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A bHLH interaction code controls bipotential differentiation and self-renewal in the Drosophila gut
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/9780470151808.sc02f02s27openalex-snapshot
RNA Expression Profiling from FACS‐Isolated Cells of the Drosophila Intestine
inferredcites →https://doi.org/10.1002/dvg.20661openalex-snapshot
Characterization of midgut stem cell‐ and enteroblast‐specific Gal4 lines in drosophila
inferredcites →https://doi.org/10.1002/j.1460-2075.1989.tb08527.xopenalex-snapshot
Molecular analysis of the asense gene, a member of the achaete‐scute complex of Drosophila melanogaster, and its novel role in optic lobe development.
inferredcites →https://doi.org/10.1002/j.1460-2075.1991.tb07847.xopenalex-snapshot
Transcriptional activation by heterodimers of the achaete‐scute and daughterless gene products of Drosophila.
inferredcites →https://doi.org/10.1002/wdev.319openalex-snapshot
Making lineage decisions with biological noise: Lessons from the early mouse embryo
inferredcites →https://doi.org/10.1006/jtbi.2002.2544openalex-snapshot
Positive and Negative Feedback: Striking a Balance Between Necessary Antagonists
inferredcites →https://doi.org/10.1006/jtbi.2003.3164openalex-snapshot
The Role of Dimerization in Noise Reduction of Simple Genetic Networks
inferredcites →https://doi.org/10.1007/978-1-60327-153-0openalex-snapshot
Cell Cycle Regulation and Differentiation in Cardiovascular and Neural Systems
inferredcites →https://doi.org/10.1007/978-1-60327-153-0_2openalex-snapshot
The Basic Helix-Loop-Helix Transcription Factors in Neural Differentiation
inferredcites →https://doi.org/10.1007/s11538-006-9114-8openalex-snapshot
Generalized, Switch-Like Competitive Heterodimerization Networks
inferredcites →https://doi.org/10.1016/0092-8674(90)90213-xopenalex-snapshot
The Drosophila extramacrochaetae locus, an antagonist of proneural genes that, like these genes, encodes a helix-loop-helix protein
inferredcites →https://doi.org/10.1016/0092-8674(93)90725-6openalex-snapshot
HLH forced dimers: Tethering MyoD to E47 generates a dominant positive myogenic factor insulated from negative regulation by Id
inferredcites →https://doi.org/10.1016/0092-8674(94)90174-0openalex-snapshot
The basic-helix-loop-helix domain of Drosophila lethal of scute protein is sufficient for proneural function and activates neurogenic genes
inferredcites →https://doi.org/10.1016/0167-4781(94)90001-9openalex-snapshot
Structure and function of helix-loop-helix proteins
inferredcites →https://doi.org/10.1016/0925-4773(94)90096-5openalex-snapshot
Embryonic expression and function of the Drosophila helix-loop-helix gene, extramacrochaetae
inferredcites →https://doi.org/10.1016/j.ceb.2014.07.002openalex-snapshot
Lineage selection and plasticity in the intestinal crypt
inferredcites →https://doi.org/10.1016/j.ceb.2017.06.005openalex-snapshot
Tissue homeostasis and aging: new insight from the fly intestine
inferredcites →https://doi.org/10.1016/j.cell.2009.01.031openalex-snapshot
Transcription Factor Achaete Scute-Like 2 Controls Intestinal Stem Cell Fate
inferredcites →https://doi.org/10.1016/j.cell.2009.05.014openalex-snapshot
Cytokine/Jak/Stat Signaling Mediates Regeneration and Homeostasis in the Drosophila Midgut
inferredcites →https://doi.org/10.1016/j.cell.2011.08.055openalex-snapshot
A Network of Broadly Expressed HLH Genes Regulates Tissue-Specific Cell Fates
inferredcites →https://doi.org/10.1016/j.celrep.2013.04.001openalex-snapshot
Morphological and Molecular Characterization of Adult Midgut Compartmentalization in Drosophila
inferredcites →https://doi.org/10.1016/j.celrep.2014.08.052openalex-snapshot
Enteroendocrine Cells Support Intestinal Stem-Cell-Mediated Homeostasis in Drosophila
inferredcites →https://doi.org/10.1016/j.celrep.2014.09.014openalex-snapshot
The Sestrins Interact with GATOR2 to Negatively Regulate the Amino-Acid-Sensing Pathway Upstream of mTORC1
inferredcites →https://doi.org/10.1016/j.celrep.2015.01.051openalex-snapshot
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila
inferredcites →https://doi.org/10.1016/j.celrep.2015.06.005openalex-snapshot
Identification of Hemagglutinin Residues Responsible for H3N2 Antigenic Drift during the 2014–2015 Influenza Season
inferredcites →https://doi.org/10.1016/j.celrep.2015.06.009openalex-snapshot
