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Heterochromatin drives organization of conventional and inverted nuclei

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ar.a.20336openalex-snapshot
Molecular anatomy of a speckle
inferredcites →https://doi.org/10.1007/s00285-016-1031-3openalex-snapshot
A new application of the phase-field method for understanding the mechanisms of nuclear architecture reorganization
inferredcites →https://doi.org/10.1007/s10577-013-9375-7openalex-snapshot
Epigenetics of eu- and heterochromatin in inverted and conventional nuclei from mouse retina
inferredcites →https://doi.org/10.1016/b978-0-12-800046-5.00010-2openalex-snapshot
How Chromatin Looping and Nuclear Envelope Attachment Affect Genome Organization in Eukaryotic Cell Nuclei
inferredcites →https://doi.org/10.1016/j.ceb.2015.04.003openalex-snapshot
Nuclear bodies: the emerging biophysics of nucleoplasmic phases
inferredcites →https://doi.org/10.1016/j.ceb.2016.02.014openalex-snapshot
How to rule the nucleus: divide et impera
inferredcites →https://doi.org/10.1016/j.cell.2009.01.052openalex-snapshot
Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution
inferredcites →https://doi.org/10.1016/j.cell.2013.01.009openalex-snapshot
LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
inferredcites →https://doi.org/10.1016/j.cell.2017.04.022openalex-snapshot
Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression
inferredcites →https://doi.org/10.1016/j.cell.2017.05.004openalex-snapshot
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
inferredcites →https://doi.org/10.1016/j.cell.2017.09.026openalex-snapshot
Cohesin Loss Eliminates All Loop Domains
inferredcites →https://doi.org/10.1016/j.celrep.2016.04.085openalex-snapshot
Formation of Chromosomal Domains by Loop Extrusion
inferredcites →https://doi.org/10.1016/j.febslet.2015.09.004openalex-snapshot
Modeling chromosomes: Beyond pretty pictures
inferredcites →https://doi.org/10.1016/j.molcel.2013.02.011openalex-snapshot
The Hierarchy of the 3D Genome
inferredcites →https://doi.org/10.1016/j.molcel.2018.05.017openalex-snapshot
Lamins Organize the Global Three-Dimensional Genome from the Nuclear Periphery
inferredcites →https://doi.org/10.1038/nature21429openalex-snapshot
3D structures of individual mammalian genomes studied by single-cell Hi-C
inferredcites →https://doi.org/10.1038/nature21711openalex-snapshot
Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
inferredcites →https://doi.org/10.1038/nature22822openalex-snapshot
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
inferredcites →https://doi.org/10.1038/nature22989openalex-snapshot
Phase separation drives heterochromatin domain formation
inferredcites →https://doi.org/10.1038/nature24281openalex-snapshot
Two independent modes of chromatin organization revealed by cohesin removal
inferredcites →https://doi.org/10.1038/nmeth.2148openalex-snapshot
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
inferredcites →https://doi.org/10.1038/nmeth.4329openalex-snapshot
FISH-ing for captured contacts: towards reconciling FISH and 3C
inferredcites →https://doi.org/10.1038/nrg.2016.112openalex-snapshot
Organization and function of the 3D genome
inferredcites →https://doi.org/10.1073/pnas.1504783112openalex-snapshot
Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain
inferredcites →https://doi.org/10.1073/pnas.1518552112openalex-snapshot
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
inferredcites →https://doi.org/10.1073/pnas.1613607113openalex-snapshot
