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Ancestral reconstruction of sunflower karyotypes reveals non-random chromosomal evolution

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Outgoing claims: the papers this work cites, builds on, or argues with.

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From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
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HOMOPLOID RETICULATE EVOLUTION IN HELIANTHUS (ASTERACEAE): EVIDENCE FROM RIBOSOMAL GENES
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Algorithms for the Extraction of Synteny Blocks from Comparative Maps
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Karyotype Diversity and Evolutionary Trends in Angiosperms
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Interspecific hybrids between helianthus PetiolarisNutt. and H. Annuus L.: Effect of backcrossing on meiosis
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Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect. Helianthus
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Simple sequence repeat map of the sunflower genome
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A high-density consensus map of A and B wheat genomes
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On recovering syntenic blocks from comparative maps
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Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes
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Centromere Strength Provides the Cell Biological Basis for Meiotic Drive and Karyotype Evolution in Mice
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Evidence for meiotic drive as an explanation for karyotype changes in fishes
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The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes
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Chromosomal rearrangements and speciation
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Chromosomal rearrangements, speciation and the theoretical approach
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Recombination suppressors and the evolution of new species
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Genome sequencing and analysis of the model grass Brachypodium distachyon
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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
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Massive haplotypes underlie ecotypic differentiation in sunflowers
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Comparative linkage mapping of diploid, tetraploid, and hexaploid Avena species suggests extensive chromosome rearrangement in ancestral diploids
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Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription
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Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps
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Genomic rearrangements and the evolution of clusters of locally adaptive loci
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Chromosomal inversions and the reproductive isolation of species
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Groups of galaxies. I - Nearby groups
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Hybridization in the Annual Sunflowers: Helianthus annuus x H. argophyllus
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How Old Are Sunflowers? A Molecular Clock Analysis of Key Divergences in the Origin and Diversification of Helianthus (Asteraceae)
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Karyotypic Evolution and Chromosomal Organization of Repetitive DNA Sequences in Species of Panaque , Panaqolus , and Scobinancistrus (Siluriformes and Loricariidae) from the Amazon Basin
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Association between simple sequence repeat-rich chromosome regions and intergenomic translocation breakpoints in natural populations of allopolyploid wild wheats
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The bright side of transposons in crop evolution
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R/qtl: QTL mapping in experimental crosses
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Fast and accurate long-read alignment with Burrows–Wheeler transform
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The variant call format and VCFtools
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LinkageMapView—rendering high-resolution linkage and QTL maps
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Transposable Element Proliferation and Genome Expansion Are Rare in Contemporary Sunflower Hybrid Populations Despite Widespread Transcriptional Activity of LTR Retrotransposons
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Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps
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Chromosomal and genic barriers to introgression in Helianthus.
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Meiotic Transmission Rates Correlate With Physical Features of Rearranged Centromeres in Maize
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Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
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SyMAP v3.4: a turnkey synteny system with application to plant genomes
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Simple cDNA normalization using kamchatka crab duplex-specific nuclease
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Chromosomal Hybrid Zones in Eutherian Mammals
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B chromosomes are more frequent in mammals with acrocentric karyotypes: support for the theory of centromeric drive
inferredcites →https://doi.org/10.1101/829622openalex-snapshot
Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype
inferredcites →https://doi.org/10.1101/gr.086546.108openalex-snapshot
Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
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Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
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Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes
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Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
inferredcites →https://doi.org/10.1111/evo.12154openalex-snapshot
CHROMOSOMAL REARRANGEMENTS AND THE GENETICS OF REPRODUCTIVE BARRIERS INMIMULUS(MONKEY FLOWERS)
inferredcites →https://doi.org/10.1111/evo.12503openalex-snapshot
Chromosomal rearrangements directly cause underdominant F 1 pollen sterility in Mimulus lewisii–Mimulus cardinalis hybrids
inferredcites →https://doi.org/10.1111/evo.13682openalex-snapshot
Meiotic drive shapes rates of karyotype evolution in mammals
inferredcites →https://doi.org/10.1111/j.1365-313x.2012.05072.xopenalex-snapshot
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00415.xopenalex-snapshot
MOLECULAR DEMOGRAPHIC HISTORY OF THE ANNUAL SUNFLOWERSHELIANTHUS ANNUUSANDH. PETIOLARIS-LARGE EFFECTIVE POPULATION SIZES AND RATES OF LONG-TERM GENE FLOW
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01269.xopenalex-snapshot
THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01537.xopenalex-snapshot
RECONCILING EXTREMELY STRONG BARRIERS WITH HIGH LEVELS OF GENE EXCHANGE IN ANNUAL SUNFLOWERS
inferredcites →https://doi.org/10.1111/tpj.13964openalex-snapshot
Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size
inferredcites →https://doi.org/10.1126/science.1080600openalex-snapshot
Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes
inferredcites →https://doi.org/10.1126/science.1111387openalex-snapshot
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps
inferredcites →https://doi.org/10.1139/g07-072openalex-snapshot
Chromosomal rearrangements in wheat: their types and distribution
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Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?
