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Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences.
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Assessing Normal Embryogenesis inCaenorhabditis elegansUsing a 4D Microscope: Variability of Development and Regional Specification
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Gene expression and development databases forC. elegans
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Cellular development of a nematode: 3-D computer reconstruction of living embryos
inferredcites →https://doi.org/10.1016/0012-1606(83)90201-4openalex-snapshot
The embryonic cell lineage of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/0092-8674(87)90427-2openalex-snapshot
Cellular interactions in early C. elegans embryos
inferredcites →https://doi.org/10.1016/j.cub.2005.12.044openalex-snapshot
A Quantitative Approach to the Study of Cell Shapes and Interactions during Early Chordate Embryogenesis
inferredcites →https://doi.org/10.1016/j.ydbio.2006.03.004openalex-snapshot
Global cell sorting in the C. elegans embryo defines a new mechanism for pattern formation
inferredcites →https://doi.org/10.1016/j.ydbio.2006.03.005openalex-snapshot
Global cell sorting is mediated by local cell–cell interactions in the C. elegans embryo
inferredcites →https://doi.org/10.1016/j.ydbio.2007.11.015openalex-snapshot
Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/s0012-1606(03)00101-5openalex-snapshot
Embryonic cell lineage of the marine nematode Pellioditis marina☆☆Supplementary data associated with this article can be found at doi:10.1016/S0012-1606(03)00101-5.
inferredcites →https://doi.org/10.1016/s0167-7799(97)01169-4openalex-snapshot
Four-dimensional imaging: the exploration of space and time
inferredcites →https://doi.org/10.1023/a:1013178514397openalex-snapshot
Structural Complexity of Early Embryos: A Study on the Nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/349536a0openalex-snapshot
Evidence from reversal of handedness in C. elegans embryos for early cell interactions determining cell fates
inferredcites →https://doi.org/10.1038/357255a0openalex-snapshot
Induction of gut in Caenorhabditis elegans embryos
inferredcites →https://doi.org/10.1038/nature03178openalex-snapshot
The simplicity of metazoan cell lineages
inferredcites →https://doi.org/10.1038/nbt0607-645openalex-snapshot
A green light to expression in time and space
inferredcites →https://doi.org/10.1038/nbt1037openalex-snapshot
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
inferredcites →https://doi.org/10.1038/nbt1305openalex-snapshot
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/npg.els.0001505openalex-snapshot
Caenorhabditis elegans Embryogenesis: Genetic Analysis of Cell Specification
inferredcites →https://doi.org/10.1038/nprot.2006.222openalex-snapshot
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
inferredcites →https://doi.org/10.1046/j.1365-2818.2000.00741.xopenalex-snapshot
A two‐channel four‐dimensional image recording and viewing system with automatic drift correction
inferredcites →https://doi.org/10.1073/pnas.0511111103openalex-snapshot
Automated cell lineage tracing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1073/pnas.75.1.376openalex-snapshot
Cell lineages of the embryo of the nematode Caenorhabditis elegans.
inferredcites →https://doi.org/10.1083/jcb.121.6.1343openalex-snapshot
Cortical and cytoplasmic flow polarity in early embryonic cells of Caenorhabditis elegans.
inferredcites →https://doi.org/10.1083/jcb.129.4.1071openalex-snapshot
Cell contacts orient some cell division axes in the Caenorhabditis elegans embryo.
inferredcites →https://doi.org/10.1093/emboj/20.15.3984openalex-snapshot
Roles for 147 embryonic lethal genes on C.elegans chromosome I identified by RNA interference and video microscopy
inferredcites →https://doi.org/10.1093/genetics/77.1.71openalex-snapshot
THE GENETICS OF CAENORHABDITIS ELEGANS
inferredcites →https://doi.org/10.1093/nar/gkp018openalex-snapshot
Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development
inferredcites →https://doi.org/10.1101/087969532.33.361openalex-snapshot
Specification of Cell Fates in the Early Embryo
inferredcites →https://doi.org/10.1101/gr.3194805openalex-snapshot
New genes with roles in theC. elegansembryo revealed using RNAi of ovary-enriched ORFeome clones
inferredcites →https://doi.org/10.1126/science.1162493openalex-snapshot
Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy
inferredcites →https://doi.org/10.1126/science.273.5275.603openalex-snapshot
Four-Dimensional Imaging: Computer Visualization of 3D Movements in Living Specimens
inferredcites →https://doi.org/10.1145/235815.235821openalex-snapshot
The quickhull algorithm for convex hulls
inferredcites →https://doi.org/10.1163/156854108783900267openalex-snapshot
The early embryonic development of the satellite organism Pristionchus pacificus: differences and similarities with Caenorhabditis elegans
inferredcites →https://doi.org/10.1186/1471-2105-7-275openalex-snapshot
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
inferredcites →https://doi.org/10.1186/1472-6750-4-33openalex-snapshot
Dynamic in vivo imaging and cell tracking using a histone fluorescent protein fusion in mice
inferredcites →https://doi.org/10.1242/dev.00211openalex-snapshot
Mechanisms of cell positioning during C. elegans gastrulation
inferredcites →https://doi.org/10.1242/dev.120.7.2051openalex-snapshot
glp-1 and inductions establishing embryonic axes in C. elegans
inferredcites →https://doi.org/10.1242/dev.121.4.1227openalex-snapshot
An analysis of the response to gut induction in the C. elegans embryo
inferredcites →https://doi.org/10.1242/dev.121.5.1559openalex-snapshot
Specification of anterior-posterior differences within the AB lineage in the C. elegans embryo: a polarising induction
inferredcites →https://doi.org/10.1364/oe.3.000325openalex-snapshot
