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Mesoscale liquid model of chromatin recapitulates nuclear order of eukaryotes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s00285-016-1031-3openalex-snapshot
A new application of the phase-field method for understanding the mechanisms of nuclear architecture reorganization
inferredcites →https://doi.org/10.1007/s12195-009-0052-zopenalex-snapshot
Matrix Strains Induced by Cells: Computing How Far Cells Can Feel
inferredcites →https://doi.org/10.1016/0001-6160(79)90196-2openalex-snapshot
A microscopic theory for antiphase boundary motion and its application to antiphase domain coarsening
inferredcites →https://doi.org/10.1016/b978-0-12-803480-4.00005-3openalex-snapshot
Mesoscale Modeling of Chromatin Fibers
inferredcites →https://doi.org/10.1016/j.anucene.2014.09.060openalex-snapshot
Physics-based multiscale coupling for full core nuclear reactor simulation
inferredcites →https://doi.org/10.1016/j.bpj.2017.07.014openalex-snapshot
Rupture Dynamics and Chromatin Herniation in Deformed Nuclei
inferredcites →https://doi.org/10.1016/j.bpj.2018.03.011openalex-snapshot
Formation of Chromatin Subcompartments by Phase Separation
inferredcites →https://doi.org/10.1016/j.ceb.2016.02.014openalex-snapshot
How to rule the nucleus: divide et impera
inferredcites →https://doi.org/10.1016/j.cell.2009.01.052openalex-snapshot
Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution
inferredcites →https://doi.org/10.1016/j.cell.2013.01.009openalex-snapshot
LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation
inferredcites →https://doi.org/10.1016/j.cell.2014.05.036openalex-snapshot
3D Trajectories Adopted by Coding and Regulatory DNA Elements: First-Passage Times for Genomic Interactions
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2016.04.047openalex-snapshot
Coexisting Liquid Phases Underlie Nucleolar Subcompartments
inferredcites →https://doi.org/10.1016/j.cell.2017.04.022openalex-snapshot
Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression
inferredcites →https://doi.org/10.1016/j.cell.2017.09.043openalex-snapshot
Multiscale 3D Genome Rewiring during Mouse Neural Development
inferredcites →https://doi.org/10.1016/j.celrep.2019.08.045openalex-snapshot
Polymer Modeling Predicts Chromosome Reorganization in Senescence
inferredcites →https://doi.org/10.1016/j.chemphyslip.2014.08.001openalex-snapshot
Phase-field theories for mathematical modeling of biological membranes
inferredcites →https://doi.org/10.1016/j.cis.2016.05.012openalex-snapshot
Protein intrinsic disorder-based liquid–liquid phase transitions in biological systems: Complex coacervates and membrane-less organelles
inferredcites →https://doi.org/10.1016/j.gde.2015.11.006openalex-snapshot
Liquid-like behavior of chromatin
inferredcites →https://doi.org/10.1016/j.jcp.2010.05.014openalex-snapshot
Modeling and computation of two phase geometric biomembranes using surface finite elements
inferredcites →https://doi.org/10.1016/j.tcb.2011.08.001openalex-snapshot
Compartmentalization of the nucleus
inferredcites →https://doi.org/10.1016/j.tcb.2018.02.004openalex-snapshot
Protein Phase Separation: A New Phase in Cell Biology
inferredcites →https://doi.org/10.1021/acs.biochem.8b00401openalex-snapshot
The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation
inferredcites →https://doi.org/10.1021/acs.jpclett.9b00099openalex-snapshot
Complete Phase Diagram for Liquid–Liquid Phase Separation of Intrinsically Disordered Proteins
inferredcites →https://doi.org/10.1038/nature10879openalex-snapshot
Phase transitions in the assembly of multivalent signalling proteins
inferredcites →https://doi.org/10.1038/nature14222openalex-snapshot
Chromatin architecture reorganization during stem cell differentiation
inferredcites →https://doi.org/10.1038/nature22822openalex-snapshot
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
inferredcites →https://doi.org/10.1038/nature22989openalex-snapshot
Phase separation drives heterochromatin domain formation
inferredcites →https://doi.org/10.1038/ncomms9044openalex-snapshot
Loss of lamin A function increases chromatin dynamics in the nuclear interior
inferredcites →https://doi.org/10.1038/nmeth.3256openalex-snapshot
A general method to improve fluorophores for live-cell and single-molecule microscopy
inferredcites →https://doi.org/10.1038/nphys3532openalex-snapshot
Polymer physics of intracellular phase transitions
inferredcites →https://doi.org/10.1038/s41467-019-09185-yopenalex-snapshot
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila
inferredcites →https://doi.org/10.1073/pnas.1017150108openalex-snapshot
Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes
inferredcites →https://doi.org/10.1073/pnas.1204799109openalex-snapshot
Complexity of chromatin folding is captured by the strings and binders switch model
inferredcites →https://doi.org/10.1073/pnas.1220313110openalex-snapshot
Micron-scale coherence in interphase chromatin dynamics
inferredcites →https://doi.org/10.1073/pnas.1518552112openalex-snapshot
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
inferredcites →https://doi.org/10.1073/pnas.1613607113openalex-snapshot