inferredcites →https://doi.org/10.1159/000079311openalex-snapshot
B chromosomes and Robertsonian fusions of Dichroplus pratensis (Acrididae): intraspecific support for the centromeric drive theory
inferredcites →https://doi.org/10.1159/000121084openalex-snapshot
Repetitive DNA and chromosomal rearrangements: speciation-related events in plant genomes
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Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
inferredcites →https://doi.org/10.1186/1471-2164-11-182openalex-snapshot
Chromosomal evolution in the plant family Solanaceae
inferredcites →https://doi.org/10.1186/gb-2004-5-4-r23openalex-snapshot
Hotspots of mammalian chromosomal evolution
inferredcites →https://doi.org/10.1186/s12862-019-1515-zopenalex-snapshot
Chromosomal phylogeny and comparative chromosome painting among Neacomys species (Rodentia, Sigmodontinae) from eastern Amazonia
inferredcites →https://doi.org/10.1186/s13059-019-1727-yopenalex-snapshot
Performance of neural network basecalling tools for Oxford Nanopore sequencing
inferredcites →https://doi.org/10.1371/journal.pbio.2002527openalex-snapshot
Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination
inferredcites →https://doi.org/10.1371/journal.pcbi.1006949openalex-snapshot
GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity
inferredcites →https://doi.org/10.1371/journal.pgen.1003378openalex-snapshot
Association Mapping and the Genomic Consequences of Selection in Sunflower
inferredcites →https://doi.org/10.1371/journal.pone.0032253openalex-snapshot
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
inferredcites →https://doi.org/10.1371/journal.pone.0055913openalex-snapshot
Consequences of Normalizing Transcriptomic and Genomic Libraries of Plant Genomes Using a Duplex-Specific Nuclease and Tetramethylammonium Chloride
inferredcites →https://doi.org/10.1371/journal.pone.0092621openalex-snapshot
SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes
inferredcites →https://doi.org/10.14288/1.0228559openalex-snapshot
The ecology and genetics of adaptation and speciation in dune sunflowers
inferredcites →https://doi.org/10.1534/g3.112.002659openalex-snapshot
Development of a 10,000 Locus Genetic Map of the Sunflower Genome Based on Multiple Crosses
inferredcites →https://doi.org/10.1534/g3.114.012096openalex-snapshot
Insight Into Genomic Changes Accompanying Divergence: Genetic Linkage Maps and Synteny ofLucania goodeiandL. parvaReveal a Robertsonian Fusion
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Extensive Chromosomal Repatterning and the Evolution of Sterility Barriers in Hybrid Sunflower Species
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Centromere Locations and Associated Chromosome Rearrangements in Arabidopsis lyrata and A. thaliana
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Homeologous Recombination Plays a Major Role in Chromosome Rearrangements That Occur During Meiosis of Brassica napus Haploids
inferredcites →https://doi.org/10.1534/genetics.107.086108openalex-snapshot
Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes
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The Fate of Chromosomes and Alleles in an AllohexaploidBrassicaPopulation
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A RAD-Tag Genetic Map for the Platyfish ( Xiphophorus maculatus ) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish
inferredcites →https://doi.org/10.1534/genetics.114.165548openalex-snapshot
Chromosomal Evolution and Patterns of Introgression inHelianthus
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Accounting for Errors in Low Coverage High-Throughput Sequencing Data When Constructing Genetic Maps Using Biparental Outcrossed Populations
