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Complex symbiont-pathogen interactions inhibit intestinal repair

https://doi.org/10.1101/746305
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9780470151808.sc02f02s27openalex-snapshot
RNA Expression Profiling from FACS‐Isolated Cells of the Drosophila Intestine
inferredcites →https://doi.org/10.1016/j.cell.2006.08.043openalex-snapshot
Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection
inferredcites →https://doi.org/10.1016/j.cell.2009.05.014openalex-snapshot
Cytokine/Jak/Stat Signaling Mediates Regeneration and Homeostasis in the Drosophila Midgut
inferredcites →https://doi.org/10.1016/j.celrep.2015.06.009openalex-snapshot
Regional Cell-Specific Transcriptome Mapping Reveals Regulatory Complexity in the Adult Drosophila Midgut
inferredcites →https://doi.org/10.1016/j.chom.2008.09.009openalex-snapshot
Specific Microbiota Direct the Differentiation of IL-17-Producing T-Helper Cells in the Mucosa of the Small Intestine
inferredcites →https://doi.org/10.1016/j.chom.2009.01.003openalex-snapshot
Drosophila Intestinal Response to Bacterial Infection: Activation of Host Defense and Stem Cell Proliferation
inferredcites →https://doi.org/10.1016/j.chom.2012.06.002openalex-snapshot
Peptidoglycan Sensing by the Receptor PGRP-LE in the Drosophila Gut Induces Immune Responses to Infectious Bacteria and Tolerance to Microbiota
inferredcites →https://doi.org/10.1016/j.dci.2016.02.008openalex-snapshot
From pathogens to microbiota: How Drosophila intestinal stem cells react to gut microbes
inferredcites →https://doi.org/10.1016/j.ejim.2018.02.006openalex-snapshot
The role of gut microbiota in Clostridium difficile infection
inferredcites →https://doi.org/10.1016/j.immuni.2006.02.012openalex-snapshot
The Drosophila Amidase PGRP-LB Modulates the Immune Response to Bacterial Infection
inferredcites →https://doi.org/10.1016/j.immuni.2018.04.010openalex-snapshot
Cell-Specific Imd-NF-κB Responses Enable Simultaneous Antibacterial Immunity and Intestinal Epithelial Cell Shedding upon Bacterial Infection
inferredcites →https://doi.org/10.1016/j.mib.2008.01.006openalex-snapshot
Type VI secretion: a beginner's guide
inferredcites →https://doi.org/10.1016/j.stem.2008.10.016openalex-snapshot
Tissue Damage-Induced Intestinal Stem Cell Division in Drosophila
inferredcites →https://doi.org/10.1016/j.stem.2010.11.026openalex-snapshot
EGFR/Ras/MAPK Signaling Mediates Adult Midgut Epithelial Homeostasis and Regeneration in Drosophila
inferredcites →https://doi.org/10.1016/j.tim.2016.12.003openalex-snapshot
Rules of Engagement: The Type VI Secretion System in Vibrio cholerae
inferredcites →https://doi.org/10.1016/j.ydbio.2014.12.017openalex-snapshot
Dpp/Gbb signaling is required for normal intestinal regeneration during infection
inferredcites →https://doi.org/10.1016/s1074-7613(00)00072-8openalex-snapshot
Tissue-Specific Inducible Expression of Antimicrobial Peptide Genes in Drosophila Surface Epithelia
inferredcites →https://doi.org/10.1038/emboj.2013.224openalex-snapshot
Symbiotic lactobacilli stimulate gut epithelial proliferation via Nox‐mediated generation of reactive oxygen species
inferredcites →https://doi.org/10.1038/nature04333openalex-snapshot
The adult Drosophila posterior midgut is maintained by pluripotent stem cells
inferredcites →https://doi.org/10.1038/nature04371openalex-snapshot
Evidence that stem cells reside in the adult Drosophila midgut epithelium
inferredcites →https://doi.org/10.1038/nature07450openalex-snapshot
Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis
inferredcites →https://doi.org/10.1038/nature10244openalex-snapshot
Type VI secretion delivers bacteriolytic effectors to target cells
inferredcites →https://doi.org/10.1038/nature12074openalex-snapshot
Diverse type VI secretion phospholipases are functionally plastic antibacterial effectors
