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Changes in gene expression during female reproductive development in a colour polymorphic insect

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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An integrative approach to heterochrony: the distinction between interspecific and intraspecific phenomena

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Evolution in mendelian populations

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Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B

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Mechanisms of age-specific regulation of dopamine metabolism by juvenile hormone and 20-hydroxyecdysone in Drosophila females

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Pan-metazoan phylogeny of the DMRT gene family: a framework for functional studies

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Male mate choice based on ontogenetic colour changes of females in the damselfly Ischnura senegalensis

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Female polymorphisms, sexual conflict and limits to speciation processes in animals

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mab-3, a gene required for sex-specific yolk protein expression and a male-specific lineage in C. elegans

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In vitro transcription termination activity of the Drosophila mitochondrial DNA-binding protein DmTTF

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Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

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The roles of Dmrt (Double sex/Male-abnormal-3 Related Transcription factor) genes in sex determination and differentiation mechanisms: Ubiquity and diversity across the animal kingdom

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Supergenes and Complex Phenotypes

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The pdm3 Locus Is a Hotspot for Recurrent Evolution of Female-Limited Color Dimorphism in Drosophila

inferredcites →https://doi.org/10.1016/j.ibmb.2003.06.012openalex-snapshot

The ecdysone regulatory cascade and ovarian development in lepidopteran insects: insights from the silkmoth paradigm

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Bunched specifically regulates α/β mushroom body neuronal cell proliferation during metamorphosis

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The Drosophila Hindgut Lacks Constitutively Active Adult Stem Cells but Proliferates in Response to Tissue Damage

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The Steroid Hormone Ecdysone Functions with Intrinsic Chromatin Remodeling Factors to Control Female Germline Stem Cells in Drosophila

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Dmrt genes in the development and evolution of sexual dimorphism

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Spook and Spookier code for stage-specific components of the ecdysone biosynthetic pathway in Diptera

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Sex-specific expression of a HOX gene associated with rapid morphological evolution

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The Drosophila putative histone acetyltransferase Enok maintains female germline stem cells through regulating Bruno and the niche

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Female dimorphism and mating behaviour in a damselfly, Ischnura ramburi: females mimicking males

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vrille, Pdp1, and dClock Form a Second Feedback Loop in the Drosophila Circadian Clock

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enok encodes a Drosophila putative histone acetyltransferase required for mushroom body neuroblast proliferation

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SAP30, a Component of the mSin3 Corepressor Complex Involved in N-CoR-Mediated Repression by Specific Transcription Factors

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A general model for the evolution of recombination

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The inheritance of female polymorphism in the damselfly Ischnura graellsii (Rambur) (Odonata: Coenagrionidae)

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Control of segment number in vertebrate embryos

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The developmental transcriptome of Drosophila melanogaster

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DMRT1 prevents female reprogramming in the postnatal mammalian testis

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doublesex is a mimicry supergene

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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Poly(ADP-ribose) controls DE-cadherin-dependent stem cell maintenance and oocyte localization

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inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot

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Candidate genes associated with color morphs of female-limited polymorphisms of the damselfly Ischnura senegalensis

inferredcites →https://doi.org/10.1038/s41467-019-09078-0openalex-snapshot

SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells

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A transposable element insertion is associated with an alternative life history strategy

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Common cuckoo females may escape male sexual harassment by color polymorphism

inferredcites →https://doi.org/10.1038/sj.hdy.6800148openalex-snapshot

Correlational selection and the evolution of genomic architecture

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The effects of mass and age on standard metabolic rate in house crickets

inferredcites →https://doi.org/10.1046/j.1525-142x.2003.03063.xopenalex-snapshot

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inferredcites →https://doi.org/10.1073/pnas.0701035104openalex-snapshot

The theory of facilitated variation

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Modularity and interactions in the genetics of gene expression

inferredcites →https://doi.org/10.1073/pnas.0810388105openalex-snapshot

Genetic architecture of complex traits: Large phenotypic effects and pervasive epistasis

inferredcites →https://doi.org/10.1073/pnas.1105937108openalex-snapshot

Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences

inferredcites →https://doi.org/10.1073/pnas.1213423109openalex-snapshot

Epistasis dominates the genetic architecture of Drosophila quantitative traits

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Sympatric speciation by sexual conflict

