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Defining composition and function of the rhizosphere microbiota of barley genotypes exposed to growth-limiting nitrogen supplies
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Nitrogen availability alters rhizosphere processes mediating soil organic matter mineralisation
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The Importance of the Microbial N Cycle in Soil for Crop Plant Nutrition
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Plant–Microbiota Interactions as a Driver of the Mineral Turnover in the Rhizosphere
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Loss in soil microbial diversity constrains microbiome selection and alters the abundance of N-cycling guilds in barley rhizosphere
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Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
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Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
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Microbiota and Host Nutrition across Plant and Animal Kingdoms
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The plant microbiota: composition, functions, and engineering
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Nuclear and Genome Dynamics in Multinucleate Ascomycete Fungi
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Evolutionary Insights into the Nature of Plant Domestication
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Rhizosphere priming can promote mobilisation of N-rich compounds from soil organic matter
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Barley genotype influences stabilization of rhizodeposition-derived C and soil organic matter mineralization
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Role of the Gram-Negative Envelope Stress Response in the Presence of Antimicrobial Agents
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Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
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Uptake and transport of organic and inorganic nitrogen by arbuscular mycorrhizal fungi
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UniFrac: an effective distance metric for microbial community comparison
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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Solutions for a cultivated planet
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Rhizosphere microbiome structure alters to enable wilt resistance in tomato
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Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
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Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley
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Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota
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Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean
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inferredcites →https://doi.org/10.1038/s41467-018-05122-7openalex-snapshot
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
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Nucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling
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Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics
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Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation
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The plant NADPH oxidase RBOHD is required for microbiota homeostasis in leaves
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New insights from uncultivated genomes of the global human gut microbiome
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NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice
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Genomic features of bacterial adaptation to plants
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Molecular phenomics and metagenomics of hepatic steatosis in non-diabetic obese women
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A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota
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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
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Importance of rhizodeposition in the coupling of plant and microbial productivity
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A high-resolution assessment on global nitrogen flows in cropland
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Substantial nitrogen acquisition by arbuscular mycorrhizal fungi from organic material has implications for N cycling
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Global food demand and the sustainable intensification of agriculture
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Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
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Structure, variation, and assembly of the root-associated microbiomes of rice
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Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities
inferredcites →https://doi.org/10.1073/pnas.1717617115openalex-snapshot
Assembly and ecological function of the root microbiome across angiosperm plant species
inferredcites →https://doi.org/10.1073/pnas.1800918115openalex-snapshot
Large-scale replicated field study of maize rhizosphere identifies heritable microbes
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MOBILIZATION OF LABELLED ORGANIC SULFUR IN RHIZOSPHERE OF RAPE AND BARLEY AND IN NON-RHIZOSPHERE SOIL
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APE: Analyses of Phylogenetics and Evolution in R language
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The Sequence Alignment/Map format and SAMtools
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Search and clustering orders of magnitude faster than BLAST
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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
inferredcites →https://doi.org/10.1093/bioinformatics/bts611openalex-snapshot
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
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Prokka: rapid prokaryotic genome annotation
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STAMP: statistical analysis of taxonomic and functional profiles
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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UpSetR: an R package for the visualization of intersecting sets and their properties
inferredcites →https://doi.org/10.1093/bioinformatics/bty741openalex-snapshot
NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes
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Biosensor reporting of root exudation from Hordeum vulgare in relation to shoot nitrate concentration
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Molecular analysis and control of cysteine biosynthesis: integration of nitrogen and sulphur metabolism
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The role of soil microbes in plant sulphur nutrition
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Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
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The Gene Ontology (GO) database and informatics resource
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CVTree: a phylogenetic tree reconstruction tool based on whole genomes
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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limma powers differential expression analyses for RNA-sequencing and microarray studies
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Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
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Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis
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The Plant Microbiome at Work
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Consequences of human modification of the global nitrogen cycle
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Phylogenetic conservation of soil bacterial responses to simulated global changes
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Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota
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IDENTIFYING PLANT GENES SHAPING MICROBIOTA COMPOSITION IN THE BARLEY RHIZOSPHERE
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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metaSPAdes: a new versatile metagenomic assembler
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The Perennial Ryegrass GenomeZipper: Targeted Use of Genome Resources for Comparative Grass Genomics
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Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns
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Phylogenetic relatedness, phenotypic similarity and plant–soil feedbacks
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Host signature effect on plant root‐associated microbiomes revealed through analyses of resident vs . active communities
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Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?
