evolutionary theory of inversion polymorphisms in the yellow monkeyflower (Mimulus guttatus)
inferred← citeshttps://doi.org/10.1038/s41559-020-01341-8openalex-snapshot
Intercontinental genomic parallelism in multiple three-spined stickleback adaptive radiations
inferred← citeshttps://doi.org/10.1038/s41559-020-1222-6openalex-snapshot
On the causes of geographically heterogeneous parallel evolution in sticklebacks
inferred← citeshttps://doi.org/10.1073/pnas.2410324121openalex-snapshot
Microevolutionary change in wild stickleback: Using integrative time-series data to infer responses to selection
inferred← citeshttps://doi.org/10.1073/pnas.2612038123openalex-snapshot
Disentangling unique site-specific and shared habitat-level adaptation in a classic system of repeated evolution
inferred← citeshttps://doi.org/10.1086/736845openalex-snapshot
On Measurements of Phenotypic Parallel Evolution
inferred← citeshttps://doi.org/10.1093/bioinformatics/btv717openalex-snapshot
Fitchi: haplotype genealogy graphs based on the Fitch algorithm
inferred← citeshttps://doi.org/10.1093/biolinnean/bly063openalex-snapshot
What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species
inferred← citeshttps://doi.org/10.1093/evolinnean/kzae031openalex-snapshot
Ecological speciation in East African freshwater crabs of the genus Arcopotamonautes Bott, 1955 across a lake–river boundary in the Lake Malawi catchment (Potamoidea: Potamonautidae: Potamonatinae)
inferred← citeshttps://doi.org/10.1093/evolut/qpac025openalex-snapshot
Repeated genetic divergence plays a minor role in repeated phenotypic divergence of lake-stream stickleback
inferred← citeshttps://doi.org/10.1093/evolut/qpad067openalex-snapshot
Lacustrine speciation associated with chromosomal inversion in a lineage of riverine fishes
inferred← citeshttps://doi.org/10.1093/g3journal/jkac077openalex-snapshot
The ectodysplasin-A receptor is a candidate gene for lateral plate number variation in stickleback fish
inferred← citeshttps://doi.org/10.1093/g3journal/jkag086openalex-snapshot
The genomic architecture of local adaptation in two connected populations of three-spined stickleback
inferred← citeshttps://doi.org/10.1093/gbe/evx067openalex-snapshot
Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations
inferred← citeshttps://doi.org/10.1093/gbe/evx215openalex-snapshot
Genomic Changes Associated with Reproductive and Migratory Ecotypes in Sockeye Salmon (Oncorhynchus nerka)
inferred← citeshttps://doi.org/10.1093/gbe/evz090openalex-snapshot
Divergent Fine-Scale Recombination Landscapes between a Freshwater and Marine Population of Threespine Stickleback Fish
inferred← citeshttps://doi.org/10.1093/gbe/evz101openalex-snapshot
Parallel Molecular Evolution in Pathways, Genes, and Sites in High-Elevation Hummingbirds Revealed by Comparative Transcriptomics
inferred← citeshttps://doi.org/10.1093/gbe/evz175openalex-snapshot
Architecture of Parallel Adaptation in Ten Lacustrine Threespine Stickleback Populations from the White Sea Area
inferred← citeshttps://doi.org/10.1093/jhered/esx080openalex-snapshot
Genomic Signatures of Sexual Conflict
inferred← citeshttps://doi.org/10.1093/jhered/esz056openalex-snapshot
Repeatability of Adaptive Radiation Depends on Spatial Scale: Regional Versus Global Replicates of Stickleback in Lake Versus Stream Habitats
inferred← citeshttps://doi.org/10.1093/molbev/msaa098openalex-snapshot
A Whole-Genome Scan for Association with Invasion Success in the Fruit Fly Drosophila suzukii Using Contrasts of Allele Frequencies Corrected for Population Structure
inferred← citeshttps://doi.org/10.1093/molbev/msab207openalex-snapshot
Highly Replicated Evolution of Parapatric Ecotypes
inferred← citeshttps://doi.org/10.1093/molbev/msab358openalex-snapshot
Chromosomal Fusions Facilitate Adaptation to Divergent Environments in Threespine Stickleback
inferred← citeshttps://doi.org/10.1093/molbev/msad192openalex-snapshot
De Novo Mutation Rates in Sticklebacks
inferred← citeshttps://doi.org/10.1093/molbev/msz161openalex-snapshot
Admixture between Ancient Lineages, Selection, and the Formation of Sympatric Stickleback Species-Pairs
