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System-Level Quantification and Phenotyping of Early Embryonic Morphogenesis of Caenorhabditis elegans

https://doi.org/10.1101/776062
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.20175openalex-snapshot
PAR proteins and the establishment of cell polarity duringC. elegans development
inferredcites →https://doi.org/10.1002/jmor.1050960304openalex-snapshot
Observations on the embryology of an aquatic gastrotrich, lepidodermella squammata (dujardin, 1841)
inferredcites →https://doi.org/10.1007/bf00391930openalex-snapshot
Zur fortpflanzung und entwicklung der macrodasyoidea (Gastrotricha)
inferredcites →https://doi.org/10.1016/0012-1606(83)90201-4openalex-snapshot
The embryonic cell lineage of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/0092-8674(94)90238-0openalex-snapshot
The maternal genes apx-1 and glp-1 and establishment of dorsal-ventral polarity in the early C. elegans embryo
inferredcites →https://doi.org/10.1016/j.bpj.2013.09.005openalex-snapshot
Mechanical Cues in the Early Embryogenesis of Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.celrep.2018.12.052openalex-snapshot
Systems Properties and Spatiotemporal Regulation of Cell Position Variability during Embryogenesis
inferredcites →https://doi.org/10.1016/j.cels.2016.07.005openalex-snapshot
Compensatory Cell Movements Confer Robustness to Mechanical Deformation during Embryonic Development
inferredcites →https://doi.org/10.1016/j.cub.2005.07.062openalex-snapshot
The Orientation of Cell Divisions Determines the Shape of Drosophila Organs
inferredcites →https://doi.org/10.1016/j.cub.2006.08.090openalex-snapshot
Wnt/Frizzled Signaling Controls C. elegans Gastrulation by Activating Actomyosin Contractility
inferredcites →https://doi.org/10.1016/j.devcel.2004.10.008openalex-snapshot
Multiple Wnt Signaling Pathways Converge to Orient the Mitotic Spindle in Early C. elegans Embryos
inferredcites →https://doi.org/10.1016/j.devcel.2007.10.007openalex-snapshot
The PAR Proteins: Fundamental Players in Animal Cell Polarization
inferredcites →https://doi.org/10.1016/j.devcel.2009.08.008openalex-snapshot
Latrophilin Signaling Links Anterior-Posterior Tissue Polarity and Oriented Cell Divisions in the C. elegans Embryo
inferredcites →https://doi.org/10.1016/j.devcel.2010.08.014openalex-snapshot
Chiral Forces Organize Left-Right Patterning in C. elegans by Uncoupling Midline and Anteroposterior Axis
inferredcites →https://doi.org/10.1016/j.devcel.2016.01.003openalex-snapshot
Cell Size Determines the Strength of the Spindle Assembly Checkpoint during Embryonic Development
inferredcites →https://doi.org/10.1016/j.devcel.2016.07.025openalex-snapshot
A Transcriptional Lineage of the Early C. elegans Embryo
inferredcites →https://doi.org/10.1016/j.devcel.2018.06.020openalex-snapshot
Combinatorial Contact Cues Specify Cell Division Orientation by Directing Cortical Myosin Flows
inferredcites →https://doi.org/10.1016/j.jtbi.2017.01.026openalex-snapshot
Quantifying the relationship between cell division angle and morphogenesis through computational modeling
inferredcites →https://doi.org/10.1016/j.ydbio.2007.11.015openalex-snapshot
Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.ydbio.2008.02.054openalex-snapshot
Control of cell cycle timing during C. elegans embryogenesis
inferredcites →https://doi.org/10.1016/j.ydbio.2009.06.014openalex-snapshot
Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps
inferredcites →https://doi.org/10.1016/j.ydbio.2011.08.002openalex-snapshot
Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development
inferredcites →https://doi.org/10.1016/j.ydbio.2012.11.034openalex-snapshot
A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress
inferredcites →https://doi.org/10.1016/j.ydbio.2018.12.022openalex-snapshot
Twenty million years of evolution: The embryogenesis of four Caenorhabditis species are indistinguishable despite extensive genome divergence
inferredcites →https://doi.org/10.1016/s0092-8674(00)80530-9openalex-snapshot
Wnt Signaling Polarizes an Early C. elegans Blastomere to Distinguish Endoderm from Mesoderm
inferredcites →https://doi.org/10.1016/s1097-2765(00)80438-4openalex-snapshot
A Conserved Checkpoint Pathway Mediates DNA Damage–Induced Apoptosis and Cell Cycle Arrest in C. elegans
inferredcites →https://doi.org/10.1038/35888openalex-snapshot
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/382710a0openalex-snapshot
The PIE-1 protein and germline specification in C. elegans embryos
inferredcites →https://doi.org/10.1038/nprot.2006.222openalex-snapshot
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
inferredcites →https://doi.org/10.1038/nrg1923openalex-snapshot
Bridging the regeneration gap: genetic insights from diverse animal models
inferredcites →https://doi.org/10.1038/s41598-017-09690-4openalex-snapshot
Physical determinants of asymmetric cell divisions in the early development of Caenorhabditis elegans
inferredcites →https://doi.org/10.1039/c8sm02231copenalex-snapshot
Understanding the mechanical link between oriented cell division and cerebellar morphogenesis
inferredcites →https://doi.org/10.1042/bse0530001openalex-snapshot
Cell polarity and asymmetric cell division: the C. elegans early embryo
inferredcites →https://doi.org/10.1073/pnas.0511111103openalex-snapshot
Automated cell lineage tracing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1073/pnas.0808622106openalex-snapshot
Interactions between zebrafish pigment cells responsible for the generation of Turing patterns
inferredcites →https://doi.org/10.1073/pnas.75.1.376openalex-snapshot
Cell lineages of the embryo of the nematode Caenorhabditis elegans.