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Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

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Density-dependent competition and selection on immune function in genetic lizard morphs

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Shade is the Drosophila P450 enzyme that mediates the hydroxylation of ecdysone to the steroid insect molting hormone 20-hydroxyecdysone

inferredcites →https://doi.org/10.1074/jbc.m507990200openalex-snapshot

Dimerization of Doublesex Is Mediated by a Cryptic Ubiquitin-associated Domain Fold

inferredcites →https://doi.org/10.1086/412671openalex-snapshot

Juvenile Hormone and the Physiological Basis of Insect Polymorphisms

inferredcites →https://doi.org/10.1086/429278openalex-snapshot

Female Polymorphism, Frequency Dependence, and Rapid Evolutionary Dynamics in Natural Populations

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The Evolutionary Origin And Elaboration Of Sociality In The Aculeate Hymenoptera: Maternal Effects, Sib‐social Effects, And Heterochrony

inferredcites →https://doi.org/10.1086/522844openalex-snapshot

Female‐Limited Polymorphism in the Copulatory Organ of a Traumatically Inseminating Insect

inferredcites →https://doi.org/10.1086/598491openalex-snapshot

Density‐Dependent Male Mating Harassment, Female Resistance, and Male Mimicry

inferredcites →https://doi.org/10.1086/680982openalex-snapshot

Evolutionary Time-Series Analysis Reveals the Signature of Frequency-Dependent Selection on a Female Mating Polymorphism

inferredcites →https://doi.org/10.1086/698198openalex-snapshot

The Genomics of Sexual Conflict

inferredcites →https://doi.org/10.1086/705294openalex-snapshot

Macroevolutionary Origin and Adaptive Function of a Polymorphic Female Signal Involved in Sexual Conflict

inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu739openalex-snapshot

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

inferredcites →https://doi.org/10.1093/biolinnean/blz006openalex-snapshot

Re-examining escape behaviour and habitat use as correlates of dorsal pattern variation in female brown anole lizards,Anolis sagrei(Squamata: Dactyloidae)

inferredcites →https://doi.org/10.1093/gbe/evx006openalex-snapshot

Genomic features of the damselfly Calopteryx splendens representing a sister clade to most insect orders

inferredcites →https://doi.org/10.1093/genetics/16.2.97openalex-snapshot

EVOLUTION IN MENDELIAN POPULATIONS

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THE MUTATIONAL LOAD WITH EPISTATIC GENE INTERACTIONS IN FITNESS

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Physiological Epistasis, Ontogenetic Conflict and Natural Selection on Physiology and Life History

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Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

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limma powers differential expression analyses for RNA-sequencing and microarray studies

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UniProt: a worldwide hub of protein knowledge

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Developmental Plasticity and Evolution

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THE GENETICAL THEORY OF NATURAL SELECTION

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Relaxed Phylogenetics and the Palaeoptera Problem: Resolving Deep Ancestral Splits in the Insect Phylogeny

inferredcites →https://doi.org/10.1098/rsbl.2016.0839openalex-snapshot

Genetic colour polymorphism is associated with avian malarial infections

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inferredcites →https://doi.org/10.1098/rsif.2018.0785openalex-snapshot

Pterin-pigmented nanospheres create the colours of the polymorphic damselfly Ischnura elegans

inferredcites →https://doi.org/10.1098/rspb.2014.0465openalex-snapshot

Comparative genomics of the mimicry switch inPapilio dardanus

inferredcites →https://doi.org/10.1098/rspb.2016.2407openalex-snapshot

Intra- and intersexual differences in parasite resistance and female fitness tolerance in a polymorphic insect

inferredcites →https://doi.org/10.1098/rspb.2016.2838openalex-snapshot

The melanocortin system regulates body pigmentation and social behaviour in a colour polymorphic cichlid fish

inferredcites →https://doi.org/10.1098/rspb.2018.1788openalex-snapshot

A non-coding region near Follistatin controls head colour polymorphism in the Gouldian finch

inferredcites →https://doi.org/10.1098/rspb.2019.0251openalex-snapshot

Sexual conflict and intrasexual polymorphism promote assortative mating and halt population differentiation