inferred← citeshttps://doi.org/10.1093/zoolinnean/zly007openalex-snapshot
Detecting signatures of positive selection in non-model species using genomic data
inferred← citeshttps://doi.org/10.1098/rspb.2023.2617openalex-snapshot
Parallel evolution despite low genetic diversity in three-spined sticklebacks
inferred← citeshttps://doi.org/10.1098/rstb.2025.0028openalex-snapshot
Genomic landscape underlying pituitary epigenome divergence between stickleback ecotypes
inferred← citeshttps://doi.org/10.1101/052761openalex-snapshot
Going down the rabbit hole: a review on methods characterizing selection and demography in natural populations
inferred← citeshttps://doi.org/10.1101/167981openalex-snapshot
Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations
inferred← citeshttps://doi.org/10.1101/2021.10.02.462884openalex-snapshot
Genetic basis of body shape variation along the benthic-pelagic axis in cichlid fishes
inferred← citeshttps://doi.org/10.1101/2022.08.09.503380openalex-snapshot
Cellular profiling of a recently-evolved social behavior
inferred← citeshttps://doi.org/10.1101/2023.01.10.523267openalex-snapshot
Origin Matters: Using a Local Reference Genome Improves Measures in Population Genomics
inferred← citeshttps://doi.org/10.1101/2025.01.15.633256openalex-snapshot
Inversions Dominate Evolution in the Highly Admixed European Sardine ( Sardina pilchardus )
inferred← citeshttps://doi.org/10.1101/589804openalex-snapshot
Single-molecule genome assembly of the Basket Willow, Salix viminalis , reveals earliest stages of sex chromosome expansion
inferred← citeshttps://doi.org/10.1101/782201openalex-snapshot
Standing genetic variation and chromosomal rearrangements facilitate local adaptation in a marine fish
inferred← citeshttps://doi.org/10.1101/800904openalex-snapshot
Structural genomic variation leads to unexpected genetic differentiation in Lake Tanganyika’s sardines
inferred← citeshttps://doi.org/10.1111/1755-0998.12634openalex-snapshot
rehh 2.0: a reimplementation of the R package rehh to detect positive selection from haplotype structure
inferred← citeshttps://doi.org/10.1111/1755-0998.12635openalex-snapshot
Breaking RAD: an evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation
inferred← citeshttps://doi.org/10.1111/1755-0998.12649openalex-snapshot
RAD seq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)
inferred← citeshttps://doi.org/10.1111/1755-0998.12669openalex-snapshot
Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations
inferred← citeshttps://doi.org/10.1111/1755-0998.13172openalex-snapshot
Genome‐wide association analyses based on whole‐genome sequencing of Protosalanx hyalocranius provide insights into sex determination of Salangid fishes
inferred← citeshttps://doi.org/10.1111/1755-0998.13838openalex-snapshot
Origin matters: Using a local reference genome improves measures in population genomics
inferred← citeshttps://doi.org/10.1111/dgd.12576openalex-snapshot
Parallel transcriptome evolution in stream threespine sticklebacks
inferred← citeshttps://doi.org/10.1111/evo.13110openalex-snapshot
Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback
inferred← citeshttps://doi.org/10.1111/evo.13606openalex-snapshot
Genomic data reject the hypothesis of sympatric ecological speciation in a clade of Desmognathus salamanders
inferred← citeshttps://doi.org/10.1111/evo.14490openalex-snapshot
Genomic changes underlying repeated niche shifts in an adaptive radiation
inferred← citeshttps://doi.org/10.1111/jeb.12817openalex-snapshot
Fitness differences between parapatric lake and stream stickleback revealed by a field transplant
inferred← citeshttps://doi.org/10.1111/jeb.12978openalex-snapshot
Assessing reproductive isolation using a contact zone between parapatric lake‐stream stickleback ecotypes
inferred← citeshttps://doi.org/10.1111/jeb.13016openalex-snapshot
Sexual isolation promotes divergence between parapatric lake and stream stickleback
inferred← citeshttps://doi.org/10.1111/jeb.13047openalex-snapshot
Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
inferred← citeshttps://doi.org/10.1111/jeb.13705openalex-snapshot
