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A novel mosaic tetracycline resistance gene tet (S/M) detected in a multidrug-resistant pneumococcal CC230 lineage that underwent capsular switching in South Africa

https://doi.org/10.1101/718460
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/plas.1996.0018openalex-snapshot
The Tetracycline Resistance Genetet(M) Exhibits Mosaic Structure
inferredcites →https://doi.org/10.1007/s11356-013-2286-5openalex-snapshot
Daily ingestion of tetracycline residue present in pasteurized milk: a public health problem
inferredcites →https://doi.org/10.1016/0378-1119(93)90665-popenalex-snapshot
Characterization of a new class of tetracycline-resistance gene tet(S) in Listeria monocytogenes BM4210
inferredcites →https://doi.org/10.1016/j.cmi.2015.08.027openalex-snapshot
Strain features and distributions in pneumococci from children with invasive disease before and after 13-valent conjugate vaccine implementation in the USA
inferredcites →https://doi.org/10.1016/j.cmi.2016.08.001openalex-snapshot
Using whole genome sequencing to identify resistance determinants and predict antimicrobial resistance phenotypes for year 2015 invasive pneumococcal disease isolates recovered in the United States
inferredcites →https://doi.org/10.1016/j.ebiom.2019.04.021openalex-snapshot
International Genomic Definition of Pneumococcal Lineages, to Contextualise Disease, Antibiotic Resistance and Vaccine Impact
inferredcites →https://doi.org/10.1016/j.epidem.2018.05.004openalex-snapshot
Tuberculosis outbreak investigation using phylodynamic analysis
inferredcites →https://doi.org/10.1016/j.vaccine.2017.07.009openalex-snapshot
Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi
inferredcites →https://doi.org/10.1016/j.vaccine.2017.11.085openalex-snapshot
Invasive pneumococcal disease in children under 16 years of age: Incomplete rebound in incidence after the maximum effect of PCV13 in 2012/13 in Germany
inferredcites →https://doi.org/10.1016/s1473-3099(18)30052-5openalex-snapshot
Rapid increase in non-vaccine serotypes causing invasive pneumococcal disease in England and Wales, 2000–17: a prospective national observational cohort study
inferredcites →https://doi.org/10.1016/s1473-3099(18)30349-9openalex-snapshot
Incidence of paediatric pneumococcal meningitis and emergence of new serotypes: a time-series analysis of a 16-year French national survey
inferredcites →https://doi.org/10.1016/s2214-109x(18)30247-xopenalex-snapshot
Burden of Streptococcus pneumoniae and Haemophilus influenzae type b disease in children in the era of conjugate vaccines: global, regional, and national estimates for 2000–15
inferredcites →https://doi.org/10.1038/ng.2895openalex-snapshot
Dense genomic sampling identifies highways of pneumococcal recombination
inferredcites →https://doi.org/10.1038/srep14952openalex-snapshot
The post-vaccine microevolution of invasive Streptococcus pneumoniae
inferredcites →https://doi.org/10.1038/srep15843openalex-snapshot
Evolving pneumococcal serotypes and sequence types in relation to high antibiotic stress and conditional pneumococcal immunization
inferredcites →https://doi.org/10.1056/nejmoa1401914openalex-snapshot
Effects of Vaccination on Invasive Pneumococcal Disease in South Africa
inferredcites →https://doi.org/10.1073/pnas.1207965110openalex-snapshot
Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
inferredcites →https://doi.org/10.1093/infdis/jis703openalex-snapshot
Pneumococcal Capsular Switching: A Historical Perspective
inferredcites →https://doi.org/10.1093/infdis/jiu213openalex-snapshot
Reduction of Invasive Pneumococcal Disease 3 Years After the Introduction of the 13-Valent Conjugate Vaccine in the Oxfordshire Region of England
inferredcites →https://doi.org/10.1093/jac/dkm500openalex-snapshot