Regional Cell-Specific Transcriptome Mapping Reveals Regulatory Complexity in the Adult Drosophila Midgut
inferredcites →https://doi.org/10.1016/j.celrep.2016.03.034openalex-snapshot
Type I bHLH Proteins Daughterless and Tcf4 Restrict Neurite Branching and Synapse Formation by Repressing Neurexin in Postmitotic Neurons
inferredcites →https://doi.org/10.1016/j.celrep.2019.03.071openalex-snapshot
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
inferredcites →https://doi.org/10.1016/j.cub.2017.05.059openalex-snapshot
A bHLH Code for Sexually Dimorphic Form and Function of the C. elegans Somatic Gonad
inferredcites →https://doi.org/10.1016/j.cub.2022.07.003openalex-snapshot
EGFR signaling activates intestinal stem cells by promoting mitochondrial biogenesis and β-oxidation
inferredcites →https://doi.org/10.1016/j.devcel.2015.10.019openalex-snapshot
E Proteins and ID Proteins: Helix-Loop-Helix Partners in Development and Disease
inferredcites →https://doi.org/10.1016/j.devcel.2019.05.032openalex-snapshot
Id1 Stabilizes Epiblast Identity by Sensing Delays in Nodal Activation and Adjusting the Timing of Differentiation
inferredcites →https://doi.org/10.1016/j.devcel.2019.06.005openalex-snapshot
A Tense Situation: Maintaining ER Homeostasis during Lipid Droplet Budding
inferredcites →https://doi.org/10.1016/j.gde.2012.04.002openalex-snapshot
Intestinal stem cell function in Drosophila and mice
inferredcites →https://doi.org/10.1016/j.gde.2013.10.010openalex-snapshot
Genetic screens in mice for genome integrity maintenance and cancer predisposition
inferredcites →https://doi.org/10.1016/j.jtbi.2004.10.027openalex-snapshot
High-dimensional switches and the modelling of cellular differentiation
inferredcites →https://doi.org/10.1016/j.stem.2015.08.002openalex-snapshot
Adult Neural Stem Cells from the Subventricular Zone Give Rise to Reactive Astrocytes in the Cortex after Stroke
inferredcites →https://doi.org/10.1016/j.stem.2015.09.016openalex-snapshot
Frequent Somatic Mutation in Adult Intestinal Stem Cells Drives Neoplasia and Genetic Mosaicism during Aging
inferredcites →https://doi.org/10.1016/j.stem.2016.01.001openalex-snapshot
Replacement of Lost Lgr5-Positive Stem Cells through Plasticity of Their Enterocyte-Lineage Daughters
inferredcites →https://doi.org/10.1016/j.stemcr.2014.09.012openalex-snapshot
ID1 Is a Functional Marker for Intestinal Stem and Progenitor Cells Required for Normal Response to Injury
inferredcites →https://doi.org/10.1016/j.stemcr.2017.11.014openalex-snapshot
A Phyllopod-Mediated Feedback Loop Promotes Intestinal Stem Cell Enteroendocrine Commitment in Drosophila
inferredcites →https://doi.org/10.1016/j.stemcr.2018.12.013openalex-snapshot
Perspectives from the New Editor-in-Chief, Martin Pera
inferredcites →https://doi.org/10.1016/j.stemcr.2019.03.005openalex-snapshot
Division of Labor: Roles of Groucho and CtBP in Notch-Mediated Lateral Inhibition that Controls Intestinal Stem Cell Differentiation in Drosophila
inferredcites →https://doi.org/10.1016/j.tibs.2008.02.002openalex-snapshot
Choose your partners: dimerization in eukaryotic transcription factors
inferredcites →https://doi.org/10.1016/j.ydbio.2008.11.037openalex-snapshot
The HLH protein Extramacrochaetae is required for R7 cell and cone cell fates in the Drosophila eye
inferredcites →https://doi.org/10.1016/j.ydbio.2014.05.019openalex-snapshot
Daughterless homodimer synergizes with Eyeless to induce Atonal expression and retinal neuron differentiation
inferredcites →https://doi.org/10.1016/j.ydbio.2015.12.017openalex-snapshot
GATAe regulates intestinal stem cell maintenance and differentiation in Drosophila adult midgut
inferredcites →https://doi.org/10.1016/j.ydbio.2017.01.004openalex-snapshot
Intestinal stem cell ablation reveals differential requirements for survival in response to chemical challenge
inferredcites →https://doi.org/10.1016/j.ydbio.2017.07.013openalex-snapshot
bHLH proneural genes as cell fate determinants of entero-endocrine cells, an evolutionarily conserved lineage sharing a common root with sensory neurons
inferredcites →https://doi.org/10.1016/j.ydbio.2017.09.002openalex-snapshot
FoxA transcription factor Fork head maintains the intestinal stem/progenitor cell identities in Drosophila
inferredcites →https://doi.org/10.1016/j.ydbio.2019.02.003openalex-snapshot
