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Comprehensive characterisation of molecular host-pathogen interactions in influenza A virus-infected human macrophages

https://doi.org/10.1101/670919
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1 of the 68 references listed on this page is in the Retraction Watch database as retracted (export 2026-11-04): 10.7554/elife.12248 (notice 2018-04-12).

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/82_2014_411openalex-snapshot
The Role of Cytokine Responses During Influenza Virus Pathogenesis and Potential Therapeutic Options
inferredcites →https://doi.org/10.1007/s00705-010-0716-yopenalex-snapshot
Induction of TNF-α in human macrophages by avian and human influenza viruses
inferredcites →https://doi.org/10.1016/0092-8674(81)90449-9openalex-snapshot
A unique cap(m7GpppXm)-dependent influenza virion endonuclease cleaves capped RNAs to generate the primers that initiate viral RNA transcription
inferredcites →https://doi.org/10.1016/j.chom.2007.06.003openalex-snapshot
Identification of Human MVB12 Proteins as ESCRT-I Subunits that Function in HIV Budding
inferredcites →https://doi.org/10.1016/j.chom.2007.06.009openalex-snapshot
The Interferon-Inducible Protein Viperin Inhibits Influenza Virus Release by Perturbing Lipid Rafts
inferredcites →https://doi.org/10.1016/j.molcel.2018.12.020openalex-snapshot
Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance
inferredcites →https://doi.org/10.1016/j.virol.2010.09.006openalex-snapshot
Preferential use of RNA leader sequences during influenza A transcription initiation in vivo
inferredcites →https://doi.org/10.1016/j.virol.2017.06.020openalex-snapshot
Influenza A virus cap-snatches host RNAs based on their abundance early after infection
inferredcites →https://doi.org/10.1017/s1355838298980992openalex-snapshot
PRP16, a DEAH-box RNA helicase, is recruited to the spliceosome primarily via its nonconserved N-terminal domain
inferredcites →https://doi.org/10.1038/nature10921openalex-snapshot
IFITM3 restricts the morbidity and mortality associated with influenza
inferredcites →https://doi.org/10.1038/nature12787openalex-snapshot
An atlas of active enhancers across human cell types and tissues
inferredcites →https://doi.org/10.1038/nature13182openalex-snapshot
A promoter-level mammalian expression atlas
inferredcites →https://doi.org/10.1038/nprot.2012.005openalex-snapshot
5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing
inferredcites →https://doi.org/10.1038/s41586-018-0238-4openalex-snapshot
A naturally occurring antiviral ribonucleotide encoded by the human genome
inferredcites →https://doi.org/10.1038/srep06181openalex-snapshot
Deep sequencing reveals the eight facets of the influenza A/HongKong/1/1968 (H3N2) virus cap-snatching process
inferredcites →https://doi.org/10.1042/bj2110281openalex-snapshot
Structure and function of the influenza virus genome
inferredcites →https://doi.org/10.1046/j.1432-1327.2000.01433.xopenalex-snapshot
Proteome analysis reveals ubiquitin‐conjugating enzymes to be a new family of interferon‐α‐regulated genes
inferredcites →https://doi.org/10.1073/pnas.78.7.4170openalex-snapshot
Sequences of mRNAs derived from genome RNA segment 7 of influenza virus: colinear and interrupted mRNAs code for overlapping proteins.
inferredcites →https://doi.org/10.1073/pnas.86.21.8280openalex-snapshot
Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA.
inferredcites →https://doi.org/10.1074/mcp.m116.057984openalex-snapshot
Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages
inferredcites →https://doi.org/10.1089/jir.2012.0113openalex-snapshot
Overcoming NS1-Mediated Immune Antagonism Involves Both Interferon-Dependent and Independent Mechanisms
inferredcites →https://doi.org/10.1093/bioinformatics/btl483openalex-snapshot
GATHER: a systems approach to interpreting genomic signatures
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/bty222openalex-snapshot
pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks
inferredcites →https://doi.org/10.1093/emboj/cdg109openalex-snapshot
Crucial role of CA cleavage sites in the cap‐snatching mechanism for initiating viral mRNA synthesis
inferredcites →https://doi.org/10.1093/infdis/jix281openalex-snapshot
Proinflammatory Cytokine Responses in Extra-Respiratory Tissues During Severe Influenza
inferredcites →https://doi.org/10.1093/nar/9.17.4423openalex-snapshot
Selected host cell capped RNA fragments prime influenza viral RNA transcription in vivo
inferredcites →https://doi.org/10.1093/nar/gkv333openalex-snapshot
Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation
inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
inferredcites →https://doi.org/10.1099/jgv.0.000922openalex-snapshot
Influenza virus replication in macrophages: balancing protection and pathogenesis
inferredcites →https://doi.org/10.1099/vir.0.80422-0openalex-snapshot
Influenza A mutant viruses with altered NS1 protein function provoke caspase-1 activation in primary human macrophages, resulting in fast apoptosis and release of high levels of interleukins 1β and 18
inferredcites →https://doi.org/10.1101/060012openalex-snapshot
Fast gene set enrichment analysis
inferredcites →https://doi.org/10.1101/gr.101337.109openalex-snapshot
Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells
inferredcites →https://doi.org/10.1111/imr.12211openalex-snapshot
Transcriptomic analysis of mononuclear phagocyte differentiation and activation
inferredcites →https://doi.org/10.1126/science.1246949openalex-snapshot
Innate Immune Activity Conditions the Effect of Regulatory Variants upon Monocyte Gene Expression
