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DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Next Generation Sequence Assembly with AMOS
inferredcites →https://doi.org/10.1007/978-3-642-40453-5_27openalex-snapshot
Cerulean: A Hybrid Assembly Using High Throughput Short and Long Reads
inferredcites →https://doi.org/10.1007/978-3-662-44753-6openalex-snapshot
Algorithms in Bioinformatics
inferredcites →https://doi.org/10.1007/978-3-662-44753-6_5openalex-snapshot
Efficient Local Alignment Discovery amongst Noisy Long Reads
inferredcites →https://doi.org/10.1016/0022-2836(81)90087-5openalex-snapshot
Identification of common molecular subsequences
inferredcites →https://doi.org/10.1016/j.bdq.2015.02.001openalex-snapshot
Assessing the performance of the Oxford Nanopore Technologies MinION
inferredcites →https://doi.org/10.1016/j.mib.2014.11.014openalex-snapshot
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
inferredcites →https://doi.org/10.1038/nbt.2280openalex-snapshot
Hybrid error correction and de novo assembly of single-molecule sequencing reads
inferredcites →https://doi.org/10.1038/nbt.2288openalex-snapshot
A hybrid approach for the automated finishing of bacterial genomes
inferredcites →https://doi.org/10.1038/nbt.2432openalex-snapshot
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
inferredcites →https://doi.org/10.1038/nbt.3238openalex-snapshot
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
inferredcites →https://doi.org/10.1073/pnas.171285098openalex-snapshot
An Eulerian path approach to DNA fragment assembly
inferredcites →https://doi.org/10.1089/cmb.1999.6.163openalex-snapshot
AMASS: A Structured Pattern Matching Approach to Shotgun Sequence Assembly
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/bti1114openalex-snapshot
The fragment assembly string graph
inferredcites →https://doi.org/10.1093/bioinformatics/btn548openalex-snapshot
Aggressive assembly of pyrosequencing reads with mates
inferredcites →https://doi.org/10.1093/bioinformatics/btq697openalex-snapshot
Succinct data structures for assembling large genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot
The MaSuRCA genome assembler
inferredcites →https://doi.org/10.1093/bioinformatics/btu392openalex-snapshot
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
inferredcites →https://doi.org/10.1093/bioinformatics/btu538openalex-snapshot
LoRDEC: accurate and efficient long read error correction
inferredcites →https://doi.org/10.1101/006395openalex-snapshot
Error correction and assembly complexity of single molecule sequencing reads
inferredcites →https://doi.org/10.1101/gr.079053.108openalex-snapshot
De novo fragment assembly with short mate-paired reads: Does the read length matter?
inferredcites →https://doi.org/10.1101/gr.126953.111openalex-snapshot
Efficient de novo assembly of large genomes using compressed data structures
inferredcites →https://doi.org/10.1101/gr.136739.111openalex-snapshot
Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases
inferredcites →https://doi.org/10.1101/gr.141515.112openalex-snapshot
Finished bacterial genomes from shotgun sequence data
inferredcites →https://doi.org/10.1101/gr.208902openalex-snapshot
High-Throughput Gene Mapping in Caenorhabditis elegans
inferredcites →https://doi.org/10.1109/sfcs.2000openalex-snapshot
Proceedings 41st Annual Symposium on Foundations of Computer Science
inferredcites →https://doi.org/10.1126/science.1058040openalex-snapshot
The Sequence of the Human Genome
inferredcites →https://doi.org/10.1186/1471-2105-12-333openalex-snapshot
Efficient counting of k-mers in DNA sequences using a bloom filter
inferredcites →https://doi.org/10.1186/1471-2105-13-238openalex-snapshot
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
inferredcites →https://doi.org/10.1186/1471-2105-13-s6-s1openalex-snapshot
Exploiting sparseness in de novo genome assembly
inferredcites →https://doi.org/10.1186/1471-2105-15-211openalex-snapshot
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
inferredcites →https://doi.org/10.1186/1471-2164-14-711openalex-snapshot
Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1371/journal.pone.0046679openalex-snapshot
Improving PacBio Long Read Accuracy by Short Read Alignment
inferredcites →https://doi.org/10.1371/journal.pone.0047768openalex-snapshot
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
inferredcites →https://doi.org/10.1373/clinchem.2014.237016openalex-snapshot
The Sequence of the Human Genome
inferredcites →https://doi.org/10.7717/peerj.2016openalex-snapshot
Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1093/gigascience/giy095openalex-snapshot
Draft genome assembly of the invasive cane toad, Rhinella marina
inferred← citeshttps://doi.org/10.1093/gigascience/giy097openalex-snapshot
The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
inferred← citeshttps://doi.org/10.1093/gigascience/giz113openalex-snapshot
Genome sequence of the Chinese white wax scale insect Ericerus pela: the first draft genome for the Coccidae family of scale insects
inferred← citeshttps://doi.org/10.1093/gigascience/giz157openalex-snapshot
Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy (Coilia nasus) provides novel insights into migratory adaptation
inferred← citeshttps://doi.org/10.1093/icesjms/fsad012openalex-snapshot
Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs
inferred← citeshttps://doi.org/10.1093/jxb/erw500openalex-snapshot
A novel inversion in the chloroplast genome of marama (Tylosema esculentum)
inferred← citeshttps://doi.org/10.1093/molbev/msaa043openalex-snapshot
The genome of Shaw’s sea snake (Hydrophis curtus) reveals secondary adaptation to its marine environment
inferred← citeshttps://doi.org/10.1093/molbev/msaa105openalex-snapshot
Distinct Expression and Methylation Patterns for Genes with Different Fates following a Single Whole-Genome Duplication in Flowering Plants
inferred← citeshttps://doi.org/10.1093/molbev/msaa227openalex-snapshot
Ecological Load and Balancing Selection in Circumboreal Barnacles
inferred← citeshttps://doi.org/10.1093/molbev/msaa326openalex-snapshot
The American Paddlefish Genome Provides Novel Insights into Chromosomal Evolution and Bone Mineralization in Early Vertebrates
inferred← citeshttps://doi.org/10.1093/molbev/msab152openalex-snapshot
A Chromosome-Level Assembly of Blunt Snout Bream (Megalobrama amblycephala) Genome Reveals an Expansion of Olfactory Receptor Genes in Freshwater Fish
inferred← citeshttps://doi.org/10.1093/molbev/msad215openalex-snapshot
A Chromosome-Level Genome Assembly of the Reef Stonefish (Synanceia verrucosa) Provides Novel Insights into Stonustoxin (sntx) Genes
inferred← citeshttps://doi.org/10.1093/molbev/msz010openalex-snapshot
The Genome ofArmadillidium vulgare(Crustacea, Isopoda) Provides Insights into Sex Chromosome Evolution in the Context of Cytoplasmic Sex Determination
inferred← citeshttps://doi.org/10.1093/nar/gkab831openalex-snapshot
MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features
inferred← citeshttps://doi.org/10.1093/nargab/lqac029openalex-snapshot
High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance
inferred← citeshttps://doi.org/10.1093/nsr/nwaa027openalex-snapshot
Convergent adaptation of the genomes of woody plants at the land–sea interface
inferred← citeshttps://doi.org/10.1093/nsr/nwx065openalex-snapshot
The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing
inferred← citeshttps://doi.org/10.1094/mpmi-08-19-0225-aopenalex-snapshot
Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa
inferred← citeshttps://doi.org/10.1098/rspb.2019.2327openalex-snapshot
Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish
inferred← citeshttps://doi.org/10.1098/rspb.2025.3148openalex-snapshot
Geographic divergence in population genomics and shell morphology reveal history of glacial refugia in a coastal dogwhelk
inferred← citeshttps://doi.org/10.1101/067272openalex-snapshot
Improved long read correction for de novo assembly using an FM-index
inferred← citeshttps://doi.org/10.1101/2021.10.18.464293openalex-snapshot
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
inferred← citeshttps://doi.org/10.1101/2021.11.16.468883openalex-snapshot
Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu fish
inferred← citeshttps://doi.org/10.1101/2022.10.16.512445openalex-snapshot
Chromosome-length genome assemblies of cactophilic Drosophila illuminate links between structural and sequence evolution
inferred← citeshttps://doi.org/10.1101/2023.04.18.537422openalex-snapshot
Exhaustive benchmarking of de novo assembly methods for eukaryotic genomes
inferred← citeshttps://doi.org/10.1101/2025.04.13.648612openalex-snapshot
Genomic perspectives on the origins of Galápagos iguanas and the evolution of marine specialisation, DNA damage response and pigmentation adaptations
inferred← citeshttps://doi.org/10.1101/223602openalex-snapshot
Pooled population resequencing of clam shrimp ( Eulimnadia texana ) from different vernal pools reveals signatures of local adaptation
inferred← citeshttps://doi.org/10.1101/533737openalex-snapshot
SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and abundances using DNA barcodes or mitogenomes
inferred← citeshttps://doi.org/10.1101/665661openalex-snapshot
A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe
inferred← citeshttps://doi.org/10.1101/831248openalex-snapshot
TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads
inferred← citeshttps://doi.org/10.1101/gad.328971.119openalex-snapshot
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling
inferred← citeshttps://doi.org/10.1101/gr.215087.116openalex-snapshot
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
inferred← citeshttps://doi.org/10.1101/gr.245001.118openalex-snapshot
Diversification and collapse of a telomere elongation mechanism
inferred← citeshttps://doi.org/10.1105/tpc.17.00521openalex-snapshot
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
inferred← citeshttps://doi.org/10.1109/access.2020.3031159openalex-snapshot
A Review on Sequence Alignment Algorithms for Short Reads Based on Next-Generation Sequencing
inferred← citeshttps://doi.org/10.1109/access.2022.3144113openalex-snapshot
Graph Theoretical Strategies in De Novo Assembly
inferred← citeshttps://doi.org/10.1109/bigdata50022.2020.9377979openalex-snapshot
Distributed de novo assembler for large-scale long-read datasets
inferred← citeshttps://doi.org/10.1109/jproc.2016.2645402openalex-snapshot
Building and Improving Reference Genome Assemblies
inferred← citeshttps://doi.org/10.1111/1462-2920.16101openalex-snapshot
Pathotypes of Fusarium oxysporum f. sp. fragariae express discrete repertoires of accessory genes and induce distinct host transcriptional responses during root infection
inferred← citeshttps://doi.org/10.1111/1749-4877.12673openalex-snapshot
A de novo assembled genome of the Tibetan Partridge (Perdix hodgsoniae) and its high‐altitude adaptation
inferred← citeshttps://doi.org/10.1111/1755-0998.13176openalex-snapshot
Chromosome‐level hybrid de novo genome assemblies as an attainable option for nonmodel insects
inferred← citeshttps://doi.org/10.1111/1755-0998.13446openalex-snapshot
Chromosome‐scale genome assembly of areca palm (Areca catechu)
inferred← citeshttps://doi.org/10.1111/1755-0998.13753openalex-snapshot
Mechanisms of sex differentiation and sex reversal in hermaphrodite fish as revealed by the Epinephelus coioides genome
inferred← citeshttps://doi.org/10.1111/dgd.12608openalex-snapshot
Nanopore sequencing: Review of potential applications in functional genomics
inferred← citeshttps://doi.org/10.1111/evo.14120openalex-snapshot
Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population
inferred← citeshttps://doi.org/10.1111/mec.17651openalex-snapshot
Population Genomics Reveals Local Adaptation Related to Temperature Variation in Two Stream Frog Species: Implications for Vulnerability to Climate Warming
inferred← citeshttps://doi.org/10.1111/pbi.12674openalex-snapshot
Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice
inferred← citeshttps://doi.org/10.1111/tpj.14635openalex-snapshot
Epigenetic patterns within the haplotype phased fig (Ficus carica L.) genome
inferred← citeshttps://doi.org/10.1111/tpj.15100openalex-snapshot
Whole‐genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrow‐leafed lupin
inferred← citeshttps://doi.org/10.1111/tpj.15127openalex-snapshot
The genome of Shanputao ( Vitis amurensis ) provides a new insight into cold tolerance of grapevine
inferred← citeshttps://doi.org/10.1111/tpj.15279openalex-snapshot
High‐quality chromosome‐level genomes of Cucumis metuliferus and Cucumis melo provide insight into Cucumis genome evolution
inferred← citeshttps://doi.org/10.1126/sciadv.aaw6441openalex-snapshot
The genome ofPeromyscus leucopus, natural host for Lyme disease and other emerging infections
inferred← citeshttps://doi.org/10.1126/science.aau0099openalex-snapshot
Males as somatic investment in a parthenogenetic nematode
inferred← citeshttps://doi.org/10.1128/aem.02645-17openalex-snapshot
Genome Analysis of Fimbriiglobus ruber SP5T, a Planctomycete with Confirmed Chitinolytic Capability
inferred← citeshttps://doi.org/10.1128/genomea.00064-17openalex-snapshot
Genome Sequences of Cyberlindnera fabianii 65, Pichia kudriavzevii 129, and Saccharomyces cerevisiae 131 Isolated from Fermented Masau Fruits in Zimbabwe
inferred← citeshttps://doi.org/10.1128/genomea.00122-18openalex-snapshot
Draft Genome Sequence of the Phytopathogenic Fungus Ganoderma boninense, the Causal Agent of Basal Stem Rot Disease on Oil Palm
inferred← citeshttps://doi.org/10.1128/mbio.03853-21openalex-snapshot
Multiple Hybridization Events Punctuate the Evolutionary Trajectory of Malassezia furfur
