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Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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ggplot2: Elegant Graphics for Data Analysis
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Homing and Straying in Pacific Salmon
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GLACIATIONS | Late Pleistocene Events in Beringia
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Genetic diversity and a population structure analysis of accessions in the Chinese cowpea [ Vigna unguiculata (L.) Walp.] germplasm collection
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Genomic Flatlining in the Endangered Island Fox
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Range Expansion Compromises Adaptive Evolution in an Outcrossing Plant
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Adaptive Evolution Is Common in Rapid Evolutionary Radiations
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The distribution of deleterious genetic variation in human populations
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The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives
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On the decidability of population size histories from finite allele frequency spectra
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Phylogeographic insights into cryptic glacial refugia
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Harnessing genomics for delineating conservation units
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Controlling the false discovery rate in behavior genetics research
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Introduction to Conservation Genetics
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The barrier to genetic exchange between hybridising populations
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Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
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Interpreting principal component analyses of spatial population genetic variation
inferredcites →https://doi.org/10.1038/ng.2896openalex-snapshot
The deleterious mutation load is insensitive to recent population history
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The genetics of inbreeding depression
inferredcites →https://doi.org/10.1038/nrg3931openalex-snapshot
Estimating the mutation load in human genomes
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Genomic effects of population collapse in a critically endangered ironwood tree Ostrya rehderiana
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Comparative phylogeography of Nearctic and Palearctic fishes
inferredcites →https://doi.org/10.1073/pnas.1503717112openalex-snapshot
Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum
inferredcites →https://doi.org/10.1073/pnas.1510805112openalex-snapshot
Distance from sub-Saharan Africa predicts mutational load in diverse human genomes
inferredcites →https://doi.org/10.1073/pnas.1709257114openalex-snapshot
Evolutionary genomics of grape ( Vitis vinifera ssp. vinifera ) domestication
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Coho Salmon Population Structure in North America Determined from Microsatellites
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Hierarchical Phylogeographic Structure of Coho Salmon in California
inferredcites →https://doi.org/10.1086/303312openalex-snapshot
The Effects of a Bottleneck on Inbreeding Depression and the Genetic Load
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Generating samples under a Wright–Fisher neutral model of genetic variation
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The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
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The effect of deleterious mutations on neutral molecular variation.
inferredcites →https://doi.org/10.1093/genetics/160.3.1231openalex-snapshot
A Coalescent-Based Method for Detecting and Estimating Recombination From Gene Sequences
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Pacific salmon abundance trends and climate change
inferredcites →https://doi.org/10.1093/molbev/msy003openalex-snapshot
Accumulation of Mutational Load at the Edges of a Species Range
inferredcites →https://doi.org/10.1098/rspb.2014.1369openalex-snapshot
Turnover and accumulation of genetic diversity across large time-scale cycles of isolation and connection of populations
inferredcites →https://doi.org/10.1098/rstb.2003.1388openalex-snapshot
Genetic consequences of climatic oscillations in the Quaternary
inferredcites →https://doi.org/10.1098/rstb.2016.0471openalex-snapshot
Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies
inferredcites →https://doi.org/10.1101/605147openalex-snapshot
Purging of highly deleterious mutations through severe bottlenecks in Alpine ibex
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1111/1755-0998.12503openalex-snapshot
Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations
inferredcites →https://doi.org/10.1111/1755-0998.12990openalex-snapshot