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/s41564-017-0065-7openalex-snapshot
Activation of Vibrio cholerae quorum sensing promotes survival of an arthropod host
inferredcites →https://doi.org/10.1038/s41684-018-0065-0openalex-snapshot
The Drosophila model for microbiome research
inferredcites →https://doi.org/10.1038/sj.emboj.7601233openalex-snapshot
An essential complementary role of NF‐κB pathway to microbicidal oxidants in Drosophila gut immunity
inferredcites →https://doi.org/10.1073/pnas.0510322103openalex-snapshot
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system
inferredcites →https://doi.org/10.1073/pnas.0706532104openalex-snapshot
Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin
inferredcites →https://doi.org/10.1073/pnas.0915156107openalex-snapshot
In vivo actin cross-linking induced by Vibrio cholerae type VI secretion system is associated with intestinal inflammation
inferredcites →https://doi.org/10.1073/pnas.1608858113openalex-snapshot
Salmonella Typhimurium utilizes a T6SS-mediated antibacterial weapon to establish in the host gut
inferredcites →https://doi.org/10.1073/pnas.1802165115openalex-snapshot
Commensal pathogen competition impacts host viability
inferredcites →https://doi.org/10.1073/pnas.1809349115openalex-snapshot
Microbiome interactions shape host fitness
inferredcites →https://doi.org/10.1083/jcb.201302049openalex-snapshot
Injury-induced BMP signaling negatively regulates Drosophila midgut homeostasis
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/nar/gks042openalex-snapshot
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
inferredcites →https://doi.org/10.1093/nar/gkt214openalex-snapshot
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
inferredcites →https://doi.org/10.1101/721662openalex-snapshot
Immune Regulation of Intestinal Stem Cell Proliferation and Differentiation in Drosophila
inferredcites →https://doi.org/10.1101/gad.1827009openalex-snapshot
Invasive and indigenous microbiota impact intestinal stem cell activity through multiple pathways in Drosophila
inferredcites →https://doi.org/10.1101/gad.9.21.2609openalex-snapshot
Suppressor of hairless directly activates transcription of enhancer of split complex genes in response to Notch receptor activity.
inferredcites →https://doi.org/10.1111/mec.14413openalex-snapshot
How gut transcriptional function of Drosophila melanogaster varies with the presence and composition of the gut microbiota
inferredcites →https://doi.org/10.1126/science.1117311openalex-snapshot
A Direct Role for Dual Oxidase in Drosophila Gut Immunity
inferredcites →https://doi.org/10.1126/science.1128393openalex-snapshot
A Virulence Locus of Pseudomonas aeruginosa Encodes a Protein Secretion Apparatus
inferredcites →https://doi.org/10.1126/science.1136606openalex-snapshot
Multipotent Drosophila Intestinal Stem Cells Specify Daughter Cell Fates by Differential Notch Signaling
inferredcites →https://doi.org/10.1126/science.1149357openalex-snapshot
Innate Immune Homeostasis by the Homeobox Gene Caudal and Commensal-Gut Mutualism in Drosophila
inferredcites →https://doi.org/10.1126/science.1173164openalex-snapshot
Genome-Wide RNAi Screen Identifies Genes Involved in Intestinal Pathogenic Bacterial Infection
inferredcites →https://doi.org/10.1126/science.1212782openalex-snapshot
Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling
inferredcites →https://doi.org/10.1126/science.aap8775openalex-snapshot
Antagonism toward the intestinal microbiota and its effect on Vibrio cholerae virulence
inferredcites →https://doi.org/10.1128/iai.01266-10openalex-snapshot
Vibrio cholerae Requires the Type VI Secretion System Virulence Factor VasX To Kill Dictyostelium discoideum
inferredcites →https://doi.org/10.1128/mbio.01114-18openalex-snapshot
