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A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

https://doi.org/10.1101/665661
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/anbo.1996.0083openalex-snapshot
Tissue-specific Soluble Sugars in Seeds as Indicators of Storage Category
inferredcites →https://doi.org/10.1007/978-1-4614-4693-4openalex-snapshot
Seeds: Physiology of Development, Germination and Dormancy, 3rd Edition
inferredcites →https://doi.org/10.1007/bf00024564openalex-snapshot
Proteins in development and germination of a desiccation sensitive (recalcitrant) seed species
inferredcites →https://doi.org/10.1007/s00114-007-0254-yopenalex-snapshot
The continuing conundrum of the LEA proteins
inferredcites →https://doi.org/10.1007/s00425-014-2089-zopenalex-snapshot
Functional characterization of selected LEA proteins from Arabidopsis thaliana in yeast and in vitro
inferredcites →https://doi.org/10.1007/s00425-014-2240-xopenalex-snapshot
Acquisition and loss of desiccation tolerance in seeds: from experimental model to biological relevance
inferredcites →https://doi.org/10.1007/s00709-011-0274-5openalex-snapshot
The effects of various parameters during processing for cryopreservation on the ultrastructure and viability of recalcitrant zygotic embryos of Amaryllis belladonna
inferredcites →https://doi.org/10.1016/j.cell.2008.12.026openalex-snapshot
Two Novel GPCR-Type G Proteins Are Abscisic Acid Receptors in Arabidopsis
inferredcites →https://doi.org/10.1016/j.devcel.2010.10.010openalex-snapshot
Integration of Brassinosteroid Signal Transduction with the Transcription Network for Plant Growth Regulation in Arabidopsis
inferredcites →https://doi.org/10.1016/j.pbi.2012.03.011openalex-snapshot
Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model
inferredcites →https://doi.org/10.1016/j.phytochem.2014.05.015openalex-snapshot
UHPLC–MS/MS based target profiling of stress-induced phytohormones
inferredcites →https://doi.org/10.1016/j.plaphy.2005.04.005openalex-snapshot
Development and composition of the seeds of nine genotypes of the Medicago truncatula species complex
inferredcites →https://doi.org/10.1016/j.plaphy.2006.09.002openalex-snapshot
Enzymatic and non-enzymatic protective mechanisms in recalcitrant seeds of Araucaria bidwillii subjected to desiccation
inferredcites →https://doi.org/10.1016/j.tree.2009.03.010openalex-snapshot
Relaxed selection in the wild
inferredcites →https://doi.org/10.1017/s0960258500001513openalex-snapshot
Seed development in relation to desiccation tolerance: A comparison between desiccation-sensitive (recalcitrant) seeds of Avicennia marina and desiccation-tolerant types
inferredcites →https://doi.org/10.1017/s0960258500001562openalex-snapshot
The role of plant growth regulators in the development and germination of the desiccation-sensitive (recalcitrant) seeds of Avicennia marina
inferredcites →https://doi.org/10.1038/nature14123openalex-snapshot
Agrochemical control of plant water use using engineered abscisic acid receptors
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nplants.2017.38openalex-snapshot
A footprint of desiccation tolerance in the genome of Xerophyta viscosa
inferredcites →https://doi.org/10.1038/srep31900openalex-snapshot
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
inferredcites →https://doi.org/10.1071/fp18022openalex-snapshot
Evolutionary ecophysiology of seed desiccation sensitivity
inferredcites →https://doi.org/10.1073/pnas.0508418102openalex-snapshot
MINISEED3 ( MINI3 ), a WRKY family gene, and HAIKU2 ( IKU2 ), a leucine-rich repeat ( LRR ) KINASE gene, are regulators of seed size in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.0706851105openalex-snapshot
Maps of random walks on complex networks reveal community structure
inferredcites →https://doi.org/10.1073/pnas.1301647110openalex-snapshot
Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA
inferredcites →https://doi.org/10.1073/pnas.152337599openalex-snapshot
A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development
inferredcites →https://doi.org/10.1079/9781845939953.0238openalex-snapshot
Desiccation tolerance.