Multiphoton laser scanning microscopy for four-dimensional analysis of Caenorhabditis elegans embryonic development
inferredcites →https://doi.org/10.1371/journal.pbio.0050237openalex-snapshot
High-Throughput In Vivo Analysis of Gene Expression in Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pgen.0020097openalex-snapshot
Histone H3.3 Variant Dynamics in the Germline of Caenorhabditis elegans
inferredcites →https://doi.org/10.1385/1-59259-685-1:323openalex-snapshot
Cell Lineage Analysis: Videomicroscopy Techniques
inferredcites →https://doi.org/10.1895/wormbook.1.108.1openalex-snapshot
Transformation and microinjection
inferredcites →https://doi.org/10.1895/wormbook.1.4.1openalex-snapshot
Notch signaling in the C. elegans embryo
inferredcites →https://doi.org/10.2144/02324bm01openalex-snapshot
PCR Fusion-Based Approach to Create Reporter Gene Constructs for Expression Analysis in Transgenic C. elegans
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A Mathematical Model for Collective Cell Migration in the Presence of Multiple Distinct Stimuli
inferred← citeshttps://doi.org/10.1002/dvdy.22233openalex-snapshot
Cell fate specification in the C. elegans embryo
inferred← citeshttps://doi.org/10.1002/dvg.22928openalex-snapshot
Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time
inferred← citeshttps://doi.org/10.1007/s13534-014-0162-yopenalex-snapshot
Automatic cell identification in the unique system of invariant embryogenesis in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1016/b978-0-12-544172-8.00012-8openalex-snapshot
Cell Identification and Cell Lineage Analysis
inferred← citeshttps://doi.org/10.1016/j.cell.2013.11.046openalex-snapshot
De Novo Inference of Systems-Level Mechanistic Models of Development from Live-Imaging-Based Phenotype Analysis
inferred← citeshttps://doi.org/10.1016/j.cels.2016.07.005openalex-snapshot
Compensatory Cell Movements Confer Robustness to Mechanical Deformation during Embryonic Development
inferred← citeshttps://doi.org/10.1016/j.cels.2022.07.001openalex-snapshot
Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis
inferred← citeshttps://doi.org/10.1016/j.cnsns.2022.106966openalex-snapshot
Comparison between phase-field model and coarse-grained model for characterizing cell-resolved morphological and mechanical properties in a multicellular system
inferred← citeshttps://doi.org/10.1016/j.coisb.2018.11.004openalex-snapshot
Light-microscopy methods in C. elegans research
inferred← citeshttps://doi.org/10.1016/j.csbj.2022.08.024openalex-snapshot
Delineating the mechanisms and design principles of Caenorhabditis elegans embryogenesis using in toto high-resolution imaging data and computational modeling
inferred← citeshttps://doi.org/10.1016/j.cub.2011.06.016openalex-snapshot
Notch-Dependent Induction of Left/Right Asymmetry in C. elegans Interneurons and Motoneurons
inferred← citeshttps://doi.org/10.1016/j.jtbi.2010.10.003openalex-snapshot
Modelling cell lineage using a meta-Boolean tree model with a relation to gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.ydbio.2012.11.034openalex-snapshot
A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress
inferred← citeshttps://doi.org/10.1016/j.ydbio.2014.10.014openalex-snapshot
Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis
inferred← citeshttps://doi.org/10.1038/embor.2010.183openalex-snapshot
Putting together rather than taking apart
inferred← citeshttps://doi.org/10.1038/s41467-020-19863-xopenalex-snapshot
Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty323openalex-snapshot
Deep reinforcement learning of cell movement in the early stage of C.elegans embryogenesis
inferred← citeshttps://doi.org/10.1101/2024.05.15.594414openalex-snapshot
Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos
inferred← citeshttps://doi.org/10.1101/776062openalex-snapshot
System-Level Quantification and Phenotyping of Early Embryonic Morphogenesis of Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1117/1.3477535openalex-snapshot
Third-harmonic generation for the study of Caenorhabditis elegans embryogenesis
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Cell Neighbor Determination in the Metazoan Embryo System
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Plectus - a stepping stone in embryonic cell lineage evolution of nematodes
inferred← citeshttps://doi.org/10.1186/s12859-017-1717-6openalex-snapshot
Biologically constrained optimization based cell membrane segmentation in C. elegans embryos
inferred← citeshttps://doi.org/10.1242/dev.086256openalex-snapshot
Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos
inferred← citeshttps://doi.org/10.1242/dev.096040openalex-snapshot
Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis
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In preprints: quantitative decoupling between regulatory modules safeguards phenotypic robustness
inferred← citeshttps://doi.org/10.1371/journal.pone.0126947openalex-snapshot
The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio-Temporal Expression Dynamics during Embryogenesis
inferred← citeshttps://doi.org/10.1371/journal.pone.0166551openalex-snapshot
An Observation-Driven Agent-Based Modeling and Analysis Framework for C. elegans Embryogenesis
inferred← citeshttps://doi.org/10.1534/g3.113.006718openalex-snapshot
par-1, Atypicalpkc, and PP2A/B55sur-6Are Implicated in the Regulation of Exocyst-Mediated Membrane Trafficking inCaenorhabditis elegans
inferred← citeshttps://doi.org/10.1534/genetics.118.300820openalex-snapshot
Establishment of Signaling Interactions with Cellular Resolution for Every Cell Cycle of Embryogenesis
inferred← citeshttps://doi.org/10.3390/appliedmath4040077openalex-snapshot
A Mathematical Model for Collective Behaviors and Emergent Patterns Driven by Multiple Distinct Stimuli Produced by Multiple Species
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Strategies for pushing nonlinear microscopy towards its performance limits
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