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Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

https://doi.org/10.1038/hdy.2009.151

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A species definition for the modern synthesis

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Recent advances in assessing gene flow between diverging populations and species

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An approximate likelihood for genetic data under a model with recombination and population splitting

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Adaptation and speciation: what can Fst tell us?

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Chromosomal rearrangements and speciation

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Variation in recombination rate across the genome: evidence and implications

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The hitch-hiking effect of a favourable gene

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The hitch-hiking effect of a favourable gene

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DNA analysis of transferred sperm reveals significant levels of gene flow between molecular forms ofAnopheles gambiae

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Chromosome speciation: Humans, Drosophila , and mosquitoes

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Centromere-proximal differentiation and speciation in Anopheles gambiae

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Chromosomal inversions and the reproductive isolation of species

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Hybridization in the Recent Past

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Hybrid Zones and the Genetic Architecture of a Barrier to Gene Flow Between Two Sunflower Species

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Consequences of Recombination Rate Variation on Quantitative Trait Locus Mapping Studies: Simulations Based on the Drosophila melanogaster Genome

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Evidence for Inversion Polymorphism Related to Sympatric Host Race Formation in the Apple Maggot Fly,Rhagoletis pomonella

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Genomic Patterns of Adaptive Divergence between Chromosomally Differentiated Sunflower Species

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ACCUMULATING POSTZYGOTIC ISOLATION GENES IN PARAPATRY: A NEW TWIST ON CHROMOSOMAL SPECIATION

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A TEST OF THE CHROMOSOMAL REARRANGEMENT MODEL OF SPECIATION IN DROSOPHILA PSEUDOOBSCURA

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LINKAGE-DEPENDENT GENE FLOW IN A HOUSE MOUSE CHROMOSOMAL HYBRID ZONE

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AN ANOMALOUS HYBRID ZONE IN DROSOPHILA

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RESTRICTED GENE FLOW AT SPECIFIC PARTS OF THE SHREW GENOME IN CHROMOSOMAL HYBRID ZONES

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Recombination and speciation

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Multilocus nuclear sequences reveal intra‐ and interspecific relationships among chromosomally polymorphic species of cactophilic Drosophila

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Divergent selection and heterogeneous genomic divergence

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Inferring the history of speciation in house mice from autosomal, X‐linked, Y‐linked and mitochondrial genes

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Chromosomal rearrangements and genetic structure at different evolutionary levels of theSorex araneusgroup

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KARYOTYPIC DIVERSITY AND SPECIATION IN AGRODIAETUS BUTTERFLIES

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LEARNING ABOUT MODES OF SPECIATION BY COMPUTATIONAL APPROACHES

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CHROMOSOMAL INVERSIONS AND SPECIES DIFFERENCES: WHEN ARE GENES AFFECTING ADAPTIVE DIVERGENCE AND REPRODUCTIVE ISOLATION EXPECTED TO RESIDE WITHIN INVERSIONS?

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Dobzhansky's Genetics of Natural Populations, I-XLIII

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Patterns of inversion polymorphism in three species of the Drosophila melanogaster species group.

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Molecular Evolutionary Genetics

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Hybrid inferiority and genetic incompatibilities drive divergence of fungal pathogens infecting the same host

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Morphological, Genetic, and Chromosomal Variation at a Small Spatial Scale within a Mosaic Hybrid Zone of the Grasshopper Dichroplus pratensis Bruner (Acrididae)

inferred← citeshttps://doi.org/10.1093/jhered/esu038openalex-snapshot

Genome-Wide Congealing and Rapid Transitions across the Speciation Continuum during Speciation with Gene Flow

inferred← citeshttps://doi.org/10.1093/jxb/erx297openalex-snapshot

Hybrids and horizontal transfer: introgression allows adaptive allele discovery

inferred← citeshttps://doi.org/10.1093/molbev/msaa218openalex-snapshot

Few Fixed Variants between Trophic Specialist Pupfish Species Reveal CandidateCis-Regulatory Alleles Underlying Rapid Craniofacial Divergence

inferred← citeshttps://doi.org/10.1093/molbev/msac064openalex-snapshot

Species Persistence with Hybridization in Toad-Headed Lizards Driven by Divergent Selection and Low Recombination