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Sexual antagonism drives the displacement of polymorphism across gene regulatory cascades

inferredcites →https://doi.org/10.1101/gad.14.14.1750openalex-snapshot

Sexual dimorphism in diverse metazoans is regulated by a novel class of intertwined zinc fingers

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Pre-mRNA splicing in the absence of an SR protein RS domain

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The evolutionary origination of a novel expression pattern through an extreme heterochronic shift

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Temperature drives pre‐reproductive selection and shapes the biogeography of a female polymorphism

inferredcites →https://doi.org/10.1111/evo.13221openalex-snapshot

Male‐mimicking females increase male‐male interactions, and decrease male survival and condition in a female‐polymorphic damselfly

inferredcites →https://doi.org/10.1111/evo.13302openalex-snapshot

Body size evolution in an old insect order: No evidence for Cope's Rule in spite of fitness benefits of large size

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SOCIAL CAUSES OF CORRELATIONAL SELECTION AND THE RESOLUTION OF A HERITABLE THROAT COLOR POLYMORPHISM IN A LIZARD

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Hybridization and the inheritance of female colour polymorphism in two ischnurid damselflies (Odonata: Coenagrionidae)

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Neuroendocrinological and Molecular Aspects of Insect Reproduction

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Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

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Colour polymorphism and correlated characters: genetic mechanisms and evolution

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Evolutionary dynamics and population biology of a polymorphic insect

inferredcites →https://doi.org/10.1111/j.1420-9101.2005.01019.xopenalex-snapshot

Phenotypic and genetic variation in emergence and development time of a trimorphic damselfly

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Mi‐2 chromatin remodeling factor functions in sensory organ development through proneural gene repression in Drosophila

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Regularization and Variable Selection Via the Elastic Net

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D rosophila sex combs as a model of evolutionary innovations

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THE EVOLUTION OF CANALIZATION AND THE BREAKING OF VON BAER'S LAWS: MODELING THE EVOLUTION OF DEVELOPMENT WITH EPISTASIS

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NEGATIVE FREQUENCY-DEPENDENT SELECTION IN FEMALE COLOR POLYMORPHISM OF A DAMSELFLY

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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1111/jeb.13037openalex-snapshot

Do group dynamics affect colour morph clines during a range shift?

inferredcites →https://doi.org/10.1111/mec.14025openalex-snapshot

Back to basics: using colour polymorphisms to study evolutionary processes

inferredcites →https://doi.org/10.1111/mec.14280openalex-snapshot

Long‐term balancing selection on chromosomal variants associated with crypsis in a stick insect

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Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution

inferredcites →https://doi.org/10.1111/mec.14789openalex-snapshot

Sex‐biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

inferredcites →https://doi.org/10.1111/mec.14907openalex-snapshot

Sexual dimorphism and heightened conditional expression in a sexually selected weapon in the Asian rhinoceros beetle

inferredcites →https://doi.org/10.1126/science.273.5271.59openalex-snapshot

Oxidative Stress, Caloric Restriction, and Aging

inferredcites →https://doi.org/10.1128/mcb.13.9.5323openalex-snapshot

A unique ribonucleoprotein complex assembles preferentially on ecdysone-responsive sites in Drosophila melanogaster.

inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot

BLAST+: architecture and applications

inferredcites →https://doi.org/10.1186/1471-2148-10-4openalex-snapshot

Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes

inferredcites →https://doi.org/10.1186/1471-2148-9-159openalex-snapshot

The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation

inferredcites →https://doi.org/10.1186/1471-2164-11-310openalex-snapshot

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

inferredcites →https://doi.org/10.1186/1471-2164-11-400openalex-snapshot

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

inferredcites →https://doi.org/10.1186/1471-2164-14-465openalex-snapshot

Assessing De Novo transcriptome assembly metrics for consistency and utility

inferredcites →https://doi.org/10.1186/2041-9139-5-8openalex-snapshot

Revisiting de Beer’s textbook example of heterochrony and jaw elongation in fish: calmodulin expression reflects heterochronic growth, and underlies morphological innovation in the jaws of belonoid fishes

inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot

A scaling normalization method for differential expression analysis of RNA-seq data