Transferable model for chromosome architecture
inferredcites →https://doi.org/10.1073/pnas.1717730115openalex-snapshot
Chromatin organization by an interplay of loop extrusion and compartmental segregation
inferredcites →https://doi.org/10.1093/nar/gkt1417openalex-snapshot
Chromosome positioning from activity-based segregation
inferredcites →https://doi.org/10.1093/nar/gku698openalex-snapshot
Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains
inferredcites →https://doi.org/10.1101/121889openalex-snapshot
HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps
inferredcites →https://doi.org/10.1101/196261openalex-snapshot
Chromatin organization by an interplay of loop extrusion and compartmental segregation
inferredcites →https://doi.org/10.1101/234112openalex-snapshot
Transcription organizes euchromatin similar to an active microemulsion
inferredcites →https://doi.org/10.1101/gr.213751.116openalex-snapshot
Small chromosomal regions position themselves autonomously according to their chromatin class
inferredcites →https://doi.org/10.1103/physreve.92.032118openalex-snapshot
Nonequilibrium statistical mechanics of mixtures of particles in contact with different thermostats
inferredcites →https://doi.org/10.1103/physrevlett.118.098002openalex-snapshot
Small Activity Differences Drive Phase Separation in Active-Passive Polymer Mixtures
inferredcites →https://doi.org/10.1371/journal.pgen.1000889openalex-snapshot
Initial Genomics of the Human Nucleolus
inferredcites →https://doi.org/10.15252/embj.201798004openalex-snapshot
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
inferredcites →https://doi.org/10.3389/fgene.2016.00082openalex-snapshot
Anchoring a Leviathan: How the Nuclear Membrane Tethers the Genome
inferredcites →https://doi.org/10.3390/genes2030502openalex-snapshot
Chromatin Organization by Repetitive Elements (CORE): A Genomic Principle for the Higher-Order Structure of Chromosomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00412-018-0685-6openalex-snapshot
Patterns of microchromosome organization remain highly conserved throughout avian evolution
inferred← citeshttps://doi.org/10.1007/s10577-018-9597-9openalex-snapshot
Heterochromatic regions in Japanese quail chromosomes: comprehensive molecular-cytogenetic characterization and 3D mapping in interphase nucleus
inferred← citeshttps://doi.org/10.1016/j.ceb.2019.02.006openalex-snapshot
Chromatin’s physical properties shape the nucleus and its functions
inferred← citeshttps://doi.org/10.1016/j.ceb.2019.05.001openalex-snapshot
Two major mechanisms of chromosome organization
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.107929openalex-snapshot
Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers
inferred← citeshttps://doi.org/10.1016/j.devcel.2019.10.002openalex-snapshot
Probing the Functional Role of Physical Motion in Development
inferred← citeshttps://doi.org/10.1016/j.gde.2019.04.009openalex-snapshot
Developing landscapes: genome architecture during early embryogenesis
inferred← citeshttps://doi.org/10.1016/j.gene.2023.147960openalex-snapshot
Perspective: “Current understanding of NADs dynamics and mechanisms of Disease”
inferred← citeshttps://doi.org/10.1016/j.jmb.2019.09.026openalex-snapshot
TADs as the Caller Calls Them
inferred← citeshttps://doi.org/10.1016/j.molcel.2019.03.017openalex-snapshot
Structure and Function in Drosophila Chromosomes: Visualizing Topological Domains
inferred← citeshttps://doi.org/10.1016/j.pbi.2019.03.008openalex-snapshot
3D genome organization: a role for phase separation and loop extrusion?
