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Manner of death and demographic effects on microbial community composition in organs of the human cadaver

https://doi.org/10.1101/752576
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
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Data Analysis
inferredcites →https://doi.org/10.1007/s00414-013-0872-1openalex-snapshot
The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing
inferredcites →https://doi.org/10.1007/s12024-018-0061-0openalex-snapshot
An interdisciplinary review of the thanatomicrobiome in human decomposition
inferredcites →https://doi.org/10.1016/j.forsciint.2016.03.019openalex-snapshot
Fluorescently labeled bacteria provide insight on post-mortem microbial transmigration
inferredcites →https://doi.org/10.1016/j.fsigss.2017.09.210openalex-snapshot
Microbial forensic analysis of human-associated bacteria inhabiting hand surface
inferredcites →https://doi.org/10.1016/j.mib.2008.02.007openalex-snapshot
The mechanisms of carbon catabolite repression in bacteria
inferredcites →https://doi.org/10.1016/s0379-0738(01)00411-xopenalex-snapshot
Factors affecting decomposition and Diptera colonization
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/nature17626openalex-snapshot
The evolution of cooperation within the gut microbiota
inferredcites →https://doi.org/10.1038/nature18850openalex-snapshot
Microbiome-wide association studies link dynamic microbial consortia to disease
inferredcites →https://doi.org/10.1038/nm.4517openalex-snapshot
Current understanding of the human microbiome
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/srep29598openalex-snapshot
Human Thanatomicrobiome Succession and Time Since Death
inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
inferredcites →https://doi.org/10.1073/pnas.1000162107openalex-snapshot
Forensic identification using skin bacterial communities
inferredcites →https://doi.org/10.1111/1556-4029.12124openalex-snapshot
Evaluation of Postmortem Bacterial Migration Using Culturing and Real‐Time Quantitative PCR
inferredcites →https://doi.org/10.1111/1556-4029.12155openalex-snapshot
The Interest of Postmortem Bacteriology in Putrefied Bodies
inferredcites →https://doi.org/10.1111/1556-4029.12828openalex-snapshot
Estimating Time Since Death from Postmortem Human Gut Microbial Communities
inferredcites →https://doi.org/10.1111/1556-4029.13949openalex-snapshot
Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue
inferredcites →https://doi.org/10.1126/science.aad2646openalex-snapshot
Microbial community assembly and metabolic function during mammalian corpse decomposition
inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
inferredcites →https://doi.org/10.1128/aem.01672-17openalex-snapshot
Forensic Human Identification Using Skin Microbiomes
inferredcites →https://doi.org/10.1128/aem.02762-08openalex-snapshot
Mesophilic and Psychrotrophic Bacteria from Meat and Their Spoilage Potential In Vitro and in Beef
inferredcites →https://doi.org/10.1128/msystems.00191-16openalex-snapshot
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
inferredcites →https://doi.org/10.1186/s40168-015-0082-9openalex-snapshot
Forensic analysis of the microbiome of phones and shoes
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0077733openalex-snapshot
The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition
inferredcites →https://doi.org/10.1371/journal.pone.0130201openalex-snapshot
Functional and Structural Succession of Soil Microbial Communities below Decomposing Human Cadavers
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3389/fmicb.2017.02096openalex-snapshot
Cadaver Thanatomicrobiome Signatures: The Ubiquitous Nature of Clostridium Species in Human Decomposition
inferredcites →https://doi.org/10.4315/0362-028x-42.2.144openalex-snapshot
Growth of Clostridium perfringens in Three Different Beef Media and Fluid Thioglycollate Medium at Static and Constantly Rising Temperatures
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics
inferredcites →https://doi.org/10.7717/peerj.3437openalex-snapshot
Postmortem succession of gut microbial communities in deceased human subjects

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00253-020-10922-3openalex-snapshot
Thanatomicrobiome and epinecrotic community signatures for estimation of post-mortem time interval in human cadaver
inferred← citeshttps://doi.org/10.1007/s00414-022-02919-6openalex-snapshot
Optimization of DNA extraction and sampling methods for successful forensic microbiome analyses of the skin and saliva
inferred← citeshttps://doi.org/10.1016/j.jflm.2023.102560openalex-snapshot
Applications of microbiology to different forensic scenarios – A narrative review
inferred← citeshttps://doi.org/10.1016/j.mimet.2025.107300openalex-snapshot
Forensic application of metagenomics: Methods and future directions
inferred← citeshttps://doi.org/10.1111/1556-4029.70108openalex-snapshot
Microbial succession patterns for postmortem interval estimation in decomposed mouse cadavers: A comparative study of mechanical asphyxia and hemorrhagic shock
inferred← citeshttps://doi.org/10.17116/sudmed20226503149openalex-snapshot
Estimation of time since death with the postmortem microbiome: a modern view and approaches to solving the problem
inferred← citeshttps://doi.org/10.17116/sudmed20246705155openalex-snapshot
Use of microbiological data for the purposes of forensic medical examination
inferred← citeshttps://doi.org/10.3389/fmicb.2020.608101openalex-snapshot
Forensic Applications of Microbiomics: A Review
inferred← citeshttps://doi.org/10.38124/ijisrt/ijisrt24jun963openalex-snapshot
A Review of Forensic Microbes in Crime Investigations
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