Genetic and morphological divergence between Littorina fabalis ecotypes in Northern Europe
inferred← citeshttps://doi.org/10.1111/jfb.13336openalex-snapshot
Non‐parallel divergence across freshwater and marine three‐spined sticklebackGasterosteus aculeatuspopulations
inferred← citeshttps://doi.org/10.1111/mec.13645openalex-snapshot
Geographic cline analysis as a tool for studying genome‐wide variation: a case study of pollinator‐mediated divergence in a monkeyflower
inferred← citeshttps://doi.org/10.1111/mec.13664openalex-snapshot
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
inferred← citeshttps://doi.org/10.1111/mec.13767openalex-snapshot
Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika
inferred← citeshttps://doi.org/10.1111/mec.13774openalex-snapshot
Genomic landscape of early ecological speciation initiated by selection on nuptial colour
inferred← citeshttps://doi.org/10.1111/mec.13888openalex-snapshot
Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole‐genome sequencing
inferred← citeshttps://doi.org/10.1111/mec.13922openalex-snapshot
Population structure and local selection yield high genomic variation in Mimulus guttatus
inferred← citeshttps://doi.org/10.1111/mec.13933openalex-snapshot
Genomic islands of divergence linked to ecotypic variation in sockeye salmon
inferred← citeshttps://doi.org/10.1111/mec.14195openalex-snapshot
Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa
inferred← citeshttps://doi.org/10.1111/mec.14207openalex-snapshot
Genome architecture enables local adaptation of Atlantic cod despite high connectivity
inferred← citeshttps://doi.org/10.1111/mec.14226openalex-snapshot
Gene flow and selection interact to promote adaptive divergence in regions of low recombination
inferred← citeshttps://doi.org/10.1111/mec.14248openalex-snapshot
Demography and genome divergence of lake and stream populations of an East African cichlid fish
inferred← citeshttps://doi.org/10.1111/mec.14373openalex-snapshot
Genomics of adaptive divergence with chromosome‐scale heterogeneity in crossover rate
inferred← citeshttps://doi.org/10.1111/mec.14699openalex-snapshot
Meta‐analysis of chromosome‐scale crossover rate variation in eukaryotes and its significance to evolutionary genomics
inferred← citeshttps://doi.org/10.1111/mec.14782openalex-snapshot
Genomic parallelism and lack thereof in contrasting systems of three‐spined sticklebacks
inferred← citeshttps://doi.org/10.1111/mec.14944openalex-snapshot
Chromosomal inversions associated with environmental adaptation in honeybees
inferred← citeshttps://doi.org/10.1111/mec.15255openalex-snapshot
Widespread intersex differentiation across the stickleback genome – The signature of sexually antagonistic selection?
inferred← citeshttps://doi.org/10.1111/mec.15559openalex-snapshot
Structural genomic variation leads to genetic differentiation in Lake Tanganyika's sardines
inferred← citeshttps://doi.org/10.1111/mec.15861openalex-snapshot
Using replicate hybrid zones to understand the genomic basis of adaptive divergence
inferred← citeshttps://doi.org/10.1111/mec.16087openalex-snapshot
Adaptive and nonadaptive causes of heterogeneity in genetic differentiation across the Mimulus guttatus genome
inferred← citeshttps://doi.org/10.1111/mec.16269openalex-snapshot
The maintenance of standing genetic variation: Gene flow vs. selective neutrality in Atlantic stickleback fish
inferred← citeshttps://doi.org/10.1111/mec.16472openalex-snapshot
Comparative linkage mapping uncovers recombination suppression across massive chromosomal inversions associated with local adaptation in Atlantic silversides
inferred← citeshttps://doi.org/10.1111/mec.16609openalex-snapshot
Chromosomal inversions can limit adaptation to new environments
inferred← citeshttps://doi.org/10.1111/mec.16977openalex-snapshot
Genetic basis of ecologically relevant body shape variation among four genera of cichlid fishes
inferred← citeshttps://doi.org/10.1111/mec.17365openalex-snapshot
Genomic landscapes of divergence among island bird populations: Evidence of parallel adaptation but at different loci?