Identification of tet(S) gene area in tetracycline-resistant Streptococcus dysgalactiae subsp. equisimilis clinical isolates
inferredcites →https://doi.org/10.1093/ve/vew007openalex-snapshot
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
inferredcites →https://doi.org/10.1097/qad.0b013e328341b7f1openalex-snapshot
The impact of antiretroviral treatment on the burden of invasive pneumococcal disease in South African children: a time series analysis
inferredcites →https://doi.org/10.1099/mgen.0.000119openalex-snapshot
Pre-vaccine serotype composition within a lineage signposts its serotype replacement – a carriage study over 7 years following pneumococcal conjugate vaccine use in the UK
inferredcites →https://doi.org/10.1099/mgen.0.000131openalex-snapshot
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
inferredcites →https://doi.org/10.1099/mic.0.058206-0openalex-snapshot
Molecular characterization of a novel mosaic tet(S/M) gene encoding tetracycline resistance in foodborne strains of Streptococcus bovis
inferredcites →https://doi.org/10.1128/aac.40.12.2891openalex-snapshot
Identification of the tetracycline resistance gene, tet(O), in Streptococcus pneumoniae
inferredcites →https://doi.org/10.1128/jb.186.13.4395-4398.2004openalex-snapshot
Characterization of Tn 916 S, a Tn 916 -Like Element Containing the Tetracycline Resistance Determinant tet (S)
inferredcites →https://doi.org/10.1128/jcm.01046-18openalex-snapshot
Effect of Vaccination on Pneumococci Isolated from the Nasopharynx of Healthy Children and the Middle Ear of Children with Otitis Media in Iceland
inferredcites →https://doi.org/10.1128/jcm.01778-16openalex-snapshot
Emergence of Multidrug-Resistant Pneumococcal Serotype 35B among Children in the United States
inferredcites →https://doi.org/10.1128/mbio.01490-14openalex-snapshot
Parallel Evolution of Streptococcus pneumoniae and Streptococcus mitis to Pathogenic and Mutualistic Lifestyles
inferredcites →https://doi.org/10.1128/mmbr.65.2.232-260.2001openalex-snapshot
Tetracycline Antibiotics: Mode of Action, Applications, Molecular Biology, and Epidemiology of Bacterial Resistance
inferredcites →https://doi.org/10.1155/2017/1315497openalex-snapshot
Tetracyclines in Food and Feedingstuffs: From Regulation to Analytical Methods, Bacterial Resistance, and Environmental and Health Implications
inferredcites →https://doi.org/10.1183/13993003.01451-2015openalex-snapshot
Effects of PCV7 and PCV13 on invasive pneumococcal disease and carriage in Stockholm, Sweden
inferredcites →https://doi.org/10.1186/1471-2164-14-500openalex-snapshot
Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0107666openalex-snapshot
Population Snapshot of Streptococcus pneumoniae Causing Invasive Disease in South Africa Prior to Introduction of Pneumococcal Conjugate Vaccines
inferredcites →https://doi.org/10.3201/eid1405.070437openalex-snapshot
Spread ofStreptococcus suisSequence Type 7, China
inferredcites →https://doi.org/10.3201/eid2306.170071openalex-snapshot
Invasive Serotype 35B Pneumococci Including an Expanding Serotype Switch Lineage, United States, 2015–2016
inferredcites →https://doi.org/10.3201/eid2403.170769openalex-snapshot
Emergence ofStreptococcus pneumoniaeSerotype 12F after Sequential Introduction of 7- and 13-Valent Vaccines, Israel
inferredcites →https://doi.org/10.3389/fcimb.2016.00118openalex-snapshot
Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1186/s13073-021-00901-2openalex-snapshot
Global genomic pathogen surveillance to inform vaccine strategies: a decade-long expedition in pneumococcal genomics
inferred← citeshttps://doi.org/10.3412/jsb.78.179openalex-snapshot
Mechanism of high-frequent horizontal gene transfer in Gram positive bacterial pathogens
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