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An alternative AUG codon in segment 5 of the 2009 pandemic influenza A virus is a swine-derived virulence motif

https://doi.org/10.1101/738427
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00705-011-0947-6openalex-snapshot
Atypical characteristics of nucleoprotein of pandemic influenza virus H1N1 and their roles in reassortment restriction
inferredcites →https://doi.org/10.1016/0092-8674(86)90762-2openalex-snapshot
Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
inferredcites →https://doi.org/10.1016/j.chom.2010.05.009openalex-snapshot
Influenza Virus Evolution, Host Adaptation, and Pandemic Formation
inferredcites →https://doi.org/10.1016/j.jiph.2015.10.009openalex-snapshot
The environmental deposition of influenza virus from patients infected with influenza A(H1N1)pdm09: Implications for infection prevention and control
inferredcites →https://doi.org/10.1016/j.virol.2010.02.024openalex-snapshot
Substitution of lysine at 627 position in PB2 protein does not change virulence of the 2009 pandemic H1N1 virus in mice
inferredcites →https://doi.org/10.1016/j.virol.2014.01.023openalex-snapshot
Large-scale analysis of influenza A virus nucleoprotein sequence conservation reveals potential drug-target sites
inferredcites →https://doi.org/10.1016/j.virol.2017.01.015openalex-snapshot
Impacts of different expressions of PA-X protein on 2009 pandemic H1N1 virus replication, pathogenicity and host immune responses
inferredcites →https://doi.org/10.1016/j.virusres.2004.02.028openalex-snapshot
Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments
inferredcites →https://doi.org/10.1016/s0021-9258(18)83694-8openalex-snapshot
Translation Initiation at Non-Aug Triplets in Mammalian Cells
inferredcites →https://doi.org/10.1016/s0264-410x(02)00268-2openalex-snapshot
Eight-plasmid system for rapid generation of influenza virus vaccines
inferredcites →https://doi.org/10.1016/s1473-3099(12)70121-4openalex-snapshot
Estimated global mortality associated with the first 12 months of 2009 pandemic influenza A H1N1 virus circulation: a modelling study
inferredcites →https://doi.org/10.1038/nature05379openalex-snapshot
The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA
inferredcites →https://doi.org/10.1038/nrmicro3367openalex-snapshot
At the centre: influenza A virus ribonucleoproteins
inferredcites →https://doi.org/10.1038/srep08262openalex-snapshot
The contribution of PA-X to the virulence of pandemic 2009 H1N1 and highly pathogenic H5N1 avian influenza viruses
inferredcites →https://doi.org/10.1038/srep15055openalex-snapshot
Structure of importin-α bound to a non-classical nuclear localization signal of the influenza A virus nucleoprotein
inferredcites →https://doi.org/10.1093/jac/dkq486openalex-snapshot
Pandemic H1N1 2009 influenza virus with the H275Y oseltamivir resistance neuraminidase mutation shows a small compromise in enzyme activity and viral fitness
inferredcites →https://doi.org/10.1093/nar/17.8.3129openalex-snapshot
On the fidelity of mRNA translation in the nuclease-treated rabbit reticulocyte lysate system
inferredcites →https://doi.org/10.1093/nar/gkm087openalex-snapshot
Codon conservation in the influenza A virus genome defines RNA packaging signals
inferredcites →https://doi.org/10.1093/nar/gkr487openalex-snapshot
Overlapping signals for translational regulation and packaging of influenza A virus segment 2
inferredcites →https://doi.org/10.1093/nar/gkx1114openalex-snapshot
Complete motif analysis of sequence requirements for translation initiation at non-AUG start codons
inferredcites →https://doi.org/10.1096/fj.08-112110openalex-snapshot
Structure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design
inferredcites →https://doi.org/10.1099/vir.0.017608-0openalex-snapshot
Genome packaging in influenza A virus
inferredcites →https://doi.org/10.1099/vir.0.82809-0openalex-snapshot
