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Transposable element dynamics are consistent across the Drosophila phylogeny, despite drastically differing content
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi0410s25openalex-snapshot
Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
inferredcites →https://doi.org/10.1007/978-1-59745-583-1_4openalex-snapshot
The Use of P-Element Transposons to Generate Transgenic Flies
inferredcites →https://doi.org/10.1007/bf02099908openalex-snapshot
The distribution of P-element sequences inDrosophila: Thewillistoni andsaltans species groups
inferredcites →https://doi.org/10.1016/0092-8674(93)90318-kopenalex-snapshot
Transposons in place of telomeric repeats at a Drosophila telomere
inferredcites →https://doi.org/10.1016/j.cell.2007.01.043openalex-snapshot
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
inferredcites →https://doi.org/10.1016/j.cell.2011.11.042openalex-snapshot
Adaptation to P Element Transposon Invasion in Drosophila melanogaster
inferredcites →https://doi.org/10.1016/j.cell.2011.12.001openalex-snapshot
Learning to Protect Your Genome on the Fly
inferredcites →https://doi.org/10.1016/j.jviromet.2008.06.007openalex-snapshot
Universal virus detection by degenerate-oligonucleotide primed polymerase chain reaction of purified viral nucleic acids
inferredcites →https://doi.org/10.1016/j.meegid.2017.11.013openalex-snapshot
The dynamic evolution of Drosophila innubila Nudivirus
inferredcites →https://doi.org/10.1016/j.pbi.2011.01.003openalex-snapshot
Transposable element origins of epigenetic gene regulation
inferredcites →https://doi.org/10.1016/j.tig.2010.08.007openalex-snapshot
The piRNA pathway: a fly's perspective on the guardian of the genome
inferredcites →https://doi.org/10.1016/j.tig.2010.10.003openalex-snapshot
Evolutionary dynamics of transposable elements in a small RNA world
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0079-6603(08)60158-0openalex-snapshot
Transposable Elements in Natural Populations of Drosophila
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672300027695openalex-snapshot
On the role of unequal exchange in the containment of transposable element copy number
inferredcites →https://doi.org/10.1023/a:1018300721953openalex-snapshot
Do the integrases of LTR-retrotransposons and class II element transposases have a common ancestor?
inferredcites →https://doi.org/10.1038/284601a0openalex-snapshot
Selfish genes, the phenotype paradigm and genome evolution
inferredcites →https://doi.org/10.1038/hdy.2008.49openalex-snapshot
Genome size diversity in the family Drosophilidae
inferredcites →https://doi.org/10.1038/nature06341openalex-snapshot
Evolution of genes and genomes on the Drosophila phylogeny
inferredcites →https://doi.org/10.1038/ng.3254openalex-snapshot
Exploring population size changes using SNP frequency spectra
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nrg1674openalex-snapshot
Synergy between sequence and size in Large-scale genomics
inferredcites →https://doi.org/10.1038/nrg2165openalex-snapshot
A unified classification system for eukaryotic transposable elements
inferredcites →https://doi.org/10.1073/pnas.0702552104openalex-snapshot
Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster
inferredcites →https://doi.org/10.1073/pnas.1500758112openalex-snapshot
The recent invasion of natural Drosophila simulans populations by the P-element
inferredcites →https://doi.org/10.1073/pnas.34.4.137openalex-snapshot
The Suppression of Crossing Over in Inversion Heterozygotes of Drosophila Pseudoobscura
inferredcites →https://doi.org/10.1073/pnas.36.6.344openalex-snapshot
The origin and behavior of mutable loci in maize
inferredcites →https://doi.org/10.1093/aibsbulletin/2.2.14-bopenalex-snapshot
Genetics and the Origin of Species
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/124.2.339openalex-snapshot
Evidence for horizontal transmission of the P transposable element between Drosophila species.
inferredcites →https://doi.org/10.1093/genetics/129.4.1085openalex-snapshot
Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: genome structure and evolution.
inferredcites →https://doi.org/10.1093/genetics/137.3.815openalex-snapshot
Transposable element numbers in cosmopolitan inversions from a natural population of Drosophila melanogaster.
