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Differential gene expression and gene variants drive color and pattern development in divergent color morphs of a mimetic poison frog

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Outgoing claims: the papers this work cites, builds on, or argues with.

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North American velvet ants form one of the world’s largest known Müllerian mimicry complexes
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Tyrosinase-related protein 1 (TYRP1) gene polymorphism and skin differential expression related to coat color in Mongolian horse
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Drosophila heparan sulfate 6-O endosulfatase regulates Wingless morphogen gradient formation
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Wnt signaling underlies evolution and development of the butterfly wing pattern symmetry systems
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Independent pseudogenization of CYP2J19 in penguins, owls and kiwis implicates gene in red carotenoid synthesis
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Diversity in mimicry: paradox or paradigm?
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Molecular systematics and phylogeography of Amazonian poison frogs of the genus Dendrobates
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The Pteridine Pathway in Zebrafish: Regulation and Specification during the Determination of Neural Crest Cell‐Fate
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Localization of Sepiapterin Reductase in Pigment Cells of Oryzias latipes
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Animal Coloration: an Account of the Principal Facts and Theories relating to the Colours and Markings of Animals
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Near-optimal probabilistic RNA-seq quantification
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Ancient homology underlies adaptive mimetic diversity across butterflies
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A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly
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De novo assembly and analysis of RNA-seq data
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Fast and sensitive protein alignment using DIAMOND
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Differential analysis of RNA-seq incorporating quantification uncertainty
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Fast and accurate long-read assembly with wtdbg2
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Comparative Transcriptome Analysis of Mink (Neovison vison) Skin Reveals the Key Genes Involved in the Melanogenesis of Black and White Coat Colour
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Genetics, development and evolution of adaptive pigmentation in vertebrates
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A Mouse Keratin 1 Mutation Causes Dark Skin and Epidermolytic Hyperkeratosis
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Keratin Expression Provides Novel Insight into the Morphogenesis and Function of the Companion Layer in Hair Follicles
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Experimental evidence that predation promotes divergence in adaptive radiation
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A Müllerian mimicry ring in Appalachian millipedes
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Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand
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Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard
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Induction of Melanocyte-specific Microphthalmia-associated Transcription Factor by Wnt-3a
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QSulf1 remodels the 6-O sulfation states of cell surface heparan sulfate proteoglycans to promote Wnt signaling
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Studies Upon the Biological Significance of Animal Coloration. II. A Revised Working Hypothesis of Mimicry
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Structural and Chemical Aspects of Animal Coloration
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Mechanisms for Color Convergence in a Mimetic Radiation of Poison Frogs
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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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Pax7 is required for establishment of the xanthophore lineage in zebrafish embryos
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Differential predation drives the geographical divergence in multiple traits in aposematic frogs
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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STAR: ultrafast universal RNA-seq aligner
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HTSeq—a Python framework to work with high-throughput sequencing data
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot
Minimap2: pairwise alignment for nucleotide sequences
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The rosy locus in Drosophila melanogaster: xanthine dehydrogenase and eye pigments.
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LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
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Revealing the Biochemical and Genetic Basis of Color Variation in a Polymorphic Lizard
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Genomic takeover by transposable elements in the Strawberry poison frog
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Database resources of the National Center for Biotechnology Information: update
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PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
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Molecular phylogenetic evidence for a mimetic radiation in Peruvian poison frogs supports a Müllerian mimicry hypothesis
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Trade-off between warning signal efficacy and mating success in the wood tiger moth
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To quiver or to shiver: increased melanization benefits thermoregulation, but reduces warning signal efficacy in the wood tiger moth
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Number of genes controlling a quantitative trait in a hybrid zone of the aposematic frogRanitomeya imitator
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Red carotenoids and associated gene expression explain colour variation in frillneck lizards
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Shannon: An Information-Optimal de Novo RNA-Seq Assembler
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Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies
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Direct determination of diploid genome sequences
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Resolving the full spectrum of human genome variation using Linked-Reads
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Diversity in warning coloration: selective paradox or the norm?