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Strong correlation of wild barley ( Hordeum spontaneum ) population structure with temperature and precipitation variation
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Islands and streams: clusters and gene flow in wild barley populations from the Levant
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THE EFFECT OF PHOSPHORUS ON THE FORMATION OF HYPHAE IN SOIL BY THEVESICULAR‐ARBUSCULAR MYCORRHIZAL FUNGUS, GLOMUS FASCICULATUM
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03001.xopenalex-snapshot
Through the eye of the needle: a review of isotope approaches to quantify microbial processes mediating soil carbon balance
inferredcites →https://doi.org/10.1111/j.1574-6941.2010.00970.xopenalex-snapshot
Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment
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Phenotypic landscapes: phenological patterns in wild and cultivated barley
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The dynamics of cereal cyst nematode infection differ between susceptible and resistant barley cultivars and lead to changes in (1,3;1,4)‐β‐glucan levels and HvCslF gene transcript abundance
inferredcites →https://doi.org/10.1111/nph.14323openalex-snapshot
Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus
inferredcites →https://doi.org/10.1126/science.aaa8764openalex-snapshot
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
inferredcites →https://doi.org/10.1126/science.aaw9285openalex-snapshot
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
inferredcites →https://doi.org/10.1128/aem.00120-09openalex-snapshot
Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
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Polysaccharide Utilization Loci: Fueling Microbial Communities
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Antagonistic pleiotropy in the bifunctional surface protein FadL (OmpP1) during adaptation of Haemophilus influenzae to chronic lung infection associated with cronic obstructive pulmonary disease
inferredcites →https://doi.org/10.1128/mbio.01833-19openalex-snapshot
Lotus japonicus Symbiosis Genes Impact Microbial Interactions between Symbionts and Multikingdom Commensal Communities
inferredcites →https://doi.org/10.1128/mra.01064-21openalex-snapshot
Genome-Annotated Bacterial Collection of the Barley Rhizosphere Microbiota
inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120106openalex-snapshot
Structure and Functions of the Bacterial Microbiota of Plants
inferredcites →https://doi.org/10.1146/annurev-micro-090817-062524openalex-snapshot
Ecology and Evolution of Plant Microbiomes
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Cytoskeletal Elements in Bacteria
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Plant-Growth-Promoting Rhizobacteria
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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Metagenomics - a guide from sampling to data analysis
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C:N:P stoichiometry and nutrient limitation of the soil microbial biomass in a grazed grassland site under experimental P limitation or excess
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Biogeography of the ecosystems of the healthy human body
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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Performance of neural network basecalling tools for Oxford Nanopore sequencing
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Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota
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Improved metagenomic analysis with Kraken 2
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TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
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The preceding root system drives the composition and function of the rhizosphere microbiome
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Opportunities and challenges in long-read sequencing data analysis
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Normalization and microbial differential abundance strategies depend upon data characteristics
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Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
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The wild side of plant microbiomes
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Maize synthesized benzoxazinoids affect the host associated microbiome
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Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling
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Microbiome definition re-visited: old concepts and new challenges
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The CC-NB-LRR-Type Rdg2a Resistance Gene Confers Immunity to the Seed-Borne Barley Leaf Stripe Pathogen in the Absence of Hypersensitive Cell Death
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Soil Nitrogen Availability and Plant Genotype Modify the Nutrition Strategies of M. truncatula and the Associated Rhizosphere Microbial Communities
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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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Resource Competition between Plankton Algae: An Experimental and Theoretical Approach
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PMCMR: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
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Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria
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Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities
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Contrasting Nitrogen Fertilisation Rates Alter Mycorrhizal Contribution to Barley Nutrition in a Field Trial
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-981-95-0425-1_10openalex-snapshot
Biochar as a Treasure Trove of Essential Nutrients: Combating Elemental Deficiency in Crops
inferred← citeshttps://doi.org/10.1007/s11104-023-05892-0openalex-snapshot
Carrot genotypes differentially alter soil bacterial communities and decomposition of plant residue in soil
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e32283openalex-snapshot
Metabarcoding analysis reveals an interaction among distinct groups of bacteria associated with three different varietals of grapes used for wine production in Brazil
inferred← citeshttps://doi.org/10.1016/j.mib.2019.10.005openalex-snapshot
Microbial associations enabling nitrogen acquisition in plants
inferred← citeshttps://doi.org/10.1038/s41467-022-31022-yopenalex-snapshot
Identifying plant genes shaping microbiota composition in the barley rhizosphere
inferred← citeshttps://doi.org/10.1094/pbiomes-06-19-0028-ropenalex-snapshot
Nitrogen Fertilizers Shape the Composition and Predicted Functions of the Microbiota of Field-Grown Tomato Plants
inferred← citeshttps://doi.org/10.1101/2020.12.07.414870openalex-snapshot
Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota
inferred← citeshttps://doi.org/10.1101/2021.12.20.472907openalex-snapshot
IDENTIFYING PLANT GENES SHAPING MICROBIOTA COMPOSITION IN THE BARLEY RHIZOSPHERE
inferred← citeshttps://doi.org/10.1186/s40168-023-01513-1openalex-snapshot
Plant domestication shapes rhizosphere microbiome assembly and metabolic functions
inferred← citeshttps://doi.org/10.21203/rs.3.pex-1900/v1openalex-snapshot
Barley root exudates collection and primary metabolite profiling
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1881999/v1openalex-snapshot
Carrot genotypes differentially alter soil microbial communities and organic matter priming
inferred← citeshttps://doi.org/10.7287/peerj.12498v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12498v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12498v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12498v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.12498openalex-snapshot
Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota
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