inferred← citeshttps://doi.org/10.1128/mra.00094-19openalex-snapshot
Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571
inferred← citeshttps://doi.org/10.1128/mra.00874-18openalex-snapshot
Draft Genome Sequences of the Highly Halotolerant Strain Zygosaccharomyces rouxii ATCC 42981 and the Novel Allodiploid Strain Zygosaccharomyces sapae ATB301 T Obtained Using the MinION Platform
inferred← citeshttps://doi.org/10.1128/msphere.00153-20openalex-snapshot
Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans
inferred← citeshttps://doi.org/10.1145/3665689.3665692openalex-snapshot
HRGF-GapCloser: A gap filling method base on HiFi read and read clustering
inferred← citeshttps://doi.org/10.1146/annurev-animal-020518-115344openalex-snapshot
New Approaches for Genome Assembly and Scaffolding
inferred← citeshttps://doi.org/10.11606/t.17.2020.tde-07092020-102302openalex-snapshot
Ação imunomoduladora de vesículas extracelulares produzidas por Aspergillus flavus
inferred← citeshttps://doi.org/10.1186/s12859-017-1610-3openalex-snapshot
HALC: High throughput algorithm for long read error correction
inferred← citeshttps://doi.org/10.1186/s12859-018-2051-3openalex-snapshot
FMLRC: Hybrid long read error correction using an FM-index
inferred← citeshttps://doi.org/10.1186/s12859-023-05499-3openalex-snapshot
Mabs, a suite of tools for gene-informed genome assembly
inferred← citeshttps://doi.org/10.1186/s12864-017-3927-8openalex-snapshot
Hybrid assembly with long and short reads improves discovery of gene family expansions
inferred← citeshttps://doi.org/10.1186/s12864-018-5164-1openalex-snapshot
Correcting palindromes in long reads after whole-genome amplification
inferred← citeshttps://doi.org/10.1186/s12864-019-6337-2openalex-snapshot
LRScaf: improving draft genomes using long noisy reads
inferred← citeshttps://doi.org/10.1186/s12864-020-06957-5openalex-snapshot
Genomic analysis of demographic history and ecological niche modeling in the endangered Chinese Grouse Tetrastes sewerzowi
inferred← citeshttps://doi.org/10.1186/s12864-020-6455-xopenalex-snapshot
Comparison of multiple algorithms to reliably detect structural variants in pears
inferred← citeshttps://doi.org/10.1186/s12864-021-07616-zopenalex-snapshot
Genome-wide analyses of the relict gull (Larus relictus): insights and evolutionary implications
inferred← citeshttps://doi.org/10.1186/s12864-021-07926-2openalex-snapshot
High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing
inferred← citeshttps://doi.org/10.1186/s12864-021-07937-zopenalex-snapshot
The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments
inferred← citeshttps://doi.org/10.1186/s12864-022-08436-5openalex-snapshot
A near-chromosome level genome assembly of the European hoverfly, Sphaerophoria rueppellii (Diptera: Syrphidae), provides comparative insights into insecticide resistance-related gene family evolution
inferred← citeshttps://doi.org/10.1186/s12864-022-09000-xopenalex-snapshot
De novo genome assembly and genome skims reveal LTRs dominate the genome of a limestone endemic Mountainsnail (Oreohelix idahoensis)
inferred← citeshttps://doi.org/10.1186/s12864-023-09760-0openalex-snapshot
Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat
inferred← citeshttps://doi.org/10.1186/s12864-023-09857-6openalex-snapshot
The draft genome of the Temminck’s tragopan (Tragopan temminckii) with evolutionary implications
inferred← citeshttps://doi.org/10.1186/s12864-024-10979-8openalex-snapshot
Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire
inferred← citeshttps://doi.org/10.1186/s12864-024-11025-3openalex-snapshot
Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora
inferred← citeshttps://doi.org/10.1186/s12870-022-03461-8openalex-snapshot
Full-length transcriptome sequencing reveals the molecular mechanism of potato seedlings responding to low-temperature
inferred← citeshttps://doi.org/10.1186/s12915-017-0473-4openalex-snapshot
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads
inferred← citeshttps://doi.org/10.1186/s12915-022-01412-1openalex-snapshot
Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata
inferred← citeshttps://doi.org/10.1186/s12915-023-01608-zopenalex-snapshot
Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens
inferred← citeshttps://doi.org/10.1186/s13015-021-00186-5openalex-snapshot
LazyB: fast and cheap genome assembly
inferred← citeshttps://doi.org/10.1186/s13059-020-02180-3openalex-snapshot
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
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