inferred← citeshttps://doi.org/10.1093/molbev/msac223openalex-snapshot

Patterns of Population Structure and Introgression Among Recently Differentiated Drosophila melanogaster Populations

inferred← citeshttps://doi.org/10.1093/molbev/msad166openalex-snapshot

Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of Heliconius Butterflies

inferred← citeshttps://doi.org/10.1093/molbev/msaf092openalex-snapshot

Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow

inferred← citeshttps://doi.org/10.1093/molbev/msr199openalex-snapshot

Gene Flow-Dependent Genomic Divergence between Anopheles gambiae M and S Forms

inferred← citeshttps://doi.org/10.1093/molbev/mss272openalex-snapshot

Recombination Rates and Genomic Shuffling in Human and Chimpanzee—A New Twist in the Chromosomal Speciation Theory

inferred← citeshttps://doi.org/10.1093/molbev/msu269openalex-snapshot

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

inferred← citeshttps://doi.org/10.1093/molbev/msv011openalex-snapshot

Functional Organization of the Genome May Shape the Species Boundary in the House Mouse

inferred← citeshttps://doi.org/10.1093/molbev/msw051openalex-snapshot

Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens

inferred← citeshttps://doi.org/10.1093/molbev/msw286openalex-snapshot

Novel candidate genes underlying extreme trophic specialization in Caribbean pupfishes

inferred← citeshttps://doi.org/10.1093/molbev/msy051openalex-snapshot

Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids

inferred← citeshttps://doi.org/10.1093/molbev/msz252openalex-snapshot

Higher Gene Flow in Sex-Related Chromosomes than in Autosomes during Fungal Divergence

inferred← citeshttps://doi.org/10.1093/molbev/msz260openalex-snapshot

Genomic Resources for Darters (Percidae: Etheostominae) Provide Insight into Postzygotic Barriers Implicated in Speciation

inferred← citeshttps://doi.org/10.1093/nsr/nwac294openalex-snapshot

Speciation: genomic sequence data and the biogeography of speciation

inferred← citeshttps://doi.org/10.1093/obo/9780199941728-0055openalex-snapshot

Speciation Genetics and Genomics

inferred← citeshttps://doi.org/10.1093/sysbio/syw016openalex-snapshot

Integrative Taxonomy Recognizes Evolutionary Units Despite Widespread Mitonuclear Discordance: Evidence from a Rotifer Cryptic Species Complex

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlab047openalex-snapshot

Taxonomy in the phylogenomic era: species boundaries and phylogenetic relationships among North American ants of theCrematogaster scutellarisgroup (Formicidae: Hymenoptera)

inferred← citeshttps://doi.org/10.1097/coh.0000000000000137openalex-snapshot

Contribution of recombination to the evolutionary history of HIV

inferred← citeshttps://doi.org/10.1098/rsos.210727openalex-snapshot

Parallel introgression, not recurrent emergence, explains apparent elevational ecotypes of polyploid Himalayan snowtrout

inferred← citeshttps://doi.org/10.1098/rspb.2012.2322openalex-snapshot

The genomics of adaptation

inferred← citeshttps://doi.org/10.1098/rstb.2011.0188openalex-snapshot

No evidence for biased co-transmission of speciation islands in Anopheles gambiae

inferred← citeshttps://doi.org/10.1098/rstb.2011.0197openalex-snapshot

Genome-wide patterns of divergence during speciation: the lake whitefish case study

inferred← citeshttps://doi.org/10.1098/rstb.2011.0249openalex-snapshot

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

inferred← citeshttps://doi.org/10.1098/rstb.2011.0256openalex-snapshot

Establishment of new mutations under divergence and genome hitchhiking

inferred← citeshttps://doi.org/10.1098/rstb.2011.0260openalex-snapshot

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

inferred← citeshttps://doi.org/10.1098/rstb.2011.0263openalex-snapshot

Genomic divergence during speciation: causes and consequences

inferred← citeshttps://doi.org/10.1098/rstb.2019.0533openalex-snapshot

The importance of intrinsic postzygotic barriers throughout the speciation process