Transferable model for chromosome architecture
inferredcites →https://doi.org/10.1073/pnas.1702226114openalex-snapshot
On the origin of shape fluctuations of the cell nucleus
inferredcites →https://doi.org/10.1073/pnas.1714980114openalex-snapshot
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
inferredcites →https://doi.org/10.1073/pnas.1717730115openalex-snapshot
Chromatin organization by an interplay of loop extrusion and compartmental segregation
inferredcites →https://doi.org/10.1073/pnas.1806297115openalex-snapshot
Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes
inferredcites →https://doi.org/10.1073/pnas.1807073115openalex-snapshot
Extensile motor activity drives coherent motions in a model of interphase chromatin
inferredcites →https://doi.org/10.1073/pnas.1812268115openalex-snapshot
Bottom–up modeling of chromatin segregation due to epigenetic modifications
inferredcites →https://doi.org/10.1073/pnas.1816424116openalex-snapshot
Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub
inferredcites →https://doi.org/10.1073/pnas.1816936115openalex-snapshot
Linker histones as liquid-like glue for chromatin
inferredcites →https://doi.org/10.1073/pnas.1900875116openalex-snapshot
Inner workings of gene folding
inferredcites →https://doi.org/10.1088/1478-3975/aaee45openalex-snapshot
Numerical study on spindle positioning using phase field method
inferredcites →https://doi.org/10.1091/mbc.e17-06-0359openalex-snapshot
Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy
inferredcites →https://doi.org/10.1093/nar/gku462openalex-snapshot
Spatial confinement is a major determinant of the folding landscape of human chromosomes
inferredcites →https://doi.org/10.1093/nar/gku698openalex-snapshot
Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains
inferredcites →https://doi.org/10.1093/nar/gkz374openalex-snapshot
Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes
inferredcites →https://doi.org/10.1101/244038openalex-snapshot
Heterochromatin drives organization of conventional and inverted nuclei
inferredcites →https://doi.org/10.1101/395822openalex-snapshot
Chromatin architecture reorganisation during neuronal cell differentiation in Drosophila genome
inferredcites →https://doi.org/10.1103/physrevlett.120.088101openalex-snapshot
Fractal Folding and Medium Viscoelasticity Contribute Jointly to Chromosome Dynamics
inferredcites →https://doi.org/10.1103/physrevlett.121.148101openalex-snapshot
Surface Fluctuations and Coalescence of Nucleolar Droplets in the Human Cell Nucleus
inferredcites →https://doi.org/10.1103/physrevlett.121.158102openalex-snapshot
Positioning of Particles in Active Droplets
inferredcites →https://doi.org/10.1103/physrevlett.121.238101openalex-snapshot
Active Tuning of Synaptic Patterns Enhances Immune Discrimination
inferredcites →https://doi.org/10.1126/science.1172046openalex-snapshot
Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.aaf4382openalex-snapshot
Liquid phase condensation in cell physiology and disease
inferredcites →https://doi.org/10.1126/science.aag0025openalex-snapshot
ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells
inferredcites →https://doi.org/10.1140/epje/i2017-11566-8openalex-snapshot
Elastic and dynamic properties of membrane phase-field models
inferredcites →https://doi.org/10.1186/1742-4682-4-15openalex-snapshot
Can visco-elastic phase separation, macromolecular crowding and colloidal physics explain nuclear organisation?
inferredcites →https://doi.org/10.1186/s13072-018-0173-5openalex-snapshot
Chromosome–nuclear envelope attachments affect interphase chromosome territories and entanglement
inferredcites →https://doi.org/10.1371/journal.pcbi.1005991openalex-snapshot
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
inferredcites →https://doi.org/10.1371/journal.pcbi.1006000openalex-snapshot
A stochastic and dynamical view of pluripotency in mouse embryonic stem cells
inferredcites →https://doi.org/10.1371/journal.pcbi.1006592openalex-snapshot
A multiscale model of epigenetic heterogeneity-driven cell fate decision-making
inferredcites →https://doi.org/10.1371/journal.pcbi.1006617openalex-snapshot
Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci
inferredcites →https://doi.org/10.1371/journal.pone.0033501openalex-snapshot
Study on Multicellular Systems Using a Phase Field Model
inferredcites →https://doi.org/10.3390/cells7020011openalex-snapshot
Consequences of Lamin B1 and Lamin B Receptor Downregulation in Senescence
inferredcites →https://doi.org/10.5334/jors.bxopenalex-snapshot
Continuous Integration for Concurrent MOOSE Framework and Application Development on GitHub
inferredcites →https://doi.org/10.7554/elife.04123openalex-snapshot
Phase transitions of multivalent proteins can promote clustering of membrane receptors
inferredcites →https://doi.org/10.7554/elife.43938openalex-snapshot
The modular mechanism of chromocenter formation in Drosophila
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1088/1478-3975/abc5adopenalex-snapshot
Liquid–liquid phase separation driven compartmentalization of reactive nucleoplasm
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