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Diversification in evolutionary arenas – assessment and synthesis

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Impact of whole‐genome duplication events on diversification rates in angiosperms
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Ecological opportunity and the adaptive diversification of lineages
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Modeling the two‐locus architecture of divergent pollinator adaptation: how variation in SAD paralogs affects fitness and evolutionary divergence in sexually deceptive orchids
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A theory of pulse dynamics and disturbance in ecology
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Tempo and Mode in Evolution
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Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology
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Evolutionary trees from DNA sequences: A maximum likelihood approach
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An introduction to niche construction theory
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Plant–plant interactions promote alpine diversification
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Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales
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The Kew Review: Conifers of the World
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The dimensionality of niche space
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Novelty and Innovation in the History of Life
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Amino Acid Change in an Orchid Desaturase Enables Mimicry of the Pollinator’s Sex Pheromone
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Radiation and adaptation, evolutionary biology and semantics
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Ecological explanations for (incomplete) speciation
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Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation
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Biodiversity and Topographic Complexity: Modern and Geohistorical Perspectives
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Grand Views of Evolution
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Upward Adaptive Radiation Cascades: Predator Diversification Induced by Prey Diversification
inferredcites →https://doi.org/10.1016/j.tree.2018.04.001openalex-snapshot
Evolutionary Rates Standardized for Evolutionary Space: Perspectives on Trait Evolution
inferredcites →https://doi.org/10.1016/j.tree.2019.01.012openalex-snapshot
The Ecology of Nonecological Speciation and Nonadaptive Radiations
inferredcites →https://doi.org/10.1016/j.tree.2019.02.008openalex-snapshot
A Combinatorial View on Speciation and Adaptive Radiation
inferredcites →https://doi.org/10.1016/j.tree.2019.03.001openalex-snapshot
A User’s Guide to Metaphors In Ecology and Evolution
inferredcites →https://doi.org/10.1016/j.ympev.2015.06.006openalex-snapshot
Life history lability underlies rapid climate niche evolution in the angiosperm clade Montiaceae
inferredcites →https://doi.org/10.1016/j.ympev.2017.10.003openalex-snapshot
Adaptive radiations should not be simplified: The case of the danthonioid grasses
inferredcites →https://doi.org/10.1016/s0169-5347(97)01273-1openalex-snapshot
Key innovations and the ecology of macroevolution
inferredcites →https://doi.org/10.1016/s0959-437x(02)00353-2openalex-snapshot
Evolution of synonymous codon usage in metazoans
inferredcites →https://doi.org/10.1016/s1095-6433(02)00045-4openalex-snapshot
Climate variations and the physiological basis of temperature dependent biogeography: systemic to molecular hierarchy of thermal tolerance in animals
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Exaptation—a Missing Term in the Science of Form
inferredcites →https://doi.org/10.1017/s0094837300005224openalex-snapshot
Punctuated equilibria: the tempo and mode of evolution reconsidered
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Orchid pollination by sexual swindle
inferredcites →https://doi.org/10.1038/217624a0openalex-snapshot
Evolutionary Rate at the Molecular Level
inferredcites →https://doi.org/10.1038/27900openalex-snapshot
Adaptive radiation in a heterogeneous environment
inferredcites →https://doi.org/10.1038/44766openalex-snapshot
Inferring the historical patterns of biological evolution
inferredcites →https://doi.org/10.1038/nature03339openalex-snapshot
Cycles in fossil diversity
inferredcites →https://doi.org/10.1038/nature07893openalex-snapshot
Adaptation and diversification on islands
inferredcites →https://doi.org/10.1038/nature11144openalex-snapshot
Ecological opportunity and sexual selection together predict adaptive radiation
inferredcites →https://doi.org/10.1038/nature12872openalex-snapshot
Three keys to the radiation of angiosperms into freezing environments
inferredcites →https://doi.org/10.1038/nature13726openalex-snapshot
The genomic substrate for adaptive radiation in African cichlid fish
inferredcites →https://doi.org/10.1038/nature17443openalex-snapshot
Late Quaternary climate change shapes island biodiversity
inferredcites →https://doi.org/10.1038/nature19324openalex-snapshot
Addition of multiple limiting resources reduces grassland diversity