inferred← citeshttps://doi.org/10.1101/009837openalex-snapshot

Reticulate speciation and adaptive introgression in the Anopheles gambiae species complex

inferred← citeshttps://doi.org/10.1101/029561openalex-snapshot

Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens

inferred← citeshttps://doi.org/10.1101/041467openalex-snapshot

Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in greenish warblers

inferred← citeshttps://doi.org/10.1101/068205openalex-snapshot

Chromosome arm specific patterns of polymorphism associated with chromosomal inversions in the major African malaria vector, Anopheles funestus

inferred← citeshttps://doi.org/10.1101/095596openalex-snapshot

Mitochondrial-nuclear interactions maintain geographic separation of deeply diverged mitochondrial lineages in the face of nuclear gene flow

inferred← citeshttps://doi.org/10.1101/2020.03.23.003558openalex-snapshot

The evolution of suppressed recombination between sex chromosomes by chromosomal inversions

inferred← citeshttps://doi.org/10.1101/2020.06.03.132662openalex-snapshot

Local adaptation can cause both peaks and troughs in nucleotide diversity within populations

inferred← citeshttps://doi.org/10.1101/2020.11.03.354068openalex-snapshot

Selection on old variants drives adaptive radiation of Metrosideros across the Hawaiian Islands

inferred← citeshttps://doi.org/10.1101/2023.10.19.563036openalex-snapshot

Gene flow throughout the evolutionary history of a polymorphic and generalist clownfish

inferred← citeshttps://doi.org/10.1101/2024.09.02.610918openalex-snapshot

Contribution of local recombination and AT-biased mutations to differentiated region formation in Apis cerana

inferred← citeshttps://doi.org/10.1101/2024.11.29.625973openalex-snapshot

Untangling the contribution of adaptive versus non-adaptive processes in the evolution of reproductive isolation between Coenonympha butterflies

inferred← citeshttps://doi.org/10.1101/2025.04.21.649836openalex-snapshot

Computer Simulations and Analyses of Coupling Among Reproductive Barriers in Late-Stage Sympatric Speciation

inferred← citeshttps://doi.org/10.1101/2025.09.19.677379openalex-snapshot

Strong but diffuse genetic divergence underlies differentiation in an incipient species of marine stickleback

inferred← citeshttps://doi.org/10.1101/2025.09.25.678555openalex-snapshot

Genome-wide signatures of reproductive isolation shape the varied genomic landscape of the roundtail horned lizard ( Phrynosoma modestum )

inferred← citeshttps://doi.org/10.1101/2025.09.29.679196openalex-snapshot

NOD-like receptor genes evolve under diversity-enhancing mechanisms in a fungal species complex

inferred← citeshttps://doi.org/10.1101/217984openalex-snapshot

Don’t throw out the sympatric species with the crater lake water: fine-scale investigation of introgression provides weak support for functional role of secondary gene flow in one of the clearest examples of sympatric speciation

inferred← citeshttps://doi.org/10.1101/731919openalex-snapshot

Adaptive Introgression Promotes Fast Adaptation In Oaks Marginal Populations

inferred← citeshttps://doi.org/10.1101/732750openalex-snapshot

Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

inferred← citeshttps://doi.org/10.1101/786038openalex-snapshot

Model-based assessments of differential introgression and linked natural selection during divergence and speciation

inferred← citeshttps://doi.org/10.1101/cshperspect.a041438openalex-snapshot

Genomic Approaches Are Improving Taxonomic Representation in Genetic Studies of Speciation

inferred← citeshttps://doi.org/10.1101/gr.159426.113openalex-snapshot

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

inferred← citeshttps://doi.org/10.1101/gr.187237.114openalex-snapshot

Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis

inferred← citeshttps://doi.org/10.1101/gr.196485.115openalex-snapshot

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

inferred← citeshttps://doi.org/10.1101/gr.212522.116openalex-snapshot

Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches

inferred← citeshttps://doi.org/10.1101/gr.281193.125openalex-snapshot

Dynamic body size evolution during speciation of predatory cichlid fishes in the Lake Malawi superradiation