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voom: precision weights unlock linear model analysis tools for RNA-seq read counts

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Corset: enabling differential gene expression analysis for de novoassembled transcriptomes

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Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression

inferredcites →https://doi.org/10.1242/dev.065227openalex-snapshot

Direct targets of theD. melanogasterDSXF protein and the evolution of sexual development

inferredcites →https://doi.org/10.1242/dev.089896openalex-snapshot

The Maf factor Traffic jam both enables and inhibits collective cell migration inDrosophilaoogenesis

inferredcites →https://doi.org/10.1242/dev.120.12.3537openalex-snapshot

The Notch signalling pathway is required for Enhancer of split bHLH protein expression during neurogenesis in the Drosophila embryo

inferredcites →https://doi.org/10.1242/dev.127.4.745openalex-snapshot

Drosophila bunched integrates opposing DPP and EGF signals to set the operculum boundary

inferredcites →https://doi.org/10.1242/jeb.080739openalex-snapshot

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inferredcites →https://doi.org/10.12688/f1000research.9005.1openalex-snapshot

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inferredcites →https://doi.org/10.12688/f1000research.9005.3openalex-snapshot

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A Conserved Supergene Locus Controls Colour Pattern Diversity in Heliconius Butterflies

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Evolution of Sex-Specific Traits through Changes in HOX-Dependent doublesex Expression

inferredcites →https://doi.org/10.1371/journal.pgen.1000008openalex-snapshot

Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits

inferredcites →https://doi.org/10.1371/journal.pgen.1001345openalex-snapshot

Environmental Sex Determination in the Branchiopod Crustacean Daphnia magna: Deep Conservation of a Doublesex Gene in the Sex-Determining Pathway

inferredcites →https://doi.org/10.1371/journal.pgen.1003081openalex-snapshot

dJun and Vri/dNFIL3 Are Major Regulators of Cardiac Aging in Drosophila

inferredcites →https://doi.org/10.1371/journal.pgen.1006170openalex-snapshot

Sex-Specific Selection and Sex-Biased Gene Expression in Humans and Flies

inferredcites →https://doi.org/10.1371/journal.pgen.1006790openalex-snapshot

Specification and spatial arrangement of cells in the germline stem cell niche of the Drosophila ovary depend on the Maf transcription factor Traffic jam

inferredcites →https://doi.org/10.1371/journal.pone.0036463openalex-snapshot

High-Throughput Sequencing to Reveal Genes Involved in Reproduction and Development in Bactrocera dorsalis (Diptera: Tephritidae)

inferredcites →https://doi.org/10.1523/jneurosci.3612-10.2010openalex-snapshot

Peptide-Induced Modulation of Synaptic Transmission and Escape Response inDrosophilaRequires Two G-Protein-Coupled Receptors

inferredcites →https://doi.org/10.1534/g3.116.028951openalex-snapshot

A Genetic Mosaic Screen Reveals Ecdysone-Responsive Genes Regulating Drosophila Oogenesis

inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot

Chromosome Inversions, Local Adaptation and Speciation

inferredcites →https://doi.org/10.1534/genetics.108.088229openalex-snapshot

The Chromosomal Polymorphism Linked to Variation in Social Behavior in the White-Throated Sparrow ( Zonotrichia albicollis ) Is a Complex Rearrangement and Suppressor of Recombination

inferredcites →https://doi.org/10.18637/jss.v033.i02openalex-snapshot

MCMC Methods for Multi-Response Generalized Linear Mixed Models: The MCMCglmm R Package

inferredcites →https://doi.org/10.2202/1544-6115.1027openalex-snapshot

Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

inferredcites →https://doi.org/10.2307/1313508openalex-snapshot

Control Mechanisms of Polyphenic Development in Insects

inferredcites →https://doi.org/10.5962/bhl.title.27468openalex-snapshot

The genetical theory of natural selection

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/ele.13417openalex-snapshot

Temperature drives pre‐reproductive selection and shapes the biogeography of a female polymorphism

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