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Microbial dysbiosis and its implications for disease in a genetically depauperate species

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Habitat fragmentation is associated with dietary shifts and microbiota variability in common vampire bats

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Conserve the germs: the gut microbiota and adaptive potential

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The Role of the Skin Microbiome in Atopic Dermatitis

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Genomic Flatlining in the Endangered Island Fox

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Tumors and Tumorlike Lesions of Dog and Cat Ears

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Microbial Dysbiosis in Common Variable Immune Deficiencies: Evidence, Causes, and Consequences

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Longitudinal Evaluation of the Skin Microbiome and Association with Microenvironment and Treatment in Canine Atopic Dermatitis

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Methicillin-resistant Staphylococcus aureus and Staphylococcus pseudintermedius in veterinary medicine

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Basic Local Alignment Search Tool

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The microbiota in adaptive immune homeostasis and disease

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DADA2: High-resolution sample inference from Illumina amplicon data

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QIIME allows analysis of high-throughput community sequencing data

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Microbiota-mediated colonization resistance against intestinal pathogens

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Analysis and comparison of the wolf microbiome under different environmental factors using three different data of Next Generation Sequencing

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A new method for non-parametric multivariate analysis of variance

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Methicillin-Resistant Staphylococcus aureus

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High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammal

inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

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Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices

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Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

inferredcites →https://doi.org/10.1109/mcse.2007.55openalex-snapshot

Matplotlib: A 2D Graphics Environment

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Toward an integrative molecular approach to wildlife disease

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Staphylococcal colonization of mucosal and lesional skin sites in atopic and healthy dogs

inferredcites →https://doi.org/10.1111/j.1365-3164.2012.01046.xopenalex-snapshot

Staphylococcus pseudintermediusin the dog: taxonomy, diagnostics, ecology, epidemiology and pathogenicity

inferredcites →https://doi.org/10.1111/j.1442-9993.2001.01070.pp.xopenalex-snapshot

A new method for non‐parametric multivariate analysis of variance

inferredcites →https://doi.org/10.1111/mec.13181openalex-snapshot

Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology

inferredcites →https://doi.org/10.1111/mec.14532openalex-snapshot

The ecosystem services of animal microbiomes

inferredcites →https://doi.org/10.1111/mec.14706openalex-snapshot

Introduction: The host‐associated microbiome: Pattern, process and function

inferredcites →https://doi.org/10.1111/mec.14860openalex-snapshot

Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

inferredcites →https://doi.org/10.1111/mec.15070openalex-snapshot

Fur seal microbiota are shaped by the social and physical environment, show mother–offspring similarities and are associated with host genetic quality

inferredcites →https://doi.org/10.1111/vde.12674openalex-snapshot

Ear canal microbiota – a comparison between healthy dogs and atopic dogs without clinical signs of otitis externa

inferredcites →https://doi.org/10.1126/science.1225152openalex-snapshot

Compartmentalized Control of Skin Immunity by Resident Commensals

inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

inferredcites →https://doi.org/10.1128/jcm.01915-08openalex-snapshot

Molecular Diagnostic Identification of Staphylococcus pseudintermedius

inferredcites →https://doi.org/10.1128/jcm.02193-06openalex-snapshot

Methicillin-Resistant Staphylococcus pseudintermedius in a Veterinary Teaching Hospital

inferredcites →https://doi.org/10.1128/msystems.00162-16openalex-snapshot

Balance Trees Reveal Microbial Niche Differentiation

inferredcites →https://doi.org/10.1146/annurev-immunol-020711-074937openalex-snapshot

The Microbiome in Infectious Disease and Inflammation

inferredcites →https://doi.org/10.1186/2047-217x-2-16openalex-snapshot

EMPeror: a tool for visualizing high-throughput microbial community data

inferredcites →https://doi.org/10.1186/s12866-015-0449-xopenalex-snapshot

New insights in Staphylococcus pseudintermedius pathogenicity: antibiotic-resistant biofilm formation by a human wound-associated strain

inferredcites →https://doi.org/10.1186/s12866-018-1154-3openalex-snapshot

A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera

inferredcites →https://doi.org/10.1186/s40168-015-0143-0openalex-snapshot

The Tasmanian devil microbiome—implications for conservation and management

inferredcites →https://doi.org/10.1186/s40168-018-0470-zopenalex-snapshot

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

inferredcites →https://doi.org/10.1214/aos/1013699998openalex-snapshot

The control of the false discovery rate in multiple testing under dependency

inferredcites →https://doi.org/10.1371/journal.pntd.0002897openalex-snapshot

Scabies Mites Alter the Skin Microbiome and Promote Growth of Opportunistic Pathogens in a Porcine Model

inferredcites →https://doi.org/10.1371/journal.pone.0083197openalex-snapshot

The Skin Microbiome in Healthy and Allergic Dogs

inferredcites →https://doi.org/10.1371/journal.pone.0090785openalex-snapshot

Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals?

inferredcites →https://doi.org/10.1371/journal.pone.0131080openalex-snapshot

Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps

inferredcites →https://doi.org/10.1371/journal.pone.0143211openalex-snapshot

Pathology and Epidemiology of Ceruminous Gland Tumors among Endangered Santa Catalina Island Foxes (Urocyon littoralis catalinae) in the Channel Islands, USA

inferredcites →https://doi.org/10.1371/journal.pone.0144271openalex-snapshot

Ear Mite Removal in the Santa Catalina Island Fox (Urocyon littoralis catalinae): Controlling Risk Factors for Cancer Development

inferredcites →https://doi.org/10.1525/9780520353947openalex-snapshot

Natural History of the Islands of California

inferredcites →https://doi.org/10.2307/1376612openalex-snapshot

Age Structure and Productivity of a Gray Fox Population

inferredcites →https://doi.org/10.2460/javma.1996.208.09.1413openalex-snapshot

Evaluation of dogs and cats with tumors of the ear canal: 145 cases (1978-1992)

inferredcites →https://doi.org/10.3389/fmicb.2016.01753openalex-snapshot

Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment

inferredcites →https://doi.org/10.3398/042.007.0129openalex-snapshot

Status of the Santa Catalina Island Fox Thirteen Years after Its Decline

inferredcites →https://doi.org/10.3402/mehd.v26.27663openalex-snapshot

Analysis of composition of microbiomes: a novel method for studying microbial composition

inferredcites →https://doi.org/10.7589/0090-3558-45.2.333openalex-snapshot

A SUSPECTED CANINE DISTEMPER EPIDEMIC AS THE CAUSE OF A CATASTROPHIC DECLINE IN SANTA CATALINA ISLAND FOXES (UROCYON LITTORALIS CATALINAE)

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1186/s13071-019-3724-0openalex-snapshot

Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites

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