inferredcites →https://doi.org/10.1093/genetics/147.4.1993openalex-snapshot
Transposable Element Distributions in Drosophila
inferredcites →https://doi.org/10.1093/genetics/23.1.28openalex-snapshot
INVERSIONS IN THE CHROMOSOMES OF DROSOPHILA PSEUDOOBSCURA
inferredcites →https://doi.org/10.1093/genetics/38.6.579openalex-snapshot
INDUCTION OF INSTABILITY AT SELECTED LOCI IN MAIZE
inferredcites →https://doi.org/10.1093/jhered/esh050openalex-snapshot
Accumulation of Transposable Elements in the Genome of Drosophila melanogaster is Associated with a Decrease in Fitness
inferredcites →https://doi.org/10.1093/molbev/msg102openalex-snapshot
Size Matters: Non-LTR Retrotransposable Elements and Ectopic Recombination in Drosophila
inferredcites →https://doi.org/10.1093/molbev/msq337openalex-snapshot
Population Genomics of Transposable Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1093/molbev/msr039openalex-snapshot
Evolutionary History of the Third Chromosome Gene Arrangements of Drosophila pseudoobscura Inferred from Inversion Breakpoints
inferredcites →https://doi.org/10.1093/molbev/mss206openalex-snapshot
The Diversity of Class II Transposable Elements in Mammalian Genomes Has Arisen from Ancestral Phylogenetic Splits during Ancient Waves of Proliferation through the Genome
inferredcites →https://doi.org/10.1093/molbev/msw137openalex-snapshot
PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq
inferredcites →https://doi.org/10.1093/molbev/msz059openalex-snapshot
The Genome of Drosophila innubila Reveals Lineage-Specific Patterns of Selection in Immune Genes
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gku1099openalex-snapshot
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
inferredcites →https://doi.org/10.1093/nar/gkv1193openalex-snapshot
Unique transposon landscapes are pervasive acrossDrosophila melanogastergenomes
inferredcites →https://doi.org/10.1093/nar/gkw1016openalex-snapshot
FlyBase at 25: looking to the future
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040530openalex-snapshot
The transposable portion of the genome of Drosophila algonquin is very different from that in D. melanogaster.
inferredcites →https://doi.org/10.1098/rsbl.2016.0407openalex-snapshot
Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies
inferredcites →https://doi.org/10.1098/rstb.2008.0168openalex-snapshot
The evolution of RNAi as a defence against viruses and transposable elements
inferredcites →https://doi.org/10.1098/rstb.2009.0318openalex-snapshot
Transposable elements in natural populations of Drosophila melanogaster
inferredcites →https://doi.org/10.1101/gad.267252.115openalex-snapshot
piRNA-guided slicing of transposon transcripts enforces their transcriptional silencing via specifying the nuclear piRNA repertoire
inferredcites →https://doi.org/10.1101/gr.095406.109openalex-snapshot
Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03249.xopenalex-snapshot
The evolution of seeds
inferredcites →https://doi.org/10.1111/mec.14961openalex-snapshot
Patterns of transposable element variation and clinality in Drosophila
inferredcites →https://doi.org/10.1126/science.1089370openalex-snapshot
The Origins of Genome Complexity
inferredcites →https://doi.org/10.1126/science.1146484openalex-snapshot
The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race
inferredcites →https://doi.org/10.1126/science.1165171openalex-snapshot
An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
inferredcites →https://doi.org/10.1146/annurev.ge.23.120189.001343openalex-snapshot
THE POPULATION GENETICS OF DROSOPHILA TRANSPOSABLE ELEMENTS
inferredcites →https://doi.org/10.1146/annurev.genet.38.072902.093115openalex-snapshot
Retrotransposons Provide an Evolutionarily Robust Non-Telomerase Mechanism to Maintain Telomeres
inferredcites →https://doi.org/10.1186/1471-2105-7-474openalex-snapshot
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
inferredcites →https://doi.org/10.1186/gb-2002-3-12-research0084openalex-snapshot
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
inferredcites →https://doi.org/10.1186/gb-2002-3-2-reviews0003openalex-snapshot
Exploring prokaryotic diversity in the genomic era.