inferred← citeshttps://doi.org/10.1105/tpc.111.085605openalex-snapshot

Conservation and Purifying Selection of Transcribed Genes Located in a Rice Centromere

inferred← citeshttps://doi.org/10.1111/1755-0998.12369openalex-snapshot

Linkage disequilibrium network analysis ( LD na) gives a global view of chromosomal inversions, local adaptation and geographic structure

inferred← citeshttps://doi.org/10.1111/1755-0998.13326openalex-snapshot

pixy : Unbiased estimation of nucleotide diversity and divergence in the presence of missing data

inferred← citeshttps://doi.org/10.1111/1755-0998.13969openalex-snapshot

The great tit HapMap project: A continental‐scale analysis of genomic variation in a songbird

inferred← citeshttps://doi.org/10.1111/1755-0998.14078openalex-snapshot

Integration of De Novo Chromosome‐Level Genome and Population Resequencing of Peganum (Nitrariaceae): A Case Study of Speciation and Evolutionary Trajectories in Arid Central Asia

inferred← citeshttps://doi.org/10.1111/2041-210x.12324openalex-snapshot

Towards the identification of the loci of adaptive evolution

inferred← citeshttps://doi.org/10.1111/2041-210x.13324openalex-snapshot

The multiple population genetic and demographic routes to islands of genomic divergence

inferred← citeshttps://doi.org/10.1111/brv.12213openalex-snapshot

Chromosomal polymorphism in mammals: an evolutionary perspective

inferred← citeshttps://doi.org/10.1111/ele.12460openalex-snapshot

Experimental evidence of genome‐wide impact of ecological selection during early stages of speciation‐with‐gene‐flow

inferred← citeshttps://doi.org/10.1111/eva.12492openalex-snapshot

Genomic insights into adaptive divergence and speciation among malaria vectors of the Anopheles nili group

inferred← citeshttps://doi.org/10.1111/eva.12919openalex-snapshot

Genotyping‐by‐sequencing illuminates high levels of divergence among sympatric forms of coregonines in the Laurentian Great Lakes

inferred← citeshttps://doi.org/10.1111/eva.13046openalex-snapshot

Genetic architecture, demographic history, and genomic differentiation of Populus davidiana revealed by whole‐genome resequencing

inferred← citeshttps://doi.org/10.1111/eva.13488openalex-snapshot

Genomic differentiation in Pacific cod using P ool‐ S eq

inferred← citeshttps://doi.org/10.1111/evo.12021openalex-snapshot

GENOME DIVERGENCE AND THE GENETIC ARCHITECTURE OF BARRIERS TO GENE FLOW BETWEENLYCAEIDES IDASANDL. MELISSA

inferred← citeshttps://doi.org/10.1111/evo.12054openalex-snapshot

UNDERSTANDING THE BASIS OF DIMINISHED GENE FLOW BETWEEN HYBRIDIZING CHROMOSOME RACES OF THE HOUSE MOUSE

inferred← citeshttps://doi.org/10.1111/evo.12075openalex-snapshot

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

inferred← citeshttps://doi.org/10.1111/evo.12106openalex-snapshot

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

inferred← citeshttps://doi.org/10.1111/evo.12191openalex-snapshot

GENOME EVOLUTION AND SPECIATION: TOWARD QUANTITATIVE DESCRIPTIONS OF PATTERN AND PROCESS

inferred← citeshttps://doi.org/10.1111/evo.12278openalex-snapshot

THE EVOLUTION OF LANDSCAPE GENETICS

inferred← citeshttps://doi.org/10.1111/evo.12326openalex-snapshot

THE RATE TEST OF SPECIATION: ESTIMATING THE LIKELIHOOD OF NON-ALLOPATRIC SPECIATION FROM REPRODUCTIVE ISOLATION RATES INDROSOPHILA

inferred← citeshttps://doi.org/10.1111/evo.12650openalex-snapshot

Genome-wide tests for introgression between cactophilicDrosophilaimplicate a role of inversions during speciation