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Diversification and convergence of aposematic phenotypes: truncated receptors and cellular arrangements mediate rapid evolution of coloration in harlequin poison frogs
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Carotenoid accumulation strategies for becoming a colourful House Finch: analyses of plasma and liver pigments in wild moulting birds
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Divergence in parental care, habitat selection and larval life history between two species of Peruvian poison frogs: an experimental analysis
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STRONG NATURAL SELECTION IN A WARNING-COLOR HYBRID ZONE
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Pheomelanin in the skin of Hymenochirus boettgeri (Amphibia: Anura: Pipidae)
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
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Sex chromosome inversions enforce reproductive isolation across an avian hybrid zone
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Functional colour genes and signals of selection in colour‐polymorphic salamanders
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Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish
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Community Assembly Through Adaptive Radiation in Hawaiian Spiders
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optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry
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Pteridines as Pigments in Amphibians
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A taxonomic revision of the Neotropical poison frog genus Ranitomeya (Amphibia: Dendrobatidae)
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GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
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WGCNA: an R package for weighted correlation network analysis
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Alkaloid defenses of co-mimics in a putative Müllerian mimetic radiation
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Differential impact of simultaneous migration on coevolving hosts and parasites.
inferredcites →https://doi.org/10.1186/1471-2148-7-74openalex-snapshot
Evolution of pigment synthesis pathways by gene and genome duplication in fish
inferredcites →https://doi.org/10.1186/1471-2164-14-862openalex-snapshot
De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special reference to pigment genes
inferredcites →https://doi.org/10.1186/1741-7007-11-105openalex-snapshot
Precise colocalization of interacting structural and pigmentary elements generates extensive color pattern variation in Phelsumalizards
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ANGSD: Analysis of Next Generation Sequencing Data
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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
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Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus
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Comparative transcriptomics reveals candidate carotenoid color genes in an East African cichlid fish
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Being red, blue and green: the genetic basis of coloration differences in the strawberry poison frog (Oophaga pumilio)
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Repbase Update, a database of repetitive elements in eukaryotic genomes
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Neural crest development is regulated by the transcription factor Sox9
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Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning
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nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate
inferredcites →https://doi.org/10.1242/dev.127.14.3031openalex-snapshot
An orthologue of the kit -related gene fms is required for development of neural crest-derived xanthophores and a subpopulation of adult melanocytes in the zebrafish, Danio rerio
inferredcites →https://doi.org/10.1371/journal.pone.0055443openalex-snapshot
Phenotypic and Genetic Divergence among Poison Frog Populations in a Mimetic Radiation
inferredcites →https://doi.org/10.1371/journal.pone.0067801openalex-snapshot
Gene Expression Analysis of Zebrafish Melanocytes, Iridophores, and Retinal Pigmented Epithelium Reveals Indicators of Biological Function and Developmental Origin
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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
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Parallel Genetic Architecture of Parallel Adaptive Radiations in Mimetic Heliconius Butterflies
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The Functional Basis of Wing Patterning in Heliconius Butterflies: The Molecules Behind Mimicry
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Mechanisms regulating melanogenesis*
inferredcites →https://doi.org/10.1670/13-027openalex-snapshot
A Test of Aposematism in the Dendrobatid Poison FrogOophaga pumilio: The Importance of Movement in Clay Model Experiments
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RAIN FOREST CANOPY COVER, RESOURCE AVAILABILITY, AND LIFE HISTORY EVOLUTION IN GUPPIES
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RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences
inferredcites →https://doi.org/10.2307/1443772openalex-snapshot
An Experimental Study of Aposematic Coloration in the Salamander Plethodon jordani
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Adaptive Radiation in Sticklebacks: Trade‐Offs in Feeding Performance and Growth
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The WNT/Beta-catenin pathway in melanoma
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On the optimal trimming of high-throughput mRNA sequence data
inferredcites →https://doi.org/10.3390/ijms17071144openalex-snapshot
Signaling Pathways in Melanogenesis
inferredcites →https://doi.org/10.56021/9780801847806openalex-snapshot
Biology of Amphibians
inferredcites →https://doi.org/10.5713/ajas.2013.13162openalex-snapshot
Association of Tyrosinase (TYR) and Tyrosinase-related Protein 1 (TYRP1) with Melanic Plumage Color in Korean Quails (Coturnix coturnix)
inferredcites →https://doi.org/10.5735/086.048.0103openalex-snapshot
Contrasting Colors of an Aposematic Poison Frog Do Not Affect Predation
inferredcites →https://doi.org/10.5962/bhl.title.1793openalex-snapshot
Animal coloration; an account of the principal facts and theories relating to the colours and markings of animals
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The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/1365-2656.14157openalex-snapshot
Alternative splicing in parallel evolution and the evolutionary potential in sticklebacks
inferred← citeshttps://doi.org/10.1111/mec.70065openalex-snapshot
Bdh1l Gene Expression Is a Potential Molecular Factor in the Evolution of Carotenoid‐Based Colour Diversity of Cichlid Fishes
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