inferredcites →https://doi.org/10.1126/science.1246980openalex-snapshot
Common Genetic Variants Modulate Pathogen-Sensing Responses in Human Dendritic Cells
inferredcites →https://doi.org/10.1128/jvi.00014-14openalex-snapshot
An Unbiased Genetic Screen Reveals the Polygenic Nature of the Influenza Virus Anti-Interferon Response
inferredcites →https://doi.org/10.1128/jvi.00615-15openalex-snapshot
Tetherin Sensitivity of Influenza A Viruses Is Strain Specific: Role of Hemagglutinin and Neuraminidase
inferredcites →https://doi.org/10.1128/jvi.01216-10openalex-snapshot
Influenza A Virus Replication Induces Cell Cycle Arrest in G 0 /G 1 Phase
inferredcites →https://doi.org/10.1128/jvi.02323-08openalex-snapshot
The NS1 Protein of a Human Influenza Virus Inhibits Type I Interferon Production and the Induction of Antiviral Responses in Primary Human Dendritic and Respiratory Epithelial Cells
inferredcites →https://doi.org/10.1182/blood-2006-02-002477openalex-snapshot
Gene expression patterns in blood leukocytes discriminate patients with acute infections
inferredcites →https://doi.org/10.1186/1471-2105-14-128openalex-snapshot
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
inferredcites →https://doi.org/10.1189/jlb.0808497openalex-snapshot
Colony-stimulating factor-1 (CSF-1) delivers a proatherogenic signal to human macrophages
inferredcites →https://doi.org/10.1189/jlb.0911479openalex-snapshot
Highly pathogenic avian influenza viruses inhibit effective immune responses of human blood-derived macrophages
inferredcites →https://doi.org/10.1261/rna.054221.115openalex-snapshot
Influenza A virus preferentially snatches noncoding RNA caps
inferredcites →https://doi.org/10.1371/journal.pcbi.0030206openalex-snapshot
Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
inferredcites →https://doi.org/10.1371/journal.pcbi.1005934openalex-snapshot
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease
inferredcites →https://doi.org/10.1371/journal.pgen.1006641openalex-snapshot
Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease
inferredcites →https://doi.org/10.1371/journal.pgen.1006666openalex-snapshot
Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts
inferredcites →https://doi.org/10.1371/journal.pone.0008072openalex-snapshot
Systems-Level Comparison of Host-Responses Elicited by Avian H5N1 and Seasonal H1N1 Influenza Viruses in Primary Human Macrophages
inferredcites →https://doi.org/10.1371/journal.pone.0013927openalex-snapshot
Influenza Virus Non-Structural Protein 1 (NS1) Disrupts Interferon Signaling
inferredcites →https://doi.org/10.1371/journal.pone.0029443openalex-snapshot
Influenza Virus A Infection of Human Monocyte and Macrophage Subpopulations Reveals Increased Susceptibility Associated with Cell Differentiation
inferredcites →https://doi.org/10.1371/journal.pone.0029879openalex-snapshot
Innate Immune Response of Human Alveolar Macrophages during Influenza A Infection
inferredcites →https://doi.org/10.1371/journal.pone.0033180openalex-snapshot
The Role of Host Genetics in Susceptibility to Influenza: A Systematic Review
inferredcites →https://doi.org/10.1371/journal.pone.0035495openalex-snapshot
Perceptions and Experiences of Research Participants on Gender-Based Violence Community Based Survey: Implications for Ethical Guidelines
inferredcites →https://doi.org/10.1371/journal.ppat.1000115openalex-snapshot
H5N1 and 1918 Pandemic Influenza Virus Infection Results in Early and Excessive Infiltration of Macrophages and Neutrophils in the Lungs of Mice
inferredcites →https://doi.org/10.1371/journal.ppat.1002003openalex-snapshot
Evolution of Th2 Immunity: A Rapid Repair Response to Tissue Destructive Pathogens
inferredcites →https://doi.org/10.1371/journal.ppat.1002099openalex-snapshot
Highly Pathogenic Avian Influenza Virus H5N1 Infects Alveolar Macrophages without Virus Production or Excessive TNF-Alpha Induction
inferredcites →https://doi.org/10.2217/fvl.14.65openalex-snapshot
The Role of Macrophages in Influenza a Virus Infection
inferredcites →https://doi.org/10.2353/ajpath.2007.070248openalex-snapshot
Human and Avian Influenza Viruses Target Different Cells in the Lower Respiratory Tract of Humans and Other Mammals
inferredcites →https://doi.org/10.3389/fmicb.2017.01041openalex-snapshot
Secondary Bacterial Infections Associated with Influenza Pandemics
inferredcites →https://doi.org/10.3390/v10110641openalex-snapshot
Insight into Influenza: A Virus Cap-Snatching
inferredcites →https://doi.org/10.4049/jimmunol.0803093openalex-snapshot
Actin and RIG-I/MAVS Signaling Components Translocate to Mitochondria upon Influenza A Virus Infection of Human Primary Macrophages
inferredcites →https://doi.org/10.7554/elife.00247openalex-snapshot
Tissue absence initiates regeneration through Follistatin-mediated inhibition of Activin signaling
inferredcites →https://doi.org/10.7554/elife.00780openalex-snapshot
Minor introns are embedded molecular switches regulated by highly unstable U6atac snRNA
inferredcites →https://doi.org/10.7554/elife.12248openalex-snapshot
RETRACTED: A mathematical model explains saturating axon guidance responses to molecular gradients
inferredcites →https://doi.org/10.7554/elife.18311openalex-snapshot
A systematic view on influenza induced host shutoff
inferredcites →https://doi.org/10.7554/elife.33354openalex-snapshot
IFN-λ prevents influenza virus spread from the upper airways to the lungs and limits virus transmission

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inferred← citeshttps://doi.org/10.1101/795815openalex-snapshot
Upstream translation initiation expands the coding capacity of segmented negative-strand RNA viruses
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