inferredcites →https://doi.org/10.1093/aob/mcl022openalex-snapshot
Prediction of Desiccation Sensitivity in Seeds of Woody Species: A Probabilistic Model Based on Two Seed Traits and 104 Species
inferredcites →https://doi.org/10.1093/aob/mcm168openalex-snapshot
From Avicennia to Zizania: Seed Recalcitrance in Perspective
inferredcites →https://doi.org/10.1093/bioinformatics/bti551openalex-snapshot
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
inferredcites →https://doi.org/10.1093/bioinformatics/btq609openalex-snapshot
Assigning duplication events to relative temporal scales in genome-wide studies
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/genetics/112.4.887openalex-snapshot
TOWARD A SATURATED LINKAGE MAP IN TOMATO BASED ON ISOZYMES AND RANDOM cDNA SEQUENCES
inferredcites →https://doi.org/10.1093/jxb/ert274openalex-snapshot
LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance
inferredcites →https://doi.org/10.1093/jxb/erw363openalex-snapshot
Late seed maturation: drying without dying
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/mst192openalex-snapshot
Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS
inferredcites →https://doi.org/10.1093/nar/gkq742openalex-snapshot
Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity
inferredcites →https://doi.org/10.1093/nar/gkr1293openalex-snapshot
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
inferredcites →https://doi.org/10.1093/nar/gkt1177openalex-snapshot
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
inferredcites →https://doi.org/10.1104/pp.113.222380openalex-snapshot
A Regulatory Network-Based Approach Dissects Late Maturation Processes Related to the Acquisition of Desiccation Tolerance and Longevity of Medicago truncatula Seeds
inferredcites →https://doi.org/10.1104/pp.125.2.763openalex-snapshot
A Role for Brassinosteroids in Germination in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.109.068627openalex-snapshot
VERDANDI Is a Direct Target of the MADS Domain Ovule Identity Complex and Affects Embryo Sac Differentiation in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.15.00632openalex-snapshot
Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways
inferredcites →https://doi.org/10.1105/tpc.16.00470openalex-snapshot
ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes
inferredcites →https://doi.org/10.1105/tpc.17.00312openalex-snapshot
Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation
inferredcites →https://doi.org/10.1111/j.1365-3040.2012.02501.xopenalex-snapshot
Temporal profiling of the heat‐stable proteome during late maturation of Medicago truncatula seeds identifies a restricted subset of late embryogenesis abundant proteins associated with longevity
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03116.xopenalex-snapshot
The regulatory gamma subunit SNF4b of the sucrose non‐fermenting‐related kinase complex is involved in longevity and stachyose accumulation during maturation of Medicago truncatula seeds
inferredcites →https://doi.org/10.1111/j.1442-1984.2011.00353.xopenalex-snapshot
A comparative study of seed morphology in relation to desiccation tolerance and other physiological responses in 71 Eastern Australian rainforest species
inferredcites →https://doi.org/10.1111/pce.13027openalex-snapshot
Seed desiccation mechanisms co‐opted for vegetative desiccation in the resurrection grass Oropetium thomaeum
inferredcites →https://doi.org/10.1126/science.289.5476.85openalex-snapshot
fw2.2 : A Quantitative Trait Locus Key to the Evolution of Tomato Fruit Size
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/1471-2105-13-238openalex-snapshot
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
inferredcites →https://doi.org/10.1186/1471-2105-13-s4-s1openalex-snapshot
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
inferredcites →https://doi.org/10.1186/1471-2105-15-211openalex-snapshot
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
inferredcites →https://doi.org/10.1186/1471-2164-9-118openalex-snapshot
LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/s13059-014-0509-9openalex-snapshot
Lighter: fast and memory-efficient sequencing error correction without counting
inferredcites →https://doi.org/10.1199/tab.0166openalex-snapshot
Abscisic Acid Synthesis and Response
inferredcites →https://doi.org/10.1242/dev.134916openalex-snapshot
Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis
inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot
Accelerated Profile HMM Searches
inferredcites →https://doi.org/10.1371/journal.pgen.1003790openalex-snapshot
Genome-Wide Analysis of ZmDREB Genes and Their Association with Natural Variation in Drought Tolerance at Seedling Stage of Zea mays L
inferredcites →https://doi.org/10.1371/journal.pgen.1004197openalex-snapshot
Convergence of Light and ABA Signaling on the ABI5 Promoter
inferredcites →https://doi.org/10.1371/journal.pone.0035495openalex-snapshot
Perceptions and Experiences of Research Participants on Gender-Based Violence Community Based Survey: Implications for Ethical Guidelines
inferredcites →https://doi.org/10.1371/journal.pone.0067434openalex-snapshot
LegumeGRN: A Gene Regulatory Network Prediction Server for Functional and Comparative Studies
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.3389/fpls.2013.00001openalex-snapshot
Rapid phosphatidic acid accumulation in response to low temperature stress in Arabidopsis is generated through diacylglycerol kinase
inferredcites →https://doi.org/10.3389/fpls.2013.00478openalex-snapshot
Implications of the lack of desiccation tolerance in recalcitrant seeds
inferredcites →https://doi.org/10.3389/fpls.2013.00497openalex-snapshot
An emerging picture of the seed desiccome: confirmed regulators and newcomers identified using transcriptome comparison
inferredcites →https://doi.org/10.3732/ajb.1200380openalex-snapshot
Revisiting the phylogeny of papilionoid legumes: New insights from comprehensively sampled early‐branching lineages
inferredcites →https://doi.org/10.4161/15592316.2014.972899openalex-snapshot
A hub for ABA signaling to the nucleus: Significance of a cytosolic and nuclear dual-localized PPR protein SOAR1 acting downstream of Mg-chelatase H subunit
inferredcites →https://doi.org/10.4161/psb.5.10.12808openalex-snapshot
Evolution of FW2.2-like (FWL) and PLAC8 genes in eukaryotes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1017/s0960258520000185openalex-snapshot
Storage of short-lived seeds of Inga vera subsp. affinis in osmotic medium
inferred← citeshttps://doi.org/10.1111/brv.12855openalex-snapshot
Fire‐released seed dormancy ‐ a global synthesis
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