inferredcites →https://doi.org/10.1038/nature21074openalex-snapshot
Mega-evolutionary dynamics of the adaptive radiation of birds
inferredcites →https://doi.org/10.1038/nature21675openalex-snapshot
The true tempo of evolutionary radiation and decline revealed on the Hawaiian archipelago
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Widespread adaptive evolution during repeated evolutionary radiations in New World lupins
inferredcites →https://doi.org/10.1038/ncomms14363openalex-snapshot
Ancient hybridization fuels rapid cichlid fish adaptive radiations
inferredcites →https://doi.org/10.1038/ncomms15810openalex-snapshot
Diversity spurs diversification in ecological communities
inferredcites →https://doi.org/10.1038/nrg1523openalex-snapshot
The genetic theory of adaptation: a brief history
inferredcites →https://doi.org/10.1038/s41467-018-05419-7openalex-snapshot
Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates
inferredcites →https://doi.org/10.1038/s41467-018-05479-9openalex-snapshot
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
inferredcites →https://doi.org/10.1038/s41467-018-06732-xopenalex-snapshot
The dimensionality of niche space allows bounded and unbounded processes to jointly influence diversification
inferredcites →https://doi.org/10.1038/s41576-018-0043-9openalex-snapshot
Understanding explosive diversification through cichlid fish genomics
inferredcites →https://doi.org/10.1073/pnas.0601928103openalex-snapshot
Island radiation on a continental scale: Exceptional rates of plant diversification after uplift of the Andes
inferredcites →https://doi.org/10.1073/pnas.0811087106openalex-snapshot
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
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Bringing the Hutchinsonian niche into the 21st century: Ecological and evolutionary perspectives
inferredcites →https://doi.org/10.1073/pnas.091092698openalex-snapshot
Lessons from the past: Biotic recoveries from mass extinctions
inferredcites →https://doi.org/10.1073/pnas.1007606107openalex-snapshot
Equilibrium speciation dynamics in a model adaptive radiation of island lizards
inferredcites →https://doi.org/10.1073/pnas.1013313108openalex-snapshot
Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids
inferredcites →https://doi.org/10.1073/pnas.1100628108openalex-snapshot
Contemporaneous and recent radiations of the world's major succulent plant lineages
inferredcites →https://doi.org/10.1073/pnas.1113242108openalex-snapshot
Inferring speciation and extinction processes from extant species data
inferredcites →https://doi.org/10.1073/pnas.1115835109openalex-snapshot
Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas
inferredcites →https://doi.org/10.1073/pnas.1213621109openalex-snapshot
Hemisphere-scale differences in conifer evolutionary dynamics
inferredcites →https://doi.org/10.1073/pnas.1308721110openalex-snapshot
Evolutionary lag times and recent origin of the biota of an ancient desert (Atacama–Sechura)
inferredcites →https://doi.org/10.1073/pnas.1403157111openalex-snapshot
Long-term morphological stasis maintained by a plant–pollinator mutualism
inferredcites →https://doi.org/10.1073/pnas.1502803112openalex-snapshot
The role of clade competition in the diversification of North American canids
inferredcites →https://doi.org/10.1073/pnas.1902693116openalex-snapshot
Climate cooling and clade competition likely drove the decline of lamniform sharks
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Age and rate of diversification of the Hawaiian silversword alliance (Compositae)
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POLLINATORS AS PREPOLLINATING ISOLATION FACTORS: EVOLUTION AND SPECIATION IN OPHRYS (ORCFFLDACEAE)
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Speciation and adaptive radiation in African lakes
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A preliminary classification of evolutionary radiations
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Key evolutionary innovations and their ecological mechanisms
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Stochastic Mapping of Morphological Characters
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Estimating a Binary Character's Effect on Speciation and Extinction
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The Law of Adaptive Radiation
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Phylogenies and the Comparative Method
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Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data
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Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
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The Ecological Dynamics of Clade Diversification and Community Assembly
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A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model
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Species Diversity Is Dynamic and Unbounded at Local and Continental Scales
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Revisiting a Key Innovation in Evolutionary Biology: Felsenstein’s “Phylogenies and the Comparative Method”
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MRBAYES: Bayesian inference of phylogenetic trees
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How old are island endemics?
