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Selection against expression noise explains the origin of the hourglass pattern of Evo-Devo
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.cell.2008.09.050openalex-snapshot
Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
inferredcites →https://doi.org/10.1016/j.cell.2014.06.027openalex-snapshot
H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
inferredcites →https://doi.org/10.1016/j.celrep.2018.12.052openalex-snapshot
Systems Properties and Spatiotemporal Regulation of Cell Position Variability during Embryogenesis
inferredcites →https://doi.org/10.1016/j.cels.2017.10.003openalex-snapshot
Systematic Analysis of the Determinants of Gene Expression Noise in Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.devcel.2012.04.004openalex-snapshot
Developmental Milestones Punctuate Gene Expression in the Caenorhabditis Embryo
inferredcites →https://doi.org/10.1016/j.molcel.2012.05.008openalex-snapshot
Expression Noise and Acetylation Profiles Distinguish HDAC Functions
inferredcites →https://doi.org/10.1016/j.semcdb.2018.02.019openalex-snapshot
Activating embryonic development in Drosophila
inferredcites →https://doi.org/10.1016/j.stem.2015.09.011openalex-snapshot
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
inferredcites →https://doi.org/10.1016/s0169-5347(02)02596-xopenalex-snapshot
A single mode of canalization
inferredcites →https://doi.org/10.1038/150563a0openalex-snapshot
CANALIZATION OF DEVELOPMENT AND THE INHERITANCE OF ACQUIRED CHARACTERS
inferredcites →https://doi.org/10.1038/1831654a0openalex-snapshot
Canalization of Development and Genetic Assimilation of Acquired Characters
inferredcites →https://doi.org/10.1038/msb.2008.11openalex-snapshot
Selection to minimise noise in living systems and its implications for the evolution of gene expression
inferredcites →https://doi.org/10.1038/nature04785openalex-snapshot
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
inferredcites →https://doi.org/10.1038/nature08781openalex-snapshot
Variability in gene expression underlies incomplete penetrance
inferredcites →https://doi.org/10.1038/nature09632openalex-snapshot
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
inferredcites →https://doi.org/10.1038/nature09634openalex-snapshot
Gene expression divergence recapitulates the developmental hourglass model
inferredcites →https://doi.org/10.1038/nature09990openalex-snapshot
A cis-regulatory map of the Drosophila genome
inferredcites →https://doi.org/10.1038/nature16994openalex-snapshot
The mid-developmental transition and the evolution of animal body plans
inferredcites →https://doi.org/10.1038/ncomms1248openalex-snapshot
Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
inferredcites →https://doi.org/10.1038/ng.3791openalex-snapshot
Promoter shape varies across populations and affects promoter evolution and expression noise
inferredcites →https://doi.org/10.1038/nrg1615openalex-snapshot
Stochasticity in gene expression: from theories to phenotypes
inferredcites →https://doi.org/10.1038/s41559-017-0113openalex-snapshot
Developmental constraints shape the evolution of the nematode mid-developmental transition
inferredcites →https://doi.org/10.1038/s41559-017-0318-0openalex-snapshot
Constrained vertebrate evolution by pleiotropic genes
inferredcites →https://doi.org/10.1038/s41576-019-0130-6openalex-snapshot
Challenges in measuring and understanding biological noise
inferredcites →https://doi.org/10.1038/s41576-019-0142-2openalex-snapshot
Author Correction: Challenges in measuring and understanding biological noise
inferredcites →https://doi.org/10.1038/srep39921openalex-snapshot
Batch effects and the effective design of single-cell gene expression studies
inferredcites →https://doi.org/10.1073/pnas.1722330115openalex-snapshot
Modulation of transcriptional burst frequency by histone acetylation
inferredcites →https://doi.org/10.1093/bioinformatics/btl140openalex-snapshot
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
inferredcites →https://doi.org/10.1093/bioinformatics/btn615openalex-snapshot
AmiGO: online access to ontology and annotation data
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/biostatistics/kxj037openalex-snapshot
Adjusting batch effects in microarray expression data using empirical Bayes methods
inferredcites →https://doi.org/10.1093/gbe/evy177openalex-snapshot
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species
inferredcites →https://doi.org/10.1093/molbev/msy175openalex-snapshot
Adaptive Evolution of Animal Proteins over Development: Support for the Darwin Selection Opportunity Hypothesis of Evo-Devo
inferredcites →https://doi.org/10.1093/nar/gku1111openalex-snapshot
The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools
inferredcites →https://doi.org/10.1093/nar/gkw1013openalex-snapshot
OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines
inferredcites →https://doi.org/10.1101/gr.171546.113openalex-snapshot
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
inferredcites →https://doi.org/10.1101/gr.3715005openalex-snapshot
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
inferredcites →https://doi.org/10.1111/j.1558-5646.1997.tb02420.xopenalex-snapshot
A POPULATION GENETIC THEORY OF CANALIZATION
inferredcites →https://doi.org/10.1126/science.1070919openalex-snapshot
Stochastic Gene Expression in a Single Cell
inferredcites →https://doi.org/10.1126/science.1105891openalex-snapshot
Noise in Gene Expression: Origins, Consequences, and Control
inferredcites →https://doi.org/10.1186/gb-2014-15-2-r29openalex-snapshot
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
inferredcites →https://doi.org/10.1186/s13059-019-1671-xopenalex-snapshot
BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
inferredcites →https://doi.org/10.1242/dev.033183openalex-snapshot
The maternal-to-zygotic transition: a play in two acts
inferredcites →https://doi.org/10.1242/dev.059923openalex-snapshot
What's all the noise about developmental stochasticity?
inferredcites →https://doi.org/10.1242/dev.1994.supplement.135openalex-snapshot
Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
inferredcites →https://doi.org/10.12688/f1000research.9501.1openalex-snapshot
A step-by-step workflow for low-level analysis of single-cell RNA-seq data
inferredcites →https://doi.org/10.12688/f1000research.9501.2openalex-snapshot
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
inferredcites →https://doi.org/10.1371/journal.pcbi.1005585openalex-snapshot
Independent regulation of gene expression level and noise by histone modifications
inferredcites →https://doi.org/10.1371/journal.pgen.1005592openalex-snapshot
Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos
inferredcites →https://doi.org/10.1371/journal.pone.0009035openalex-snapshot
Genes Confer Similar Robustness to Environmental, Stochastic, and Genetic Perturbations in Yeast
inferredcites →https://doi.org/10.1371/journal.pone.0066826openalex-snapshot
A Comparative Analysis of Transcription Factor Expression during Metazoan Embryonic Development
inferredcites →https://doi.org/10.1534/genetics.117.300467openalex-snapshot
The Evolution of Gene-Specific Transcriptional Noise Is Driven by Selection at the Pathway Level
inferredcites →https://doi.org/10.5860/choice.34-1536openalex-snapshot
The shape of life: genes, development, and the evolution of animal form
inferredcites →https://doi.org/10.7208/chicago/9780226256573.001.0001openalex-snapshot
The Shape of Life
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/evo.14181openalex-snapshot
Comparative studies on speciation: 30 years since Coyne and Orr
inferred← citeshttps://doi.org/10.15252/msb.20209539openalex-snapshot
Predictive features of gene expression variation reveal mechanistic link with differential expression
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