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Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity

https://doi.org/10.1101/665307
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Deep Profiling of Cellular Heterogeneity by Emerging Single‐Cell Proteomic Technologies
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Single-cell protein analysis by mass spectrometry
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Analysis of molecular isotopic structures at high precision and accuracy by Orbitrap mass spectrometry
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Dynamics of ions of intact proteins in the Orbitrap mass analyzer
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The p53–Mdm2 module and the ubiquitin system
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Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos
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High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform
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Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry
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Transformative Opportunities for Single-Cell Proteomics
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DO-MS: Data-Driven Optimization of Mass Spectrometry Methods
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Validation of noise models for single-cell transcriptomics
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The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
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inferredcites →https://doi.org/10.1093/nar/gkx1013openalex-snapshot
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
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Automated sample preparation for high-throughput single-cell proteomics
inferredcites →https://doi.org/10.1101/665307openalex-snapshot
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity
inferredcites →https://doi.org/10.1101/745679openalex-snapshot
Quantitative Single-Cell Proteomics as a Tool to Characterize Cellular Hierarchies
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Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC
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inferredcites →https://doi.org/10.1186/s13059-021-02267-5openalex-snapshot
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inferredcites →https://doi.org/10.1201/b11644-19openalex-snapshot
Spectral Graph Theory
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Post-transcriptional regulation across human tissues
inferredcites →https://doi.org/10.1371/journal.pcbi.1007082openalex-snapshot
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inferredcites →https://doi.org/10.18129/b9.bioc.scpopenalex-snapshot
scp
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inferredcites →https://doi.org/10.5281/zenodo.4339953openalex-snapshot
SlavovLab/SCoPE2: zenodo release 20201218
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A standardized computational framework for the analysis of mass spectrometry-based single-cell proteomics data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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