inferredcites →https://doi.org/10.1186/gb-2009-10-2-r22openalex-snapshot
Widespread evidence for horizontal transfer of transposable elements across Drosophilagenomes
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13100-015-0035-7openalex-snapshot
HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
inferredcites →https://doi.org/10.1186/s13100-018-0123-6openalex-snapshot
Extensive exchange of transposable elements in the Drosophila pseudoobscura group
inferredcites →https://doi.org/10.12688/f1000research.6090.1openalex-snapshot
Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents.
inferredcites →https://doi.org/10.1371/journal.pbio.1001239openalex-snapshot
Hedgehog-Regulated Ubiquitination Controls Smoothened Trafficking and Cell Surface Expression in Drosophila
inferredcites →https://doi.org/10.1371/journal.pbio.1001422openalex-snapshot
Recombination Modulates How Selection Affects Linked Sites in Drosophila
inferredcites →https://doi.org/10.1371/journal.pcbi.0010022openalex-snapshot
Combined Evidence Annotation of Transposable Elements in Genome Sequences
inferredcites →https://doi.org/10.1371/journal.pgen.1002487openalex-snapshot
Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1002805openalex-snapshot
A Genome-Wide Association Meta-Analysis of Circulating Sex Hormone–Binding Globulin Reveals Multiple Loci Implicated in Sex Steroid Hormone Regulation
inferredcites →https://doi.org/10.1371/journal.pgen.1004982openalex-snapshot
Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
inferredcites →https://doi.org/10.1371/journal.pgen.1005269openalex-snapshot
The Role of piRNA-Mediated Epigenetic Silencing in the Population Dynamics of Transposable Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1005406openalex-snapshot
Tempo and Mode of Transposable Element Activity in Drosophila
inferredcites →https://doi.org/10.1371/journal.pone.0015925openalex-snapshot
PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
inferredcites →https://doi.org/10.1371/journal.pone.0030008openalex-snapshot
Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pone.0128036openalex-snapshot
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
inferredcites →https://doi.org/10.1534/g3.117.040907openalex-snapshot
Retrotransposons Are the Major Contributors to the Expansion of theDrosophila ananassaeMuller F Element
inferredcites →https://doi.org/10.1534/genetics.107.074112openalex-snapshot
Drosophila Biology in the Genomic Age
inferredcites →https://doi.org/10.1534/genetics.112.145714openalex-snapshot
Long-Term and Short-Term Evolutionary Impacts of Transposable Elements onDrosophila
inferredcites →https://doi.org/10.1534/genetics.116.191429openalex-snapshot
Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.7554/elife.03671openalex-snapshot
Quantitative analysis of mammalian GIRK2 channel regulation by G proteins, the signaling lipid PIP2 and Na+ in a reconstituted system
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108486openalex-snapshot
Harnessing transposable elements: A new frontier in insect systematics
inferred← citeshttps://doi.org/10.1093/molbev/msab155openalex-snapshot
The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions
inferred← citeshttps://doi.org/10.1186/s12915-025-02370-0openalex-snapshot
The impact of insertion bias into piRNA clusters on the invasion of transposable elements
inferred← citeshttps://doi.org/10.1186/s13100-020-00213-zopenalex-snapshot
Transposable elements in Drosophila
inferred← citeshttps://doi.org/10.1186/s13100-022-00270-6openalex-snapshot
Characterization of transposable elements within the Bemisia tabaci species complex
inferred← citeshttps://doi.org/10.3390/cells9102180openalex-snapshot
Diverse Defenses: A Perspective Comparing Dipteran Piwi-piRNA Pathways
inferred← citeshttps://doi.org/10.3390/life12040521openalex-snapshot
Satellitome Analysis and Transposable Elements Comparison in Geographically Distant Populations of Spodoptera frugiperda
inferred← citeshttps://doi.org/10.70675/00dbd2ffz4271z4c8bz8b6azd41857860271openalex-snapshot
Dynamique des éléments transposables chez Drosophila suzukii
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