inferred← citeshttps://doi.org/10.1038/s41556-019-0406-2openalex-snapshot
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase
inferred← citeshttps://doi.org/10.1038/s41588-021-00784-4openalex-snapshot
Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics
inferred← citeshttps://doi.org/10.1038/s41594-019-0187-0openalex-snapshot
Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase
inferred← citeshttps://doi.org/10.1038/s41594-019-0205-2openalex-snapshot
Three-dimensional genome structures of single sensory neurons in mouse visual and olfactory systems
inferred← citeshttps://doi.org/10.1038/s41594-020-0506-5openalex-snapshot
Multi-contact 3C reveals that the human genome during interphase is largely not entangled
inferred← citeshttps://doi.org/10.1039/d0cp01877eopenalex-snapshot
Polymer models for the mechanisms of chromatin 3D folding: review and perspective
inferred← citeshttps://doi.org/10.1073/pnas.1717730115openalex-snapshot
Chromatin organization by an interplay of loop extrusion and compartmental segregation
inferred← citeshttps://doi.org/10.1073/pnas.1812268115openalex-snapshot
Bottom–up modeling of chromatin segregation due to epigenetic modifications
inferred← citeshttps://doi.org/10.1093/nar/gkaa1275openalex-snapshot
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1101/2020.03.03.975425openalex-snapshot
Multi-contact 3C data reveal that the human genome is largely unentangled
inferred← citeshttps://doi.org/10.1101/234112openalex-snapshot
Transcription organizes euchromatin similar to an active microemulsion
inferred← citeshttps://doi.org/10.1101/296566openalex-snapshot
Active gelation breaks time-reversal-symmetry of mitotic chromosome mechanics
inferred← citeshttps://doi.org/10.1101/339085openalex-snapshot
Migration through a small pore disrupts inactive chromatin organization in neutrophil-like cells
inferred← citeshttps://doi.org/10.1101/405969openalex-snapshot
Hi-D: Nanoscale mapping of nuclear dynamics in single living cells
inferred← citeshttps://doi.org/10.1101/437459openalex-snapshot
Condensin II inactivation in interphase does not affect chromatin folding or gene expression
inferred← citeshttps://doi.org/10.1101/481598openalex-snapshot
The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains
inferred← citeshttps://doi.org/10.1101/601849openalex-snapshot
Chromatin-lamin B1 interaction promotes genomic compartmentalization and constrains chromatin dynamics
inferred← citeshttps://doi.org/10.1101/634980openalex-snapshot
Mesoscale liquid model of chromatin recapitulates nuclear order of eukaryotes
inferred← citeshttps://doi.org/10.1111/nph.17842openalex-snapshot
Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
inferred← citeshttps://doi.org/10.1146/annurev-biophys-052118-115638openalex-snapshot
How the Genome Folds: The Biophysics of Four-Dimensional Chromatin Organization
inferred← citeshttps://doi.org/10.1186/s12915-018-0608-2openalex-snapshot
Migration through a small pore disrupts inactive chromatin organization in neutrophil-like cells
inferred← citeshttps://doi.org/10.1186/s13072-019-0269-6openalex-snapshot
Polymer coil–globule phase transition is a universal folding principle of Drosophila epigenetic domains
inferred← citeshttps://doi.org/10.1186/s13072-022-00450-xopenalex-snapshot
Open chromatin analysis in Trypanosoma cruzi life forms highlights critical differences in genomic compartments and developmental regulation at tDNA loci
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007289openalex-snapshot
Role of dynamic nuclear deformation on genomic architecture reorganization
inferred← citeshttps://doi.org/10.3389/fnins.2018.00874openalex-snapshot
Regulation of Chromatin Structure During Neural Development
inferred← citeshttps://doi.org/10.3390/cells8020136openalex-snapshot
The Nuclear Lamina as an Organizer of Chromosome Architecture
inferred← citeshttps://doi.org/10.3410/f.735359149.793562715openalex-snapshot
Faculty Opinions recommendation of Chromatin's physical properties shape the nucleus and its functions.
inferred← citeshttps://doi.org/10.70675/37a54d4bzd7f4z45d9zadf8z7f69bffedebaopenalex-snapshot
Organisation du génome par le complexe cohésine chez la levure Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.70675/52427c94z7a06z422ez8406z14abbde1d267openalex-snapshot
Inférence bayésienne des paramètres structuraux de la chromatine de la drosophile sur des images super-résolues de domaines épigénétiques
inferred← citeshttps://doi.org/10.70675/5e118199z3fc7z4e3azaa5cz45534f8daaf9openalex-snapshot
Maintien de l'hétérochromatine en réponse aux dommages à l'ADN dans des cellules de mammifères
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