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Patterns of transposable element variation and clinality in Drosophila

https://doi.org/10.1111/mec.14961
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Historical Biogeography of the Drosophila melanogaster Species Subgroup
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Climatic selection on genes and traits after a 100 year-old invasion: a critical look at the temperate-tropical clines in Drosophila melanogaster from eastern Australia
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Genetic variation of Drosophila melanogaster natural populations
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Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
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Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
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The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing
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Revisiting classic clines in Drosophila melanogaster in the age of genomics
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Targeting Survival
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The population dynamics of transposable elements
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Clines in polygenic traits
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Comparative Analysis of Morphological Traits Among Drosophila Melanogaster and D. Simulans: Genetic Variability, Clines and Phenotypic Plasticity
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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
inferredcites →https://doi.org/10.1038/nature17951openalex-snapshot
The industrial melanism mutation in British peppered moths is a transposable element
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Transposable element islands facilitate adaptation to novel environments in an invasive species
inferredcites →https://doi.org/10.1073/pnas.0303793101openalex-snapshot
Strong selective sweep associated with a transposon insertion in Drosophila simulans
inferredcites →https://doi.org/10.1073/pnas.0732024100openalex-snapshot
Molecular paleontology of transposable elements in the Drosophila melanogaster genome
inferredcites →https://doi.org/10.1073/pnas.1036705100openalex-snapshot
Controlling integration specificity of a yeast retrotransposon
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
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PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
inferredcites →https://doi.org/10.1093/gbe/evq086openalex-snapshot
Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species
inferredcites →https://doi.org/10.1093/gbe/evx050openalex-snapshot
Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster
inferredcites →https://doi.org/10.1093/genetics/119.4.875openalex-snapshot
The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence.
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Patterns of naturally occurring restriction map variation, dopa decarboxylase activity variation and linkage disequilibrium in the Ddc gene region of Drosophila melanogaster.
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Molecular analysis of an allozyme cline: alcohol dehydrogenase in Drosophila melanogaster on the east coast of North America.
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Cellular basis and developmental timing in a size cline of Drosophila melanogaster.
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Differences in Crossover Frequency and Distribution Among Three Sibling Species of Drosophila
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Clinal Variation for Amino Acid Polymorphisms at the Pgm Locus in Drosophila melanogaster
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Genetic Differentiation Between American and European Drosophila melanogaster Populations Could Be Attributed to Admixture of African Alleles
inferredcites →https://doi.org/10.1093/molbev/mst129openalex-snapshot
Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources
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Exploring the Phenotypic Space and the Evolutionary History of a Natural Mutation in Drosophila melanogaster
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The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions
inferredcites →https://doi.org/10.1093/molbev/msw014openalex-snapshot
Parallel Evolution of Copy-Number Variation across Continents inDrosophila melanogaster
inferredcites →https://doi.org/10.1093/molbev/msw137openalex-snapshot
PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq
inferredcites →https://doi.org/10.1093/nar/gku1099openalex-snapshot
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
inferredcites →https://doi.org/10.1093/nar/gku323openalex-snapshot
TEMP: a computational method for analyzing transposable element polymorphism in populations
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A temperature cline in copy number for 412 but not roo/B104 retrotransposons in populations of Drosophila simulans
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1101/gr.110098.110openalex-snapshot
Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
inferredcites →https://doi.org/10.1101/gr.210802openalex-snapshot
Recombination Rate and the Distribution of Transposable Elements in the Drosophila melanogaster Genome
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05731.xopenalex-snapshot
Genome‐wide patterns of latitudinal differentiation among populations of D rosophila melanogaster from N orth A merica
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Transposon-mediated resistance to Bacillus sphaericus in a field-evolved population of Culex pipiens (Diptera: Culicidae)
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GEOGRAPHIC VARIATION, SPECIATION, AND CLINES
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb05666.xopenalex-snapshot
LATITUDINAL CLINE INDROSOPHILA MELANOGASTERFOR KNOCKDOWN RESISTANCE TO ETHANOL FUMES AND FOR RATES OF RESPONSE TO SELECTION FOR FURTHER RESISTANCE
inferredcites →https://doi.org/10.1111/j.1558-5646.1996.tb03621.xopenalex-snapshot
THERMAL EVOLUTION OF EGG SIZE INDROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00351.xopenalex-snapshot
REPRODUCTIVE DIAPAUSE AND LIFE-HISTORY CLINES IN NORTH AMERICAN POPULATIONS OF DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/mec.12170openalex-snapshot
The impact of transposable elements in environmental adaptation
inferredcites →https://doi.org/10.1111/mec.13137openalex-snapshot
Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south‐eastern United States and Caribbean Islands
inferredcites →https://doi.org/10.1111/mec.13446openalex-snapshot
Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.13455openalex-snapshot
Secondary contact and local adaptation contribute to genome‐wide patterns of clinal variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1126/science.1074170openalex-snapshot
A Single P450 Allele Associated with Insecticide Resistance in Drosophila
inferredcites →https://doi.org/10.1126/science.1131002openalex-snapshot
Global Genetic Change Tracks Global Climate Warming in Drosophila subobscura
inferredcites →https://doi.org/10.1126/science.179.4070.243openalex-snapshot
Gene Flow and Population Differentiation
inferredcites →https://doi.org/10.1126/science.226.4670.53openalex-snapshot
Temperature Effects on the Rate of Ty Transposition
inferredcites →https://doi.org/10.1128/mcb.21.19.6606-6614.2001openalex-snapshot
Targeting of the Yeast Ty5 Retrotransposon to Silent Chromatin Is Mediated by Interactions between Integrase and Sir4p
inferredcites →https://doi.org/10.1128/microbiolspec.mdna3-0049-2014openalex-snapshot
Helitrons , the Eukaryotic Rolling-circle Transposable Elements
inferredcites →https://doi.org/10.1142/9789814447973_0034openalex-snapshot
DETECTING HIGHLY DIFFERENTIATED COPY-NUMBER VARIANTS FROM POOLED POPULATION SEQUENCING
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134802openalex-snapshot
Multiple Roles for Heterochromatin Protein 1 Genes in Drosophila
inferredcites →https://doi.org/10.1146/annurev-genet-120213-092359openalex-snapshot
Population Genomics of Transposable Elements in Drosophila
inferredcites →https://doi.org/10.1146/annurev.ge.23.120189.001343openalex-snapshot
THE POPULATION GENETICS OF DROSOPHILA TRANSPOSABLE ELEMENTS
inferredcites →https://doi.org/10.1186/1759-8753-5-18openalex-snapshot
DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons)
inferredcites →https://doi.org/10.1186/s12862-015-0316-2openalex-snapshot
Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.0030210openalex-snapshot
Genome Organization and Gene Expression Shape the Transposable Element Distribution in the Drosophila melanogaster Euchromatin
inferredcites →https://doi.org/10.1371/journal.pgen.1000905openalex-snapshot
Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1000998openalex-snapshot
Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus
inferredcites →https://doi.org/10.1371/journal.pgen.1002337openalex-snapshot
Successive Increases in the Resistance of Drosophila to Viral Infection through a Transposon Insertion Followed by a Duplication
inferredcites →https://doi.org/10.1371/journal.pgen.1002905openalex-snapshot
The Many Landscapes of Recombination in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003056openalex-snapshot
Population Genomics of Inversion Polymorphisms in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003534openalex-snapshot
A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1004775openalex-snapshot
Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1005184openalex-snapshot
Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans
inferredcites →https://doi.org/10.1371/journal.pgen.1005269openalex-snapshot
The Role of piRNA-Mediated Epigenetic Silencing in the Population Dynamics of Transposable Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1005406openalex-snapshot
Tempo and Mode of Transposable Element Activity in Drosophila
inferredcites →https://doi.org/10.1371/journal.pgen.1005869openalex-snapshot
The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1007162openalex-snapshot
Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays
inferredcites →https://doi.org/10.1534/genetics.106.059881openalex-snapshot
The Adaptive Hypothesis of Clinal Variation Revisited: Single-Locus Clines as a Result of Spatially Restricted Gene Flow
inferredcites →https://doi.org/10.1534/genetics.107.083659openalex-snapshot
Genomic Analysis of Adaptive Differentiation inDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.110.123059openalex-snapshot
Genomic Differentiation Between Temperate and Tropical Australian Populations ofDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.114.161463openalex-snapshot
Parallel Geographic Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.114.170837openalex-snapshot
Gene Expression Variation inDrosophila melanogasterDue to Rare Transposable Element Insertion Alleles of Large Effect
inferredcites →https://doi.org/10.1534/genetics.115.185496openalex-snapshot
Genomic Patterns of Geographic Differentiation in Drosophila simulans
inferredcites →https://doi.org/10.1534/genetics.116.195750openalex-snapshot
Pleiotropic Effects of Loss of the Dα1 Subunit in Drosophila melanogaster: Implications for Insecticide Resistance
inferredcites →https://doi.org/10.2307/2413313openalex-snapshot
Natural Selection in the Wild.
inferredcites →https://doi.org/10.7554/elife.25762openalex-snapshot
Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Disrupting the disruptors: the consequences of mutations in mobile elements for ecologically important life history traits
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inferred← citeshttps://doi.org/10.1093/g3journal/jkab050openalex-snapshot
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Reconstructing the Invasion Route of the P-Element inDrosophila melanogasterUsing Extant Population Samples
inferred← citeshttps://doi.org/10.1093/genetics/iyae099openalex-snapshot
Genome size and chromosome number are critical metrics for accurate genome assembly assessment in Eukaryota
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Parallel transcriptome adaptation during recent evolution of the Drosophila testis
inferred← citeshttps://doi.org/10.1101/2020.09.21.307181openalex-snapshot
Engines of change: Transposable element mutation rates are high and vary widely among genotypes and populations of Daphnia magna
inferred← citeshttps://doi.org/10.1101/2025.11.28.691231openalex-snapshot
Gene flow erodes spatial genomic clines while selection preserves adaptive loci over hundreds of generations
inferred← citeshttps://doi.org/10.1101/651059openalex-snapshot
Transposable element dynamics are consistent across the Drosophila phylogeny, despite drastically differing content
inferred← citeshttps://doi.org/10.1101/729889openalex-snapshot
Reconstructing the invasion route of DNA transposons using extant population samples
inferred← citeshttps://doi.org/10.1111/mec.15066openalex-snapshot
Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification
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Genomic architecture of phenotypic extremes in a wild cervid
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Modes of natural selection on maternal and zygotic gene expression in Drosophila melanogaster embryos
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