Monoassociation with Lactobacillus plantarum Disrupts Intestinal Homeostasis in Adult Drosophila melanogaster
inferredcites →https://doi.org/10.1128/mbio.01117-14openalex-snapshot
Microbiota-Induced Changes in Drosophila melanogaster Host Gene Expression and Gut Morphology
inferredcites →https://doi.org/10.1186/1471-2105-10-1openalex-snapshot
Regularized gene selection in cancer microarray meta-analysis
inferredcites →https://doi.org/10.1186/1471-2105-10-48openalex-snapshot
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
inferredcites →https://doi.org/10.1186/1741-7007-8-1openalex-snapshot
THOC5/FMIP, an mRNA export TREX complex protein, is essential for hematopoietic primitive cell survival in vivo
inferredcites →https://doi.org/10.1186/1741-7007-8-152openalex-snapshot
DrosophilaEGFR pathway coordinates stem cell proliferation and gut remodeling following infection
inferredcites →https://doi.org/10.1186/s13059-015-0614-4openalex-snapshot
Site-specific programming of the host epithelial transcriptome by the gut microbiota
inferredcites →https://doi.org/10.1242/bio.017673openalex-snapshot
Comparative evaluation of the genomes of three common Drosophila -associated bacteria
inferredcites →https://doi.org/10.1371/journal.pone.0023876openalex-snapshot
Genetic Analysis of Anti-Amoebae and Anti-Bacterial Activities of the Type VI Secretion System in Vibrio cholerae
inferredcites →https://doi.org/10.1371/journal.pone.0042842openalex-snapshot
Campylobacter jejuni Type VI Secretion System: Roles in Adaptation to Deoxycholic Acid, Host Cell Adherence, Invasion, and In Vivo Colonization
inferredcites →https://doi.org/10.1371/journal.pone.0046966openalex-snapshot
Succession in the Gut Microbiome following Antibiotic and Antibody Therapies for Clostridium difficile
inferredcites →https://doi.org/10.1371/journal.pone.0138265openalex-snapshot
Differential Role of the T6SS in Acinetobacter baumannii Virulence
inferredcites →https://doi.org/10.1371/journal.ppat.0010008openalex-snapshot
Vibrio cholerae Infection of Drosophila melanogaster Mimics the Human Disease Cholera
inferredcites →https://doi.org/10.1371/journal.ppat.1001068openalex-snapshot
Burkholderia Type VI Secretion Systems Have Distinct Roles in Eukaryotic and Bacterial Cell Interactions
inferredcites →https://doi.org/10.1371/journal.ppat.1006847openalex-snapshot
Comparative transcriptomics reveals CrebA as a novel regulator of infection tolerance in D. melanogaster
inferredcites →https://doi.org/10.1534/genetics.118.300224openalex-snapshot
Anatomy and Physiology of the Digestive Tract of Drosophila melanogaster
inferredcites →https://doi.org/10.3391/mbi.2014.5.1.01openalex-snapshot
Tackling Invasive Alien Species in Europe: the top 20 issues
inferredcites →https://doi.org/10.3791/54219openalex-snapshot
Rearing the Fruit Fly Drosophila melanogaster Under Axenic and Gnotobiotic Conditions
inferredcites →https://doi.org/10.4049/jimmunol.1103301openalex-snapshot
The Drosophila Protein Mustard Tailors the Innate Immune Response Activated by the Immune Deficiency Pathway
inferredcites →https://doi.org/10.4103/2319-4170.158620openalex-snapshot
Studying host-microbiota mutualism in Drosophila: Harnessing the power of gnotobiotic flies
inferredcites →https://doi.org/10.4161/gmic.19896openalex-snapshot
Gut-associated microbes of Drosophila melanogaster
inferredcites →https://doi.org/10.4161/jkst.25353openalex-snapshot
TheDrosophilaJAK-STAT pathway
inferredcites →https://doi.org/10.7554/elife.01857openalex-snapshot
Intestinal epithelium-derived BMP controls stem cell self-renewal in Drosophila adult midgut

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fimmu.2019.03128openalex-snapshot
Host-Microbe-Pathogen Interactions: A Review of Vibrio cholerae Pathogenesis in Drosophila
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