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Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

https://doi.org/10.1101/744540
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.ajhg.2018.07.011openalex-snapshot
Characterization of a Human-Specific Tandem Repeat Associated with Bipolar Disorder and Schizophrenia
inferredcites →https://doi.org/10.1016/j.bpj.2018.03.011openalex-snapshot
Formation of Chromatin Subcompartments by Phase Separation
inferredcites →https://doi.org/10.1016/j.cell.2011.01.024openalex-snapshot
Functional and Mechanistic Diversity of Distal Transcription Enhancers
inferredcites →https://doi.org/10.1016/j.cell.2013.02.001openalex-snapshot
Genome Architecture: Domain Organization of Interphase Chromosomes
inferredcites →https://doi.org/10.1016/j.cell.2013.04.053openalex-snapshot
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2016.02.007openalex-snapshot
The 3D Genome as Moderator of Chromosomal Communication
inferredcites →https://doi.org/10.1016/j.cell.2016.09.037openalex-snapshot
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
inferredcites →https://doi.org/10.1016/j.cell.2017.02.007openalex-snapshot
A Phase Separation Model for Transcriptional Control
inferredcites →https://doi.org/10.1016/j.cell.2018.07.047openalex-snapshot
Transcription Elongation Can Affect Genome 3D Structure
inferredcites →https://doi.org/10.1016/j.celrep.2014.10.015openalex-snapshot
A Role for Noncoding Variation in Schizophrenia
inferredcites →https://doi.org/10.1016/j.stem.2016.01.007openalex-snapshot
Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
inferredcites →https://doi.org/10.1016/j.stem.2016.04.004openalex-snapshot
Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming
inferredcites →https://doi.org/10.1016/j.stem.2017.09.006openalex-snapshot
CRISPR/Cas9-Based Engineering of the Epigenome
inferredcites →https://doi.org/10.1016/j.tig.2015.11.001openalex-snapshot
H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes
inferredcites →https://doi.org/10.1016/j.ymeth.2012.05.001openalex-snapshot
Hi–C: A comprehensive technique to capture the conformation of genomes
inferredcites →https://doi.org/10.1017/thg.2013.12openalex-snapshot
Genome-Wide Association Study of Inattention and Hyperactivity–Impulsivity Measured as Quantitative Traits
inferredcites →https://doi.org/10.1038/cr.2016.137openalex-snapshot
Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
inferredcites →https://doi.org/10.1038/mp.2011.13openalex-snapshot
Integration-free induced pluripotent stem cells derived from schizophrenia patients with a DISC1 mutation
inferredcites →https://doi.org/10.1038/mp.2017.133openalex-snapshot
Cross-disorder risk gene CACNA1C differentially modulates susceptibility to psychiatric disorders during development and adulthood
inferredcites →https://doi.org/10.1038/nature09380openalex-snapshot
Mediator and cohesin connect gene expression and chromatin architecture
inferredcites →https://doi.org/10.1038/nature11049openalex-snapshot
Spatial partitioning of the regulatory landscape of the X-inactivation centre
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature12420openalex-snapshot
The pluripotent genome in three dimensions is shaped around pluripotency factors
inferredcites →https://doi.org/10.1038/nature12644openalex-snapshot
A high-resolution map of the three-dimensional chromatin interactome in human cells
inferredcites →https://doi.org/10.1038/nature12716openalex-snapshot
Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
inferredcites →https://doi.org/10.1038/nature13716openalex-snapshot
Synaptic dysregulation in a human iPS cell model of mental disorders
inferredcites →https://doi.org/10.1038/nature14222openalex-snapshot
Chromatin architecture reorganization during stem cell differentiation
inferredcites →https://doi.org/10.1038/nature19847openalex-snapshot
Chromosome conformation elucidates regulatory relationships in developing human brain
inferredcites →https://doi.org/10.1038/nature24277openalex-snapshot
Genetic effects on gene expression across human tissues
inferredcites →https://doi.org/10.1038/nbt.2728openalex-snapshot
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
inferredcites →https://doi.org/10.1038/ng.3286openalex-snapshot
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
inferredcites →https://doi.org/10.1038/ng.3393openalex-snapshot
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
inferredcites →https://doi.org/10.1038/ng.3623openalex-snapshot
Identification of 15 genetic loci associated with risk of major depression in individuals of European descent
inferredcites →https://doi.org/10.1038/ng.3963openalex-snapshot
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
inferredcites →https://doi.org/10.1038/ng.947openalex-snapshot
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
inferredcites →https://doi.org/10.1038/ng1896openalex-snapshot
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C)
inferredcites →https://doi.org/10.1038/nmeth.2148openalex-snapshot
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
inferredcites →https://doi.org/10.1038/nmeth.4325openalex-snapshot
Comparison of computational methods for Hi-C data analysis
inferredcites →https://doi.org/10.1038/s41588-018-0090-3openalex-snapshot
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression
inferredcites →https://doi.org/10.1038/s41588-021-00913-zopenalex-snapshot
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression
inferredcites →https://doi.org/10.1093/nar/gkq955openalex-snapshot
Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
inferredcites →https://doi.org/10.1093/nar/gkw1133openalex-snapshot
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)
inferredcites →https://doi.org/10.1093/schbul/sby096openalex-snapshot
CACNA1C: Association With Psychiatric Disorders, Behavior, and Neurogenesis
inferredcites →https://doi.org/10.1101/gad.281964.116openalex-snapshot
The second decade of 3C technologies: detailed insights into nuclear organization
inferredcites →https://doi.org/10.1101/gr.168872.113openalex-snapshot
Widespread contribution of transposable elements to the innovation of gene regulatory networks
inferredcites →https://doi.org/10.1101/gr.185272.114openalex-snapshot
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1207194openalex-snapshot
The Dynamic Architecture of Hox Gene Clusters
inferredcites →https://doi.org/10.1126/science.1232542openalex-snapshot
Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
inferredcites →https://doi.org/10.1126/science.1262088openalex-snapshot
CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
inferredcites →https://doi.org/10.1126/science.aat4311openalex-snapshot
Neuron-specific signatures in the chromosomal connectome associated with schizophrenia risk
inferredcites →https://doi.org/10.1126/science.aat8464openalex-snapshot
Comprehensive functional genomic resource and integrative model for the human brain
inferredcites →https://doi.org/10.1371/journal.pone.0157086openalex-snapshot
Functional Characterization of Schizophrenia-Associated Variation in CACNA1C

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41568-020-0270-1openalex-snapshot
Emerging themes in cohesin cancer biology
inferred← citeshttps://doi.org/10.18699/bgrs/sb-2022-056openalex-snapshot
Maps of chromatin conformation in the cerebral cortex
inferred← citeshttps://doi.org/10.18699/sbb-2022-056openalex-snapshot
Maps of chromatin conformation in the cerebral cortex
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