Transcriptional and post-transcriptional regulation of extra macrochaetae during Drosophila adult peripheral neurogenesis
inferredcites →https://doi.org/10.1016/s0896-6273(00)80701-1openalex-snapshot
Mosaic Analysis with a Repressible Cell Marker for Studies of Gene Function in Neuronal Morphogenesis
inferredcites →https://doi.org/10.1016/s0960-9822(00)00044-0openalex-snapshot
A model Notch response element detects Suppressor of Hairless–dependent molecular switch
inferredcites →https://doi.org/10.1016/s0960-9822(01)00109-9openalex-snapshot
Notch pathway: Making sense of Suppressor of Hairless
inferredcites →https://doi.org/10.1038/35105060openalex-snapshot
The function of E- and id proteins in lymphocyte development
inferredcites →https://doi.org/10.1038/emboj.2012.106openalex-snapshot
Drosophila midgut homeostasis involves neutral competition between symmetrically dividing intestinal stem cells
inferredcites →https://doi.org/10.1038/nature03589openalex-snapshot
Notch signals control the fate of immature progenitor cells in the intestine
inferredcites →https://doi.org/10.1038/nature03659openalex-snapshot
Notch/γ-secretase inhibition turns proliferative cells in intestinal crypts and adenomas into goblet cells
inferredcites →https://doi.org/10.1038/nature04333openalex-snapshot
The adult Drosophila posterior midgut is maintained by pluripotent stem cells
inferredcites →https://doi.org/10.1038/nature04371openalex-snapshot
Evidence that stem cells reside in the adult Drosophila midgut epithelium
inferredcites →https://doi.org/10.1038/nature12962openalex-snapshot
Diversity and dynamics of the Drosophila transcriptome
inferredcites →https://doi.org/10.1038/ncb3214openalex-snapshot
Niche appropriation by Drosophila intestinal stem cell tumours
inferredcites →https://doi.org/10.1038/ncomms10219openalex-snapshot
Accumulation of differentiating intestinal stem cell progenies drives tumorigenesis
inferredcites →https://doi.org/10.1038/ng2049openalex-snapshot
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
inferredcites →https://doi.org/10.1038/ni1260openalex-snapshot
Helix-loop-helix proteins and lymphocyte development
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nmeth.4463openalex-snapshot
SCENIC: single-cell regulatory network inference and clustering
inferredcites →https://doi.org/10.1038/nrg.2016.98openalex-snapshot
Transition states and cell fate decisions in epigenetic landscapes
inferredcites →https://doi.org/10.1038/nrg1840openalex-snapshot
Organizing cell renewal in the intestine: stem cells, signals and combinatorial control
inferredcites →https://doi.org/10.1038/nrn874openalex-snapshot
Proneural genes and the specification of neural cell types
inferredcites →https://doi.org/10.1038/s41467-019-12003-0openalex-snapshot
The WT1-like transcription factor Klumpfuss maintains lineage commitment of enterocyte progenitors in the Drosophila intestine
inferredcites →https://doi.org/10.1038/s41467-020-19532-zopenalex-snapshot
The auxin-inducible degron 2 technology provides sharp degradation control in yeast, mammalian cells, and mice
inferredcites →https://doi.org/10.1038/s41556-017-0020-0openalex-snapshot
Transient Scute activation via a self-stimulatory loop directs enteroendocrine cell pair specification from self-renewing intestinal stem cells
inferredcites →https://doi.org/10.1038/s41598-017-01138-zopenalex-snapshot
Transcription Factor Antagonism Controls Enteroendocrine Cell Specification from Intestinal Stem Cells
inferredcites →https://doi.org/10.1038/sj.onc.1205162openalex-snapshot
Emc, a negative HLH regulator with multiple functions in Drosophila development
inferredcites →https://doi.org/10.1073/pnas.0408031102openalex-snapshot
Gene regulatory networks for development
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.170301897openalex-snapshot
A genomewide survey of basic helix–loop–helix factors in Drosophila
inferredcites →https://doi.org/10.1073/pnas.1719169115openalex-snapshot
Drosophila intestinal stem and progenitor cells are major sources and regulators of homeostatic niche signals
inferredcites →https://doi.org/10.1073/pnas.1916820117openalex-snapshot
A Cell Atlas of the Adult Drosophila Midgut
inferredcites →https://doi.org/10.1073/pnas.91.21.10139openalex-snapshot
Lateral inhibition mediated by the Drosophila neurogenic gene delta is enhanced by proneural proteins.