Identification of the domains of the influenza A virus M1 matrix protein required for NP binding, oligomerization and incorporation into virions
inferredcites →https://doi.org/10.1111/j.1600-0854.2004.00237.xopenalex-snapshot
Lipid Raft‐Dependent Targeting of the Influenza A Virus Nucleoprotein to the Apical Plasma Membrane
inferredcites →https://doi.org/10.1111/j.1600-0854.2005.00263.xopenalex-snapshot
An Unconventional NLS is Critical for the Nuclear Import of the Influenza A Virus Nucleoprotein and Ribonucleoprotein
inferredcites →https://doi.org/10.1111/j.1600-0854.2006.00507.xopenalex-snapshot
Nuclear Export of Influenza A Virus mRNAs Requires Ongoing RNA Polymerase II Activity
inferredcites →https://doi.org/10.1126/science.1176225openalex-snapshot
Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans
inferredcites →https://doi.org/10.1126/science.1222213openalex-snapshot
An Overlapping Protein-Coding Region in Influenza A Virus Segment 3 Modulates the Host Response
inferredcites →https://doi.org/10.1128/jvi.00015-15openalex-snapshot
Phosphorylation Controls the Nuclear-Cytoplasmic Shuttling of Influenza A Virus Nucleoprotein
inferredcites →https://doi.org/10.1128/jvi.00022-18openalex-snapshot
NS1 Protein of 2009 Pandemic Influenza A Virus Inhibits Porcine NLRP3 Inflammasome-Mediated Interleukin-1 Beta Production by Suppressing ASC Ubiquitination
inferredcites →https://doi.org/10.1128/jvi.00081-10openalex-snapshot
Inefficient Control of Host Gene Expression by the 2009 Pandemic H1N1 Influenza A Virus NS1 Protein
inferredcites →https://doi.org/10.1128/jvi.00134-12openalex-snapshot
Restored PB1-F2 in the 2009 Pandemic H1N1 Influenza Virus Has Minimal Effects in Swine
inferredcites →https://doi.org/10.1128/jvi.00509-14openalex-snapshot
Sumoylation of Influenza A Virus Nucleoprotein Is Essential for Intracellular Trafficking and Virus Growth
inferredcites →https://doi.org/10.1128/jvi.00826-09openalex-snapshot
A Complicated Message: Identification of a Novel PB1-Related Protein Translated from Influenza A Virus Segment 2 mRNA
inferredcites →https://doi.org/10.1128/jvi.00978-07openalex-snapshot
A Naturally Occurring Deletion in Its NS Gene Contributes to the Attenuation of an H5N1 Swine Influenza Virus in Chickens
inferredcites →https://doi.org/10.1128/jvi.01542-14openalex-snapshot
The N Terminus of the Influenza B Virus Nucleoprotein Is Essential for Virus Viability, Nuclear Localization, and Optimal Transcription and Replication of the Viral Genome
inferredcites →https://doi.org/10.1128/jvi.01634-08openalex-snapshot
Mutational Analysis of cis -Acting RNA Signals in Segment 7 of Influenza A Virus
inferredcites →https://doi.org/10.1128/jvi.01677-12openalex-snapshot
Evolutionary Conservation of the PA-X Open Reading Frame in Segment 3 of Influenza A Virus
inferredcites →https://doi.org/10.1128/jvi.02005-07openalex-snapshot
The Influenza Virus Resource at the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1128/jvi.02717-09openalex-snapshot
PB1-F2 Expression by the 2009 Pandemic H1N1 Influenza Virus Has Minimal Impact on Virulence in Animal Models
inferredcites →https://doi.org/10.1128/jvi.03098-13openalex-snapshot
Characterization of the Noncoding Regions of the 1918 Influenza A H1N1 Virus
inferredcites →https://doi.org/10.1128/jvi.06362-11openalex-snapshot
Identification of RNA Helicase A as a Cellular Factor That Interacts with Influenza A Virus NS1 Protein and Its Role in the Virus Life Cycle
inferredcites →https://doi.org/10.1128/jvi.64.11.5669-5673.1990openalex-snapshot
Determination of influenza virus proteins required for genome replication
inferredcites →https://doi.org/10.1128/jvi.70.6.3385-3391.1996openalex-snapshot
Serine 3 is critical for phosphorylation at the N-terminal end of the nucleoprotein of influenza virus A/Victoria/3/75
inferredcites →https://doi.org/10.1128/jvi.71.12.9690-9700.1997openalex-snapshot