inferred← citeshttps://doi.org/10.1111/evo.13175openalex-snapshot

Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes

inferred← citeshttps://doi.org/10.1111/evo.13435openalex-snapshot

Demography and selection shape transcriptomic divergence in field crickets

inferred← citeshttps://doi.org/10.1111/evo.13486openalex-snapshot

The demographic history of Atlantic salmon ( Salmo salar ) across its distribution range reconstructed from approximate Bayesian computations*

inferred← citeshttps://doi.org/10.1111/evo.13796openalex-snapshot

Ecological speciation in sympatric palms: 3. Genetic map reveals genomic islands underlying species divergence in Howea

inferred← citeshttps://doi.org/10.1111/evo.13868openalex-snapshot

Pleistocene glacial cycles drove lineage diversification and fusion in the Yosemite toad ( Anaxyrus canorus )

inferred← citeshttps://doi.org/10.1111/evo.14612openalex-snapshot

Evidence that genomic incompatibilities and other multilocus processes impact hybrid fitness in a rattlesnake hybrid zone

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2011.05046.xopenalex-snapshot

The n = 1 constraint in population genomics

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2011.05080.xopenalex-snapshot

The coupling hypothesis: why genome scans may fail to map local adaptation genes

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2011.05285.xopenalex-snapshot

Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2011.05350.xopenalex-snapshot

A framework for comparing processes of speciation in the presence of gene flow

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2012.05509.xopenalex-snapshot

Genome divergence during evolutionary diversification as revealed in replicate lake–stream stickleback population pairs

inferred← citeshttps://doi.org/10.1111/j.1420-9101.2011.02259.xopenalex-snapshot

Characterization of a divergent chromosome region in the willow warbler Phylloscopus trochilus using avian genomic resources

inferred← citeshttps://doi.org/10.1111/j.1558-5646.2010.01092.xopenalex-snapshot

SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES

inferred← citeshttps://doi.org/10.1111/j.1558-5646.2011.01478.xopenalex-snapshot

CHROMOSOMAL REARRANGEMENTS DO NOT SEEM TO AFFECT THE GENE FLOW IN HYBRID ZONES BETWEEN KARYOTYPIC RACES OF THE COMMON SHREW (SOREX ARANEUS)

inferred← citeshttps://doi.org/10.1111/j.1558-5646.2012.01785.xopenalex-snapshot

THE LANGUAGE OF SPECIATION

inferred← citeshttps://doi.org/10.1111/j.1749-6632.2011.06381.xopenalex-snapshot

Development and evolution of character displacement

inferred← citeshttps://doi.org/10.1111/jeb.12009openalex-snapshot

Hybridization and the build‐up of genomic divergence during speciation

inferred← citeshttps://doi.org/10.1111/jeb.12765openalex-snapshot

The genomic bases of morphological divergence and reproductive isolation driven by ecological speciation in Senecio (Asteraceae)

inferred← citeshttps://doi.org/10.1111/jeb.13047openalex-snapshot

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

inferred← citeshttps://doi.org/10.1111/jeb.13105openalex-snapshot

Barnacles, barrier loci and the systematic building of species

inferred← citeshttps://doi.org/10.1111/jeb.13108openalex-snapshot

Dissecting differentiation landscapes: a linked selection's perspective

inferred← citeshttps://doi.org/10.1111/jeb.13109openalex-snapshot

Come on feel the noise – from metaphors to null models

inferred← citeshttps://doi.org/10.1111/jeb.13112openalex-snapshot

Speciation, species persistence and the goals of studying genomic barriers to gene flow

inferred← citeshttps://doi.org/10.1111/jeb.13113openalex-snapshot

Parallelism in genomic landscapes of differentiation, conserved genomic features and the role of linked selection

inferred← citeshttps://doi.org/10.1111/jeb.13116openalex-snapshot

Evolution of recombination rates and the genomic landscape of speciation

inferred← citeshttps://doi.org/10.1111/jeb.13129openalex-snapshot

Land ahoy? Navigating the genomic landscape of speciation while avoiding shipwreck

inferred← citeshttps://doi.org/10.1111/jeb.13664openalex-snapshot

Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats

inferred← citeshttps://doi.org/10.1111/jeb.14057openalex-snapshot

Using neutral loci to quantify reproductive isolation and speciation: a commentary on Westram et al., 2022

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