inferredcites →https://doi.org/10.1073/pnas.94.24.13099openalex-snapshot
A network of interacting transcriptional regulators involved in Drosophila neural fate specification revealed by the yeast two-hybrid system
inferredcites →https://doi.org/10.1074/jbc.273.39.25310openalex-snapshot
Forced Expression of Id-1 in the Adult Mouse Small Intestinal Epithelium Is Associated with Development of Adenomas
inferredcites →https://doi.org/10.1091/mbc.e22-09-0409openalex-snapshot
Evidence that tissue recoil in the early Drosophila embryo is a passive not active process
inferredcites →https://doi.org/10.1093/bioinformatics/btr174openalex-snapshot
BamTools: a C++ API and toolkit for analyzing and managing BAM files
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/biomet/71.1.1openalex-snapshot
On the Existence of Maximum Likelihood Estimates in Logistic Regression Models
inferredcites →https://doi.org/10.1093/nar/gkac963openalex-snapshot
KEGG for taxonomy-based analysis of pathways and genomes
inferredcites →https://doi.org/10.1093/nar/gks543openalex-snapshot
i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1093/nar/gkv395openalex-snapshot
i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly
inferredcites →https://doi.org/10.1101/gad.5.6.996openalex-snapshot
Proneural clusters of achaete-scute expression and the generation of sensory organs in the Drosophila imaginal wing disc.
inferredcites →https://doi.org/10.1126/science.1090289openalex-snapshot
A Protein Interaction Map of Drosophila melanogaster
inferredcites →https://doi.org/10.1126/science.1136606openalex-snapshot
Multipotent Drosophila Intestinal Stem Cells Specify Daughter Cell Fates by Differential Notch Signaling
inferredcites →https://doi.org/10.1126/science.aab0988openalex-snapshot
Bidirectional Notch signaling regulates Drosophila intestinal stem cell multipotency
inferredcites →https://doi.org/10.1126/science.abk2432openalex-snapshot
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
inferredcites →https://doi.org/10.1128/mcb.20.2.429-440.2000openalex-snapshot
Helix-Loop-Helix Proteins: Regulators of Transcription in Eucaryotic Organisms
inferredcites →https://doi.org/10.1186/s12864-018-4772-0openalex-snapshot
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/dev.01113openalex-snapshot
Notch signaling patterns Drosophila mesodermal segments by regulating the bHLH transcription factor twist
inferredcites →https://doi.org/10.1242/dev.01442openalex-snapshot
A role forextra macrochaetaedownstream of Notch in follicle cell differentiation
inferredcites →https://doi.org/10.1242/dev.039404openalex-snapshot
Transcriptional control of stem cell maintenance in the Drosophila intestine
inferredcites →https://doi.org/10.1242/dev.065292openalex-snapshot
Distinct levels of Notch activity for commitment and terminal differentiation of stem cells in the adult fly intestine
inferredcites →https://doi.org/10.1242/dev.111054openalex-snapshot
Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library
inferredcites →https://doi.org/10.1242/dev.113.1.245openalex-snapshot
The Drosophila extramacrochaetae protein antagonizes sequence-specific DNA binding by daughterless/achaete-scute protein complexes
inferredcites →https://doi.org/10.1242/dev.113357openalex-snapshot
Enteroendocrine cells are generated from stem cells through a distinct progenitor in the adult Drosophila posterior midgut
inferredcites →https://doi.org/10.1242/dev.120.12.3595openalex-snapshot
Regulation of scute function by extramacrochaete in vitro and in vivo
inferredcites →https://doi.org/10.1242/dev.121855openalex-snapshot
Inhibition of Daughterless by Extramacrochaetae mediates Notch-induced cell proliferation
inferredcites →https://doi.org/10.1242/dev.123208openalex-snapshot
