On the public citation graph

Active transcription regulates ORC/MCM distribution whereas replication timing correlates with ORC density in human cells

https://doi.org/10.1101/778423
0 signed · 66 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-981-10-6955-0_11openalex-snapshot
Replication Domains: Genome Compartmentalization into Functional Replication Units
inferredcites →https://doi.org/10.1007/s10577-009-9087-1openalex-snapshot
Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches
inferredcites →https://doi.org/10.1007/s12064-012-0162-3openalex-snapshot
Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
inferredcites →https://doi.org/10.1016/j.ceb.2009.08.002openalex-snapshot
Eukaryotic DNA replication control: Lock and load, then fire
inferredcites →https://doi.org/10.1016/j.cell.2017.07.043openalex-snapshot
Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses
inferredcites →https://doi.org/10.1016/j.gdata.2016.07.003openalex-snapshot
Characterization of the replication timing program of 6 human model cell lines
inferredcites →https://doi.org/10.1016/j.jmb.2013.09.021openalex-snapshot
From Simple Bacterial and Archaeal Replicons to Replication N/U-Domains
inferredcites →https://doi.org/10.1016/j.jmb.2014.05.027openalex-snapshot
Chromatin Structure and Replication Origins: Determinants of Chromosome Replication and Nuclear Organization
inferredcites →https://doi.org/10.1016/j.molcel.2013.03.004openalex-snapshot
Quantitative, Genome-Wide Analysis of Eukaryotic Replication Initiation and Termination
inferredcites →https://doi.org/10.1016/j.tibs.2005.06.007openalex-snapshot
Pumps, paradoxes and ploughshares: mechanism of the MCM2–7 DNA helicase
inferredcites →https://doi.org/10.1016/s1097-2765(00)80227-0openalex-snapshot
The Spatial Position and Replication Timing of Chromosomal Domains Are Both Established in Early G1 Phase
inferredcites →https://doi.org/10.1038/nature10895openalex-snapshot
Intrinsic coupling of lagging-strand synthesis to chromatin assembly
inferredcites →https://doi.org/10.1038/nature13986openalex-snapshot
Topologically associating domains are stable units of replication-timing regulation
inferredcites →https://doi.org/10.1038/ncb2113openalex-snapshot
The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells
inferredcites →https://doi.org/10.1038/ncomms10208openalex-snapshot
Replication landscape of the human genome
inferredcites →https://doi.org/10.1038/nprot.2012.101openalex-snapshot
Identifying ChIP-seq enrichment using MACS
inferredcites →https://doi.org/10.1038/nprot.2012.145openalex-snapshot
Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm
inferredcites →https://doi.org/10.1038/nrm4002openalex-snapshot
DNA replication origin activation in space and time
inferredcites →https://doi.org/10.1038/nsmb.2339openalex-snapshot
Unraveling cell type–specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs
inferredcites →https://doi.org/10.1038/s41467-018-06066-8openalex-snapshot
Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing
inferredcites →https://doi.org/10.1038/s41556-019-0282-9openalex-snapshot
H4K20me0 recognition by BRCA1–BARD1 directs homologous recombination to sister chromatids
inferredcites →https://doi.org/10.1038/s41594-018-0171-0openalex-snapshot
Transcription shapes DNA replication initiation and termination in human cells
inferredcites →https://doi.org/10.1073/pnas.0911500106openalex-snapshot
A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication
inferredcites →https://doi.org/10.1073/pnas.1609060113openalex-snapshot
Selectivity of ORC binding sites and the relation to replication timing, fragile sites, and deletions in cancers
inferredcites →https://doi.org/10.1073/pnas.55.3.599openalex-snapshot
Autoradiography of chromosomal DNA fibers from Chinese hamster cells.
