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A simple method to quantify protein abundances from one thousand cells

https://doi.org/10.1101/753582
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/anie.201308139openalex-snapshot
Ultrasensitive and Fast Bottom‐up Analysis of Femtogram Amounts of Complex Proteome Digests
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Single‐Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16‐Cell Frog (Xenopus) Embryo
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ggplot2: Elegant Graphics for Data Analysis
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Purification of Fluorescent Labeled Cells from Dissociated Ciona Embryos
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Characterization of the mouse gene encoding the neuronal intermediate filament protein α-internexin
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The NGF-inducible SCG10 mRNA encodes a novel membrane-bound protein present in growth cones and abundant in developing neurons
inferredcites →https://doi.org/10.1016/j.devcel.2014.04.001openalex-snapshot
Collier/OLF/EBF-Dependent Transcriptional Dynamics Control Pharyngeal Muscle Specification from Primed Cardiopharyngeal Progenitors
inferredcites →https://doi.org/10.1016/j.stem.2016.11.006openalex-snapshot
A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells
inferredcites →https://doi.org/10.1021/ac9023022openalex-snapshot
Development of Mass Spectrometry-Based Shotgun Method for Proteome Analysis of 500 to 5000 Cancer Cells
inferredcites →https://doi.org/10.1021/acs.analchem.6b00631openalex-snapshot
Simple and Integrated Spintip-Based Technology Applied for Deep Proteome Profiling
inferredcites →https://doi.org/10.1021/acs.jproteome.7b00433openalex-snapshot
Evaluation of FASP, SP3, and iST Protocols for Proteomic Sample Preparation in the Low Microgram Range
inferredcites →https://doi.org/10.1021/pr050160fopenalex-snapshot
Development and Evaluation of a Micro- and Nanoscale Proteomic Sample Preparation Method
inferredcites →https://doi.org/10.1038/nature10098openalex-snapshot
Global quantification of mammalian gene expression control
inferredcites →https://doi.org/10.1038/nmeth.2834openalex-snapshot
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
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The Perseus computational platform for comprehensive analysis of (prote)omics data
inferredcites →https://doi.org/10.1038/nmeth.4380openalex-snapshot
Simultaneous epitope and transcriptome measurement in single cells
inferredcites →https://doi.org/10.1038/nn.3467openalex-snapshot
Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity
inferredcites →https://doi.org/10.1038/nprot.2016.136openalex-snapshot
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
inferredcites →https://doi.org/10.1038/nrn2212openalex-snapshot
Retinoic acid in the development, regeneration and maintenance of the nervous system
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Single-cell mass cytometry and transcriptome profiling reveal the impact of graphene on human immune cells
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Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells
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A single-cell transcriptional roadmap for cardiopharyngeal fate diversification
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A dream of single-cell proteomics
inferredcites →https://doi.org/10.1039/c5mb00310eopenalex-snapshot
Next-generation analysis of gene expression regulation – comparing the roles of synthesis and degradation
inferredcites →https://doi.org/10.1074/mcp.m114.045724openalex-snapshot
An Integrated Platform for Isolation, Processing, and Mass Spectrometry-based Proteomic Profiling of Rare Cells in Whole Blood*
inferredcites →https://doi.org/10.1074/mcp.ra118.001259openalex-snapshot
Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells*
inferredcites →https://doi.org/10.1080/14789450.2018.1537787openalex-snapshot
Nanoproteomics comes of age
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/nar/gks042openalex-snapshot
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
inferredcites →https://doi.org/10.1093/nar/gky1038openalex-snapshot
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
inferredcites →https://doi.org/10.1093/nar/gky1106openalex-snapshot
The PRIDE database and related tools and resources in 2019: improving support for quantification data
inferredcites →https://doi.org/10.1101/pdb.prot5349openalex-snapshot
Isolation of Individual Cells and Tissues from Electroporated Sea Squirt (Ciona) Embryos by Fluorescence-Activated Cell Sorting (FACS)
inferredcites →https://doi.org/10.1177/088307380301801205openalex-snapshot
Class III β-Tubulin Isotype: A Key Cytoskeletal Protein at the Crossroads of Developmental Neurobiology and Tumor Neuropathology
inferredcites →https://doi.org/10.1186/s13059-016-1045-6openalex-snapshot
Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction
inferredcites →https://doi.org/10.1186/s13059-018-1547-5openalex-snapshot
SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation
inferredcites →https://doi.org/10.1523/jneurosci.2254-04.2004openalex-snapshot
Microtubule-Associated Protein 1B Controls Directionality of Growth Cone Migration and Axonal Branching in Regeneration of Adult Dorsal Root Ganglia Neurons
inferredcites →https://doi.org/10.15252/msb.20145625openalex-snapshot
Ultrasensitive proteome analysis using paramagnetic bead technology
inferredcites →https://doi.org/10.7554/elife.44423openalex-snapshot
Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00338openalex-snapshot
Addressing Cellular Heterogeneity in Cancer through Precision Proteomics
inferred← citeshttps://doi.org/10.1101/665307openalex-snapshot
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity
inferred← citeshttps://doi.org/10.1186/s13059-021-02267-5openalex-snapshot
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
inferred← citeshttps://doi.org/10.70675/a5426795z7433z497fz9698z63a9efd33839openalex-snapshot
Investigation of the molecular diversity defining muscle stem cell heterogeneity
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