Ttk69 acts as a master repressor of enteroendocrine cell specification inDrosophilaintestinal stem cell lineages
inferredcites →https://doi.org/10.1242/dev.127.11.2383openalex-snapshot
Relationships between extramacrochaetae and Notch signalling in Drosophila wing development
inferredcites →https://doi.org/10.1242/dev.128.20.3889openalex-snapshot
Notch signalling and the initiation of neural development in theDrosophilaeye
inferredcites →https://doi.org/10.1371/journal.pgen.1004233openalex-snapshot
The bHLH Factors Extramacrochaetae and Daughterless Control Cell Cycle in Drosophila Imaginal Discs through the Transcriptional Regulation of the cdc25 Phosphatase string
inferredcites →https://doi.org/10.1371/journal.pgen.1004911openalex-snapshot
A Re-examination of the Selection of the Sensory Organ Precursor of the Bristle Sensilla of Drosophila melanogaster
inferredcites →https://doi.org/10.15252/embj.201489050openalex-snapshot
Regulation of Drosophila intestinal stem cell maintenance and differentiation by the transcription factor Escargot
inferredcites →https://doi.org/10.15252/embj.201489072openalex-snapshot
Escargot maintains stemness and suppresses differentiation in Drosophila intestinal stem cells
inferredcites →https://doi.org/10.15252/embj.201490881openalex-snapshot
Snai1 regulates cell lineage allocation and stem cell maintenance in the mouse intestinal epithelium
inferredcites →https://doi.org/10.15252/embj.201591517openalex-snapshot
Robust intestinal homeostasis relies on cellular plasticity in enteroblasts mediated by miR‐8–Escargot switch
inferredcites →https://doi.org/10.1534/g3.115.019117openalex-snapshot
The Drosophila Prosecretory Transcription Factor dimmed Is Dynamically Regulated in Adult Enteroendocrine Cells and Protects Against Gram-Negative Infection
inferredcites →https://doi.org/10.1534/genetics.111.136291openalex-snapshot
A Novel Approach for Directing Transgene Expression in Drosophila: T2A-Gal4 In-Frame Fusion
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.4161/cbt.50openalex-snapshot
Id Proteins - Tumor Markers or Oncogenes?
inferredcites →https://doi.org/10.7150/jgen.12863openalex-snapshot
GLAD: an Online Database of G ene L ist A nnotation for D rosophila
inferredcites →https://doi.org/10.7554/elife.00886openalex-snapshot
Physiological and stem cell compartmentalization within the Drosophila midgut
inferredcites →https://doi.org/10.7554/elife.32341openalex-snapshot
CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo
inferredcites →https://doi.org/10.7554/elife.33967openalex-snapshot
Regulation of the Drosophila ID protein Extra macrochaetae by proneural dimerization partners
inferredcites →https://doi.org/10.7554/elife.38853openalex-snapshot
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1101/2023.10.30.564854openalex-snapshot
Principles of Computation by Competitive Protein Dimerization Networks
inferred← citeshttps://doi.org/10.1101/2024.08.05.606739openalex-snapshot
The transcription factor Chronophage/BCL11A/B promotes intestinal stem cell proliferation and endocrine differentiation
inferred← citeshttps://doi.org/10.7554/elife.92979openalex-snapshot
Surprising features of nuclear receptor interaction networks revealed by live-cell single-molecule imaging
inferred← citeshttps://doi.org/10.7554/elife.92979.1openalex-snapshot
Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging
inferred← citeshttps://doi.org/10.7554/elife.92979.2openalex-snapshot
Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging
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Surprising features of nuclear receptor interaction networks revealed by live-cell single-molecule imaging
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