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The Ecology of Adaptive Radiation
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A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy
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Gene Trees in Species Trees
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Quantitative Traits and Diversification
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Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification
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Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling
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Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms
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A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models
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Probabilistic Graphical Model Representation in Phylogenetics
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The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters
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Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation
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Species-Level Phylogeny and Polyploid Relationships inHordeum(Poaceae) Inferred by Next-Generation Sequencing andIn SilicoCloning of Multiple Nuclear Loci
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Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction
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A General Model for Estimating Macroevolutionary Landscapes
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Rethinking phylogenetic comparative methods
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R$^{2}$s for Correlated Data: Phylogenetic Models, LMMs, and GLMMs
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Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters
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African cichlid fish: a model system in adaptive radiation research
inferredcites →https://doi.org/10.1098/rspb.2008.1204openalex-snapshot
Origin, adaptive radiation and diversification of the Hawaiian lobeliads (Asterales: Campanulaceae)
inferredcites →https://doi.org/10.1098/rspb.2013.1253openalex-snapshot
Competition both drives and impedes diversification in a model adaptive radiation
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The effects of island ontogeny on species diversity and phylogeny
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To adapt or go extinct? The fate of megafaunal palm fruits under past global change
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Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers
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The phylogenetic regression
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The reconstructed evolutionary process
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Plant speciation in continental island floras as exemplified by Nigella in the Aegean Archipelago
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The uncertain role of diversity dependence in species diversification and the need to incorporate time-varying carrying capacities
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The topology of evolutionary novelty and innovation in macroevolution
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Diversification in evolutionary arenas – assessment and synthesis
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Tip rates, phylogenies and diversification: What are we estimating, and how good are the estimates?
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Oceanic island biogeography through the lens of the general dynamic model: assessment and prospect
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Global grass ( P oaceae) success underpinned by traits facilitating colonization, persistence and habitat transformation
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The genetics of evolutionary radiations
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Phylogenetic approaches for studying diversification
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Cichlid species‐area relationships are shaped by adaptive radiations that scale with area
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Predicting rates of interspecific interaction from phylogenetic trees
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Equilibrium and non‐equilibrium dynamics simultaneously operate in the Galápagos islands
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Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification
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ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS
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Interactions within and between clades shaped the diversification of terrestrial carnivores
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Hidden state models improve state-dependent diversification approaches, including biogeographical models
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The general dynamic model: towards a unified theory of island biogeography?
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Are the radiations of temperate lineages in tropical alpine ecosystems pre‐adapted?
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The carrying capacity for species richness
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ABSOLUTE DIVERSIFICATION RATES IN ANGIOSPERM CLADES
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STATISTICAL ANALYSIS OF DIVERSIFICATION WITH SPECIES TRAITS
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TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD
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LIKELIHOOD METHODS FOR DETECTING TEMPORAL SHIFTS IN DIVERSIFICATION RATES
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What about non-adaptive radiation?
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The origin of the savanna biome
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ORIGINAL ARTICLE: A general dynamic theory of oceanic island biogeography
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Spatial species‐richness gradients across scales: a meta‐analysis
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A physiological analogy of the niche for projecting the potential distribution of plants
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Accelerated rates of climatic‐niche evolution underlie rapid species diversification
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Is regional species diversity bounded or unbounded?
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The global distribution of ecosystems in a world without fire
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GEOGRAPHIC SPECIATION IN TROPICAL ECHINOIDS
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ADAPTIVE ZONES AND THE ORDERS OF MAMMALS
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NATURAL SELECTION AND RANDOM GENETIC DRIFT IN PHENOTYPIC EVOLUTION
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STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION
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IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
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EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES
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EARLY BURSTS OF BODY SIZE AND SHAPE EVOLUTION ARE RARE IN COMPARATIVE DATA
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FLORAL ISOLATION IS THE MAIN REPRODUCTIVE BARRIER AMONG CLOSELY RELATED SEXUALLY DECEPTIVE ORCHIDS
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LOCATING EVOLUTIONARY PRECURSORS ON A PHYLOGENETIC TREE
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phytools: an R package for phylogenetic comparative biology (and other things)
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Diversitree: comparative phylogenetic analyses of diversification in R
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Stitch the niche – a practical philosophy and visual schematic for the niche concept
inferredcites →https://doi.org/10.1111/jbi.12033openalex-snapshot
Ditch the niche – is the niche a useful concept in ecology or species distribution modelling?