Genotype‐free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data
inferredcites →https://doi.org/10.1111/2041-210x.12382openalex-snapshot
LEA: An R package for landscape and ecological association studies
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Post-glacial re-colonization of European biota
inferredcites →https://doi.org/10.1111/j.1095-8649.1994.tb01200.xopenalex-snapshot
A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05578.xopenalex-snapshot
The trouble with isolation by distance
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hierfstat , a package for r to compute and test hierarchical F ‐statistics
inferredcites →https://doi.org/10.1111/j.1523-1739.2007.00693.xopenalex-snapshot
Pacific Salmon Extinctions: Quantifying Lost and Remaining Diversity
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/jbi.12254openalex-snapshot
The ecological and evolutionary implications of microrefugia
inferredcites →https://doi.org/10.1111/mec.12524openalex-snapshot
On the accumulation of deleterious mutations during range expansions
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13154openalex-snapshot
Expansion load: recessive mutations and the role of standing genetic variation
inferredcites →https://doi.org/10.1111/mec.13390openalex-snapshot
The consequences of not accounting for background selection in demographic inference
inferredcites →https://doi.org/10.1111/mec.13664openalex-snapshot
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
inferredcites →https://doi.org/10.1111/mec.14393openalex-snapshot
Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char
inferredcites →https://doi.org/10.1126/sciadv.aau0757openalex-snapshot
Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction
inferredcites →https://doi.org/10.1126/science.1083264openalex-snapshot
Glacial Refugia: Hotspots But Not Melting Pots of Genetic Diversity
inferredcites →https://doi.org/10.1126/science.1148744openalex-snapshot
Declining Wild Salmon Populations in Relation to Parasites from Farm Salmon
inferredcites →https://doi.org/10.1126/science.1153717openalex-snapshot
Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
inferredcites →https://doi.org/10.1126/science.218.4573.675openalex-snapshot
Ice-Free Conditions on the Queen Charlotte Islands, British Columbia, at the Height of Late Wisconsin Glaciation
inferredcites →https://doi.org/10.1126/science.aaa3952openalex-snapshot
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13059-016-1090-1openalex-snapshot
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
inferredcites →https://doi.org/10.1371/journal.pbio.2000234openalex-snapshot
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot
Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pgen.1007741openalex-snapshot
Deleterious variation shapes the genomic landscape of introgression
inferredcites →https://doi.org/10.1371/journal.pone.0046688openalex-snapshot
Predicting the Functional Effect of Amino Acid Substitutions and Indels
inferredcites →https://doi.org/10.1371/journal.pone.0195461openalex-snapshot
Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
inferredcites →https://doi.org/10.1534/g3.111.000240openalex-snapshot
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
inferredcites →https://doi.org/10.1534/genetics.111.134288openalex-snapshot
The Effects of Deleterious Mutations on Evolution at Linked Sites
inferredcites →https://doi.org/10.1534/genetics.116.192708openalex-snapshot
Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population
inferredcites →https://doi.org/10.1534/genetics.116.198424openalex-snapshot
A Unified Characterization of Population Structure and Relatedness
inferredcites →https://doi.org/10.1534/genetics.117.300144openalex-snapshot
Accumulation of Deleterious Mutations During Bacterial Range Expansions
inferredcites →https://doi.org/10.1534/genetics.117.300551openalex-snapshot
Relaxed Selection During a Recent Human Expansion
inferredcites →https://doi.org/10.18637/jss.v022.i04openalex-snapshot
The ade4 Package: Implementing the Duality Diagram for Ecologists
inferredcites →https://doi.org/10.2307/1442872openalex-snapshot
Freshwater Fishes of North-Western Canada and Alaska
inferredcites →https://doi.org/10.24072/pcjournal.70openalex-snapshot
A bird’s white-eye view on avian sex chromosome evolution
inferredcites →https://doi.org/10.3389/fgene.2017.00139openalex-snapshot
The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.7554/elife.36317openalex-snapshot
Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/eva.13035openalex-snapshot
Demographic history and genomics of local adaptation in blue tit populations
inferred← citeshttps://doi.org/10.1111/mec.17509openalex-snapshot
Recurrent selection shapes the genomic landscape of differentiation between a pair of host‐specialized haplodiploids that diverged with gene flow
inferred← citeshttps://doi.org/10.1134/s0026893320060163openalex-snapshot
Phylogeography and Mitochondrial Polymorphism of Asian Coho Salmon
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