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Fine-Mapping Complex Inversion Breakpoints and Investigating Somatic Pairing in the Anopheles gambiae Species Complex Using Proximity-Ligation Sequencing
inferredcites →https://doi.org/10.1534/genetics.167.1.449openalex-snapshot
Comparative Mapping and Rapid Karyotypic Evolution in the Genus Helianthus
inferredcites →https://doi.org/10.18637/jss.v079.i06openalex-snapshot
R Package ASMap : Efficient Genetic Linkage Map Construction and Diagnosis
inferredcites →https://doi.org/10.2144/000113422openalex-snapshot
Normalization of Genomic DNA Using Duplex-Specific Nuclease
inferredcites →https://doi.org/10.2307/2405326openalex-snapshot
Hybridization Between the Sunflower Species Helianthus annuus and H. petiolaris
inferredcites →https://doi.org/10.2307/2406084openalex-snapshot
Morphological and Cytological Variation in Helianthus petiolaris with Notes on Related Species
inferredcites →https://doi.org/10.2307/2419126openalex-snapshot
Chromosomal Differentiation among the Annual Helianthus Species
inferredcites →https://doi.org/10.2307/2481785openalex-snapshot
Taxonomic and Cytological Notes on the Annual Species of Helianthus
inferredcites →https://doi.org/10.2307/4119796openalex-snapshot
Phytochemical Ecology, Phytochemical Society Symposia Series no. 8
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Synergisms between microbial pathogens in plant disease complexes: a growing trend
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Detection of Diurnal Variation of Tomato Transcriptome through the Molecular Timetable Method in a Sunlight-Type Plant Factory
inferredcites →https://doi.org/10.3390/cancers10010013openalex-snapshot
Translocation Breakpoints Preferentially Occur in Euchromatin and Acrocentric Chromosomes
inferredcites →https://doi.org/10.3390/genes8100290openalex-snapshot
Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants
inferredcites →https://doi.org/10.3390/ijms11020492openalex-snapshot
Effective Population Size, Gene Flow, and Species Status in a Narrow Endemic Sunflower, Helianthus neglectus, Compared to Its Widespread Sister Species, H. petiolaris
inferredcites →https://doi.org/10.3732/ajb.1500031openalex-snapshot
Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment
inferredcites →https://doi.org/10.3732/ajb.1600113openalex-snapshot
Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae
inferredcites →https://doi.org/10.3732/ajb.1600295openalex-snapshot
Genome‐wide genotyping‐by‐sequencing data provide a high‐resolution view of wild Helianthus diversity, genetic structure, and interspecies gene flow
inferredcites →https://doi.org/10.3835/plantgenome2009.05.0015openalex-snapshot
Karyotypic Evolution of the Common and Silverleaf Sunflower Genomes
inferredcites →https://doi.org/10.7554/elife.02630openalex-snapshot
Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genetic Mutations and Molecular Detection Techniques in Plant Breeding
inferred← citeshttps://doi.org/10.1038/s41586-020-2467-6openalex-snapshot
Massive haplotypes underlie ecotypic differentiation in sunflowers
inferred← citeshttps://doi.org/10.1051/ocl/2020004openalex-snapshot
Gene banks for wild and cultivated sunflower genetic resources
inferred← citeshttps://doi.org/10.1111/mec.15428openalex-snapshot
Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype
inferred← citeshttps://doi.org/10.1111/nph.16415openalex-snapshot
Chromosome restructuring among hybridizing wild wheats
inferred← citeshttps://doi.org/10.3389/fpls.2020.00296openalex-snapshot
Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants
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