inferredcites →https://doi.org/10.1111/jbi.13607openalex-snapshot
The flickering connectivity system of the north Andean páramos
inferredcites →https://doi.org/10.1111/jeb.13477openalex-snapshot
Detecting the macroevolutionary signal of species interactions
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Genic rather than genome‐wide differences between sexually deceptive O phrysorchids with different pollinators
inferredcites →https://doi.org/10.1111/nph.13219openalex-snapshot
Multiple shifts to different pollinators fuelled rapid diversification in sexually deceptive Ophrys orchids
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The ubiquity of alpine plant radiations: from the Andes to the Hengduan Mountains
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On the complexity of triggering evolutionary radiations
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Topography as a driver of diversification in the C ape F loristic R egion of S outh A frica
inferredcites →https://doi.org/10.1111/nph.13362openalex-snapshot
When do plant radiations influence community assembly? The importance of historical contingency in the race for niche space
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Confluence, synnovation, and depauperons in plant diversification
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Process and pattern in cichlid radiations – inferences for understanding unusually high rates of evolutionary diversification
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Adaptive radiation versus ‘radiation’ and ‘explosive diversification’: why conceptual distinctions are fundamental to understanding evolution
inferredcites →https://doi.org/10.1111/nph.13491openalex-snapshot
Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications
inferredcites →https://doi.org/10.1111/nph.15797openalex-snapshot
Island woodiness underpins accelerated disparification in plant radiations
inferredcites →https://doi.org/10.1126/science.1065889openalex-snapshot
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
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The Red Queen and the Court Jester: Species Diversity and the Role of Biotic and Abiotic Factors Through Time
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Interplay Between Changing Climate and Species’ Ecology Drives Macroevolutionary Dynamics
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The Amborella Genome and the Evolution of Flowering Plants
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Glacial Migrations of Plants: Island Biogeographical Evidence
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Shifts in Diversification Rate with the Origin of Angiosperms
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Accommodating Phylogenetic Uncertainty in Evolutionary Studies
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Diversification and Extinction in the History of Life
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Modeling the ecology and evolution of biodiversity: Biogeographical cradles, museums, and graves
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Evolutionary Inferences from Phylogenies: A Review of Methods
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Diversity-Dependence, Ecological Speciation, and the Role of Competition in Macroevolution
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Biome Shifts and Niche Evolution in Plants
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Ecological Opportunity and Adaptive Radiation
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Phylogenetic Insights on Adaptive Radiation
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Phylogenetic Systematics
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INTEGRATIVE APPROACHES TO EVOLUTIONARY ECOLOGY: Anolis Lizards as Model Systems
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Elastic, not plastic species: Frozen plasticity theory and the origin of adaptive evolution in sexually reproducing organisms
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Relaxed Phylogenetics and Dating with Confidence
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Discordance of Species Trees with Their Most Likely Gene Trees
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The Genetic Basis of Pollinator Adaptation in a Sexually Deceptive Orchid
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Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
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Origination and extinction components of taxonomic diversity: Paleozoic and post-Paleozoic dynamics
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rr2: An R package to calculate $R^2$s for regression models
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The Anolis Lizards of Bimini: Resource Partitioning in a Complex Fauna
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THE MAJOR FEATURES OF EVOLUTION
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Evolutionary Strategies and Morphological Innovations: Cichlid Pharyngeal Jaws
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Phylogenetic insights into Andean plant diversification
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Páramo is the world's fastest evolving and coolest biodiversity hotspot
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Past, future, and present of state‐dependent models of diversification
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The comparative method in evolutionary biology
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The Major Features of Evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Diversification in evolutionary arenas—Assessment and synthesis
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inferred← citeshttps://doi.org/10.1111/nph.16294openalex-snapshot
Darwin’s second ‘abominable mystery’: trait flexibility as the innovation leading to angiosperm diversity
inferred← citeshttps://doi.org/10.1111/nph.70330openalex-snapshot
Diversification patterns of the southwest Australian biodiversity hotspot reveal a novel macroevolutionary pathway to plant hyperdiversity
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Phylogenetic diversity patterns reveal contrasting and spatially dependent evolutionary histories in a hyper-diverse montane vegetation complex
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The ‘Holy Grail’ in Phylogenetic Reconstruction: Seeing the Forest for the Trees?
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Opportunity Begets Opportunity to Drive Macroevolutionary Dynamics of a Diverse Lizard Radiation
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