Nuclear import and export of influenza virus nucleoprotein
inferredcites →https://doi.org/10.1128/jvi.71.3.1850-1856.1997openalex-snapshot
The NPI-1/NPI-3 (karyopherin alpha) binding site on the influenza a virus nucleoprotein NP is a nonconventional nuclear localization signal
inferredcites →https://doi.org/10.1128/mbio.00067-10openalex-snapshot
The PB2-E627K Mutation Attenuates Viruses Containing the 2009 H1N1 Influenza Pandemic Polymerase
inferredcites →https://doi.org/10.11613/bm.2011.029openalex-snapshot
Multiple comparison analysis testing in ANOVA
inferredcites →https://doi.org/10.1177/0300985812439724openalex-snapshot
Kinetics of Lung Lesion Development and Pro-Inflammatory Cytokine Response in Pigs With Vaccine-Associated Enhanced Respiratory Disease Induced by Challenge With Pandemic (2009) A/H1N1 Influenza Virus
inferredcites →https://doi.org/10.1177/030098589503200606openalex-snapshot
Comparison of the Pathogenicity of Two US Porcine Reproductive and Respiratory Syndrome Virus Isolates with that of the Lelystad Virus
inferredcites →https://doi.org/10.1186/1471-2121-9-22openalex-snapshot
Application of bioinformatics-coupled experimental analysis reveals a new transport-competent nuclear localization signal in the nucleoprotein of Influenza A virus strain
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/1743-422x-4-49openalex-snapshot
Nuclear import of influenza A viral ribonucleoprotein complexes is mediated by two nuclear localization sequences on viral nucleoprotein
inferredcites →https://doi.org/10.1186/preaccept-1527879917118273openalex-snapshot
Heterogeneous pathological outcomes after experimental pH1N1 influenza infection in ferrets correlate with viral replication and host immune responses in the lung
inferredcites →https://doi.org/10.1371/journal.pmed.1001558openalex-snapshot
Global Mortality Estimates for the 2009 Influenza Pandemic from the GLaMOR Project: A Modeling Study
inferredcites →https://doi.org/10.1371/journal.pone.0026175openalex-snapshot
Effects of the C-Terminal Truncation in NS1 Protein of the 2009 Pandemic H1N1 Influenza Virus on Host Gene Expression
inferredcites →https://doi.org/10.1371/journal.ppat.1002993openalex-snapshot
Mapping the Phosphoproteome of Influenza A and B Viruses by Mass Spectrometry
inferredcites →https://doi.org/10.3390/tropicalmed4010041openalex-snapshot
Sowing the Seeds of a Pandemic? Mammalian Pathogenicity and Transmissibility of H1 Variant Influenza Viruses from the Swine Reservoir
inferredcites →https://doi.org/10.4049/jimmunol.1502632openalex-snapshot
Aerosol Delivery of a Candidate Universal Influenza Vaccine Reduces Viral Load in Pigs Challenged with Pandemic H1N1 Virus
inferredcites →https://doi.org/10.4049/jimmunol.164.12.6166openalex-snapshot
M-1/M-2 Macrophages and the Th1/Th2 Paradigm
inferredcites →https://doi.org/10.4161/viru.2.6.18148openalex-snapshot
2009 pandemic H1N1 influenza A virus strains display differential pathogenicity in C57BL/6J but not BALB/c mice
inferredcites →https://doi.org/10.7554/elife.12735openalex-snapshot
Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cell.2020.05.035openalex-snapshot
Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection
inferred← citeshttps://doi.org/10.1038/s41586-021-03511-5openalex-snapshot
Unconventional viral gene expression mechanisms as therapeutic targets
inferred← citeshttps://doi.org/10.1093/ve/veab044openalex-snapshot
Differential disease severity and whole-genome sequence analysis for human influenza A/H1N1pdm virus in 2015–2016 influenza season
inferred← citeshttps://doi.org/10.1101/795815openalex-snapshot
Upstream translation initiation expands the coding capacity of segmented negative-strand RNA viruses
inferred← citeshttps://doi.org/10.1101/cshperspect.a038380openalex-snapshot
Accessory Gene Products of Influenza A Virus
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