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Intrinsic base substitution patterns in diverse species reveal links to cancer and metabolism

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471143030.cb2009s64openalex-snapshot
Rapid Depletion of Budding Yeast Proteins via the Fusion of an Auxin‐Inducible Degron (AID)
inferredcites →https://doi.org/10.1007/978-1-4939-7306-4openalex-snapshot
Genome Instability
inferredcites →https://doi.org/10.1007/978-1-4939-7306-4_4openalex-snapshot
Molecular Genetic Characterization of Mutagenesis Using a Highly Sensitive Single-Stranded DNA Reporter System in Budding Yeast
inferredcites →https://doi.org/10.1016/0076-6879(83)01015-0openalex-snapshot
[12] One-step gene disruption in yeast
inferredcites →https://doi.org/10.1016/j.celrep.2012.12.008openalex-snapshot
Deciphering Signatures of Mutational Processes Operative in Human Cancer
inferredcites →https://doi.org/10.1016/j.molcel.2016.11.018openalex-snapshot
Autonomous Metabolic Oscillations Robustly Gate the Early and Late Cell Cycle
inferredcites →https://doi.org/10.1038/nature10413openalex-snapshot
Mouse genomic variation and its effect on phenotypes and gene regulation
inferredcites →https://doi.org/10.1038/nature12477openalex-snapshot
Signatures of mutational processes in human cancer
inferredcites →https://doi.org/10.1038/ng.3378openalex-snapshot
An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
inferredcites →https://doi.org/10.1038/ng.3441openalex-snapshot
Clock-like mutational processes in human somatic cells
inferredcites →https://doi.org/10.1038/ng.3469openalex-snapshot
Timing, rates and spectra of human germline mutation
inferredcites →https://doi.org/10.1038/ng.3557openalex-snapshot
Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/s41586-018-0030-5openalex-snapshot
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
inferredcites →https://doi.org/10.1042/bj0221145openalex-snapshot
The selective fermentation of glucose and fructose by brewer's yeast
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/genetics/68.1.21openalex-snapshot
MUTANTS OF YEAST DEFECTIVE IN MUTATION INDUCED BY ULTRAVIOLET LIGHT
inferredcites →https://doi.org/10.1093/genetics/74.2.267openalex-snapshot
GENETIC CONTROL OF THE CELL DIVISION CYCLE IN YEAST: V. GENETIC ANALYSIS OF cdc MUTANTS
inferredcites →https://doi.org/10.1093/nar/gkw893openalex-snapshot
CeNDR, the Caenorhabditis elegans natural diversity resource
inferredcites →https://doi.org/10.1093/nar/gky961openalex-snapshot
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information
inferredcites →https://doi.org/10.1093/nsr/nwz049openalex-snapshot
Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
inferredcites →https://doi.org/10.1101/312041openalex-snapshot
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
inferredcites →https://doi.org/10.1101/gr.239244.118openalex-snapshot
Maftools: efficient and comprehensive analysis of somatic variants in cancer
inferredcites →https://doi.org/10.1111/1755-0998.12549openalex-snapshot
vcfr : a package to manipulate and visualize variant call format data in R
inferredcites →https://doi.org/10.1126/science.283.5404.1001openalex-snapshot
Efficient Bypass of a Thymine-Thymine Dimer by Yeast DNA Polymerase, Polη
inferredcites →https://doi.org/10.1128/jb.100.1.180-186.1969openalex-snapshot
Acetate Utilization and Macromolecular Synthesis During Sporulation of Yeast
inferredcites →https://doi.org/10.1128/mcb.15.11.6128openalex-snapshot
Single-Stranded DNA Arising at Telomeres in cdc13 Mutants May Constitute a Specific Signal for the RAD9 Checkpoint
inferredcites →https://doi.org/10.1146/annurev.biochem.74.082803.133250openalex-snapshot
EUKARYOTIC TRANSLESION SYNTHESIS DNA POLYMERASES: Specificity of Structure and Function
inferredcites →https://doi.org/10.1186/gb-2009-10-6-r63openalex-snapshot
The conservation and evolutionary modularity of metabolism
inferredcites →https://doi.org/10.1186/s12864-015-1594-1openalex-snapshot
Genomic landscape of rat strain and substrain variation
inferredcites →https://doi.org/10.1186/s13073-018-0539-0openalex-snapshot
MutationalPatterns: comprehensive genome-wide analysis of mutational processes
inferredcites →https://doi.org/10.1371/journal.pgen.1003149openalex-snapshot
Base Damage within Single-Strand DNA Underlies In Vivo Hypermutability Induced by a Ubiquitous Environmental Agent
inferredcites →https://doi.org/10.1534/g3.114.015883openalex-snapshot
Global Diversity Lines–A Five-Continent Reference Panel of SequencedDrosophila melanogasterStrains
inferredcites →https://doi.org/10.18129/b9.bioc.bsgenomeopenalex-snapshot
BSgenome
inferredcites →https://doi.org/10.18129/b9.bioc.genomeinfodbopenalex-snapshot
GenomeInfoDb

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.dnarep.2022.103433openalex-snapshot
The mutational impact of Illudin S on human cells
inferred← citeshttps://doi.org/10.1093/g3journal/jkac238openalex-snapshot
Analyses of mutational patterns induced by formaldehyde and acetaldehyde reveal similarity to a common mutational signature
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