inferred← citeshttps://doi.org/10.1111/mec.17574openalex-snapshot
Population Genomics of Adaptive Radiation
inferred← citeshttps://doi.org/10.1111/mec.17776openalex-snapshot
Putting Structural Variants Into Practice: The Role of Chromosomal Inversions in the Management of Marine Environments
inferred← citeshttps://doi.org/10.1111/mec.70027openalex-snapshot
Inversions Dominate Evolution in the European Sardine ( Sardina pilchardus ) Amid Strong Gene Flow
inferred← citeshttps://doi.org/10.1111/mec.70249openalex-snapshot
Shared and Unique Patterns of Genomic Differentiation and Introgression Between Japanese Stickleback Species Across Three Sympatric Sites
inferred← citeshttps://doi.org/10.1111/mec.70510openalex-snapshot
Hybridization but Minimal Introgression: Ecologically‐Based Divergent Selection Maintains a Steep Hybrid Zone in Parapatric Stickleback Fish
inferred← citeshttps://doi.org/10.1139/cjfas-2020-0374openalex-snapshot
Approaches and research needs for advancing the protection and recovery of imperilled freshwater fishes and mussels in Canada1
inferred← citeshttps://doi.org/10.1139/facets-2023-0045openalex-snapshot
Characterizing contemporary evolutionary change in a recently isolated population of threespine stickleback (Gasterosteus aculeatus L.)
inferred← citeshttps://doi.org/10.1146/annurev-genom-111720-081402openalex-snapshot
Threespine Stickleback: A Model System For Evolutionary Genomics
inferred← citeshttps://doi.org/10.1186/s12915-019-0731-8openalex-snapshot
The round goby genome provides insights into mechanisms that may facilitate biological invasions
inferred← citeshttps://doi.org/10.1186/s12915-020-00808-1openalex-snapshot
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
inferred← citeshttps://doi.org/10.1266/ggs.15-00082openalex-snapshot
Toward conservation of genetic and phenotypic diversity in Japanese sticklebacks
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005887openalex-snapshot
Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007358openalex-snapshot
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
inferred← citeshttps://doi.org/10.1534/g3.116.033241openalex-snapshot
Regulatory Architecture of Gene Expression Variation in the Threespine Stickleback Gasterosteus aculeatus
inferred← citeshttps://doi.org/10.1534/genetics.119.302261openalex-snapshot
Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes
inferred← citeshttps://doi.org/10.20944/preprints202005.0428.v1openalex-snapshot
Speciation in Stickleback Facilitated by Admixture – Where is the Evidence?
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1092984/v1openalex-snapshot
Balancing Selection in Structured Populations of Three-Spined Sticklebacks
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1092984/v2openalex-snapshot
Systematic genome scans reveal common population-specific signals of balancing selection
inferred← citeshttps://doi.org/10.32942/x2861jopenalex-snapshot
Microevolutionary change in wild stickleback: using integrative time-series data to infer responses to selection
inferred← citeshttps://doi.org/10.3389/fevo.2020.611672openalex-snapshot
Threespine Stickleback in Lake Constance: The Ecology and Genomic Substrate of a Recent Invasion
inferred← citeshttps://doi.org/10.3389/fevo.2022.819894openalex-snapshot
Interactions With Plant Defences Isolate Sympatric Populations of an Herbivorous Mite
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1479670openalex-snapshot
Biotic and abiotic properties mediating sediment microbial diversity and function in a river–lake continuum
inferred← citeshttps://doi.org/10.3390/d12120483openalex-snapshot
Development of Novel SNP Assays for Genetic Analysis of Rare Minnow (Gobiocypris rarus) in a Successive Generation Closed Colony
inferred← citeshttps://doi.org/10.3390/genes10040308openalex-snapshot
Allele Frequency Difference AFD–An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation
inferred← citeshttps://doi.org/10.3390/genes13030541openalex-snapshot
Demographic Reconstruction of Antarctic Fur Seals Supports the Krill Surplus Hypothesis
inferred← citeshttps://doi.org/10.3390/genes9060298openalex-snapshot
Varied Genomic Responses to Maladaptive Gene Flow and Their Evidence
inferred← citeshttps://doi.org/10.6084/m9.figshare.12593177openalex-snapshot
Additional file 1 of Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
inferred← citeshttps://doi.org/10.70675/0fdb431bz1d8cz4ae5zb22ezee894e331c0eopenalex-snapshot
Réponses adaptatives chez Drosophila suzukii, une espèce généraliste envahissante
inferred← citeshttps://doi.org/10.70675/81813a3dz2c65z4dd3za3c5zbba963081c73openalex-snapshot
Influence des variations spatio-temporelles de l’environnement sur la distribution actuelle de la diversité génétique des populations
inferred← citeshttps://doi.org/10.70675/979b8521z416ez4ee9z84f5z361713d7ff2fopenalex-snapshot
Genome admixture with massive mitochondrial DNA introgression in hares (Lepus spp.) : the relative roles of demography and natural selection.
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