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Upstream translation initiation expands the coding capacity of segmented negative-strand RNA viruses

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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T cell receptor antagonist peptides induce positive selection
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An upstream protein-coding region in enteroviruses modulates virus infection in gut epithelial cells
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The structure of the influenza A virus genome
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Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
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Efficient −2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein
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Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver
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TRIM21 mediates antibody inhibition of adenovirus-based gene delivery and vaccination
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Upstream Open Reading Frames Differentially Regulate Gene-specific Translation in the Integrated Stress Response
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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
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Nonviral heterogeneous sequences are present at the 5′ ends of one species of snowshoe hare bunyavirus S complementary RNA
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Structure of the host-derived sequences present at the 5′ ends of influenza virus mRNA
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
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Translation of the first upstream ORF in the hepatitis B virus pregenomic RNA modulates translation at the core and polymerase initiation codons
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Codon conservation in the influenza A virus genome defines RNA packaging signals
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Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation
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Why genes overlap in viruses
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Non-viral sequences at the 5' ends of Dugbe nairovirus S mRNAs
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Genome packaging in influenza A virus
inferredcites →https://doi.org/10.1099/vir.0.042499-0openalex-snapshot
Non-canonical translation in RNA viruses
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Discovery of UFO Proteins: Human-Virus Chimeric Proteins Generated During Influenza Virus Infection
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inferredcites →https://doi.org/10.1101/gad.1427006openalex-snapshot
Downstream control of upstream open reading frames: Figure 1.
inferredcites →https://doi.org/10.1101/gad.305250.117openalex-snapshot
Non-AUG translation: a new start for protein synthesis in eukaryotes
inferredcites →https://doi.org/10.1101/gr.197566.115openalex-snapshot
nanoCAGE reveals 5′ UTR features that define specific modes of translation of functionally related MTOR-sensitive mRNAs
inferredcites →https://doi.org/10.1101/gr.6305707openalex-snapshot
The evolution of genome compression and genomic novelty in RNA viruses
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Extremely High Mutation Rate of a Hammerhead Viroid
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Replication and Plaque Assay of Influenza Virus in an Established Line of Canine Kidney Cells
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Expression of animal virus genomes
inferredcites →https://doi.org/10.1128/jvi.00185-08openalex-snapshot
Asparagine 631 Variants of the Chicken Mx Protein Do Not Inhibit Influenza Virus Replication in Primary Chicken Embryo Fibroblasts or In Vitro Surrogate Assays
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Investigation of Influenza Virus Polymerase Activity in Pig Cells
inferredcites →https://doi.org/10.1128/jvi.01634-08openalex-snapshot
Mutational Analysis of cis -Acting RNA Signals in Segment 7 of Influenza A Virus
inferredcites →https://doi.org/10.1128/jvi.02068-18openalex-snapshot
M Segment-Based Minigenomes and Virus-Like Particle Assays as an Approach To Assess the Potential of Tick-Borne Phlebovirus Genome Reassortment
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A Virally Encoded Small Peptide Regulates RTA Stability and Facilitates Kaposi's Sarcoma-Associated Herpesvirus Lytic Replication
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Analyses of the mRNA transcription processes of snowshoe hare bunyavirus S and M RNA species
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Translational inhibition by a human cytomegalovirus upstream open reading frame despite inefficient utilization of its AUG codon
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A Single Amino Acid Mutation in the PA Subunit of the Influenza Virus RNA Polymerase Inhibits Endonucleolytic Cleavage of Capped RNAs
inferredcites →https://doi.org/10.1128/mcb.00150-17openalex-snapshot
Efficient and Accurate Translation Initiation Directed by TISU Involves RPS3 and RPS10e Binding and Differential Eukaryotic Initiation Factor 1A Regulation
inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
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The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis
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The Contribution of the PB1-F2 Protein to the Fitness of Influenza A Viruses and its Recent Evolution in the 2009 Influenza A (H1N1) Pandemic Virus
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A Translation Initiation Element Specific to mRNAs with Very Short 5′UTR that Also Regulates Transcription
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Variations in the Hemagglutinin of the 2009 H1N1 Pandemic Virus: Potential for Strains with Altered Virulence Phenotype?
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An Upstream Open Reading Frame Modulates Ebola Virus Polymerase Translation and Virus Replication
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High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling
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Comprehensive profiling of translation initiation in influenza virus infected cells
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Upstream ORFs are prevalent translational repressors in vertebrates
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Small proteins: untapped area of potential biological importance
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Networks of Host Factors that Interact with NS1 Protein of Influenza A Virus
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Oropouche Fever: A Review
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Heartland Virus Epidemiology, Vector Association, and Disease Potential
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The Potential for Reassortment between Oropouche and Schmallenberg Orthobunyaviruses
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Defective Ribosomal Products Are the Major Source of Antigenic Peptides Endogenously Generated from Influenza A Virus Neuraminidase
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Persistent γ-Herpesvirus Infection Induces a CD4 T Cell Response Containing Functionally Distinct Effector Populations
inferredcites →https://doi.org/10.4049/jimmunol.1800586openalex-snapshot
Influenza A Virus Negative Strand RNA Is Translated for CD8+ T Cell Immunosurveillance
inferredcites →https://doi.org/10.4049/jimmunol.1900070openalex-snapshot
Influenza A Virus Infection Induces Viral and Cellular Defective Ribosomal Products Encoded by Alternative Reading Frames
inferredcites →https://doi.org/10.7554/elife.03971openalex-snapshot
Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression
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Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection
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A systematic view on influenza induced host shutoff

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inferred← citeshttps://doi.org/10.1101/cshperspect.a038380openalex-snapshot
Accessory Gene Products of Influenza A Virus
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