inferredcites →https://doi.org/10.1074/jbc.m115.705426openalex-snapshot
Timing of Tissue-specific Cell Division Requires a Differential Onset of Zygotic Transcription during Metazoan Embryogenesis
inferredcites →https://doi.org/10.1083/jcb.129.4.1071openalex-snapshot
Cell contacts orient some cell division axes in the Caenorhabditis elegans embryo.
inferredcites →https://doi.org/10.1088/1367-2630/aaea91openalex-snapshot
Anti-correlation of cell volumes and cell-cycle times during the embryogenesis of a simple model organism
inferredcites →https://doi.org/10.1091/mbc.e04-08-0712openalex-snapshot
A Spindle Checkpoint Functions during Mitosis in the EarlyCaenorhabditis elegansEmbryo
inferredcites →https://doi.org/10.1101/gr.131920.111openalex-snapshot
Multidimensional regulation of gene expression in the C. elegans embryo
inferredcites →https://doi.org/10.1103/physrevlett.117.188101openalex-snapshot
Setting the Clock for Fail-Safe Early Embryogenesis
inferredcites →https://doi.org/10.1126/science.282.5396.2012openalex-snapshot
Genome Sequence of the Nematode C. elegans : A Platform for Investigating Biology
inferredcites →https://doi.org/10.1126/science.aat0271openalex-snapshot
Programming self-organizing multicellular structures with synthetic cell-cell signaling
inferredcites →https://doi.org/10.1186/1471-2105-7-275openalex-snapshot
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
inferredcites →https://doi.org/10.1242/dev.053538openalex-snapshot
Elaborating polarity: PAR proteins and the cytoskeleton
inferredcites →https://doi.org/10.1242/dev.096040openalex-snapshot
Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis
inferredcites →https://doi.org/10.1242/dev.120.8.2305openalex-snapshot
Two maternal genes, apx-1 and pie-1 , are required to distinguish the fates of equivalent blastomeres in the early Caenorhabditis elegans embryo
inferredcites →https://doi.org/10.1242/dev.154609openalex-snapshot
An asymmetric attraction model for the diversity and robustness of cell arrangement in nematodes
inferredcites →https://doi.org/10.1371/journal.pbio.1000088openalex-snapshot
A Cell Cycle Timer for Asymmetric Spindle Positioning
inferredcites →https://doi.org/10.15252/msb.20145857openalex-snapshot
Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
inferredcites →https://doi.org/10.1534/genetics.115.176099openalex-snapshot
A Transparent Window into Biology: A Primer on Caenorhabditis elegans
inferredcites →https://doi.org/10.1534/genetics.118.300820openalex-snapshot
Establishment of Signaling Interactions with Cellular Resolution for Every Cell Cycle of Embryogenesis
inferredcites →https://doi.org/10.1895/wormbook.1.10.2openalex-snapshot
Notch signaling: genetics and structure
inferredcites →https://doi.org/10.1895/wormbook.1.177.1openalex-snapshot
A Transparent window into biology: A primer on Caenorhabditis elegans
inferredcites →https://doi.org/10.1895/wormbook.1.30.1openalex-snapshot
Asymmetric cell division and axis formation in the embryo
inferredcites →https://doi.org/10.1895/wormbook.1.30.2openalex-snapshot
Polarity establishment, asymmetric division and segregation of fate determinants in early C. elegans embryos
inferredcites →https://doi.org/10.1895/wormbook.1.7.2openalex-snapshot
Wnt signaling in C. elegans
inferredcites →https://doi.org/10.3389/fphys.2014.00001openalex-snapshot
Aphid polyphenisms: trans-generational developmental regulation through viviparity
inferredcites →https://doi.org/10.3389/fphys.2014.00529openalex-snapshot
Power law relationship between cell cycle duration and cell volume in the early embryonic development of Caenorhabditis elegans
inferredcites →https://doi.org/10.7554/elife.04165openalex-snapshot
Active torque generation by the actomyosin cell cortex drives left–right symmetry breaking

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-020-19863-xopenalex-snapshot
Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation
inferred← citeshttps://doi.org/10.1038/s41467-025-58878-0openalex-snapshot
Cell lineage-resolved embryonic morphological map reveals signaling associated with cell fate and size asymmetry
inferred← citeshttps://doi.org/10.1038/s41540-023-00265-wopenalex-snapshot
MorphoSim: an efficient and scalable phase-field framework for accurately simulating multicellular morphologies
inferred← citeshttps://doi.org/10.1038/s42003-025-09220-3openalex-snapshot
EmbSAM: cell boundary localization and Segment Anything Model for fast images of developing embryos
inferred← citeshttps://doi.org/10.1088/1478-3975/ab6356openalex-snapshot
Why and how the nematode’s early embryogenesis can be precise and robust: a mechanical perspective
inferred← citeshttps://doi.org/10.1101/2020.12.13.422560openalex-snapshot
Computable Early C. elegans Embryo with a Data-driven Phase Field Model
inferred← citeshttps://doi.org/10.1109/icbcb52223.2021.9459206openalex-snapshot
Investigating Spatio-Temporal Cellular Interactions in Embryonic Morphogenesis by 4D Nucleus Tracking and Systematic Comparative Analysis — Taking Nematodes C. Elegans and C. Briggsae as Examples
inferred← citeshttps://doi.org/10.1371/journal.pone.0242939openalex-snapshot
DamID identifies targets of CEH-60/PBX that are associated with neuron development and muscle structure in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.3390/membranes14060137openalex-snapshot
Characterizing Cellular Physiological States with Three-Dimensional Shape Descriptors for Cell Membranes
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