inferredcites →https://doi.org/10.1074/jbc.m705905200openalex-snapshot
ATP-dependent Assembly of the Human Origin Recognition Complex
inferredcites →https://doi.org/10.1083/jcb.201109105openalex-snapshot
Open chromatin structures regulate the efficiencies of pre-RC formation and replication initiation in Epstein-Barr virus
inferredcites →https://doi.org/10.1091/mbc.e06-04-0298openalex-snapshot
DNA Replication Origin Interference Increases the Spacing between Initiation Events in Human Cells
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btw069openalex-snapshot
Integrated genome browser: visual analytics platform for genomics
inferredcites →https://doi.org/10.1093/emboj/20.16.4588openalex-snapshot
Human origin recognition complex binds to the region of the latent origin of DNA replication of Epstein–Barr virus
inferredcites →https://doi.org/10.1093/nar/gkt012openalex-snapshot
Histone H4 Lysine 20 methylation: key player in epigenetic regulation of genomic integrity
inferredcites →https://doi.org/10.1093/nar/gkv509openalex-snapshot
Cdt1-binding protein GRWD1 is a novel histone-binding protein that facilitates MCM loading through its influence on chromatin architecture
inferredcites →https://doi.org/10.1093/nar/gkw760openalex-snapshot
Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq)
inferredcites →https://doi.org/10.1093/nar/gkx1265openalex-snapshot
Bacterial artificial chromosomes establish replication timing and sub-nuclear compartment de novo as extra-chromosomal vectors
inferredcites →https://doi.org/10.1093/nar/gky476openalex-snapshot
Genome-wide analysis of the spatiotemporal regulation of firing and dormant replication origins in human cells
inferredcites →https://doi.org/10.1093/nar/gky797openalex-snapshot
Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions
inferredcites →https://doi.org/10.1101/cshperspect.a010124openalex-snapshot
Helicase Loading at Chromosomal Origins of Replication
inferredcites →https://doi.org/10.1101/gad.177444.111openalex-snapshot
PR-Set7 and H4K20me1: at the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription
inferredcites →https://doi.org/10.1101/gad.285114.116openalex-snapshot
DNA replication origins—where do we begin?
inferredcites →https://doi.org/10.1101/gr.097873.109openalex-snapshot
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
inferredcites →https://doi.org/10.1101/gr.121830.111openalex-snapshot
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
inferredcites →https://doi.org/10.1101/gr.142331.112openalex-snapshot
Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing
inferredcites →https://doi.org/10.1101/gr.155218.113openalex-snapshot
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins
inferredcites →https://doi.org/10.1101/gr.192799.115openalex-snapshot
The chromatin environment shapes DNA replication origin organization and defines origin classes
inferredcites →https://doi.org/10.1101/gr.195305.115openalex-snapshot
Replication timing is regulated by the number of MCMs loaded at origins
inferredcites →https://doi.org/10.1126/science.1066101openalex-snapshot
Genome-Wide Distribution of ORC and MCM Proteins in S. cerevisiae : High-Resolution Mapping of Replication Origins
inferredcites →https://doi.org/10.1126/science.1536007openalex-snapshot
A Yeast Chromosomal Origin of DNA Replication Defined by Multiple Functional Elements
inferredcites →https://doi.org/10.1126/science.aau0294openalex-snapshot
MCM2 promotes symmetric inheritance of modified histones during DNA replication
inferredcites →https://doi.org/10.1128/mcb.01392-06openalex-snapshot
Identification of New Human Origins of DNA Replication by an Origin-Trapping Assay
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1242/jcs.00087openalex-snapshot
The spatio-temporal organization of DNA replication sites is identical in primary, immortalized and transformed mammalian cells
inferredcites →https://doi.org/10.1242/jcs.00708openalex-snapshot
Complex protein-DNA dynamics at the latent origin of DNA replication of Epstein-Barr virus
inferredcites →https://doi.org/10.1242/jcs.115.1.51openalex-snapshot
Mammalian nuclei become licensed for DNA replication during late telophase
inferredcites →https://doi.org/10.1242/jcs.115.5.869openalex-snapshot
The chromosome replication cycle
inferredcites →https://doi.org/10.12688/f1000research.9008.1openalex-snapshot
How MCM loading and spreading specify eukaryotic DNA replication initiation sites
inferredcites →https://doi.org/10.1371/journal.pcbi.1002322openalex-snapshot
Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome
inferredcites →https://doi.org/10.1371/journal.pcbi.1002443openalex-snapshot
Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines
inferredcites →https://doi.org/10.1371/journal.pgen.1004282openalex-snapshot
The Spatiotemporal Program of DNA Replication Is Associated with Specific Combinations of Chromatin Marks in Human Cells
inferredcites →https://doi.org/10.15252/embj.201488307openalex-snapshot
Dynamic loading and redistribution of the Mcm2‐7 helicase complex through the cell cycle
inferredcites →https://doi.org/10.15252/embj.201796541openalex-snapshot
Histone H4K20 tri‐methylation at late‐firing origins ensures timely heterochromatin replication
inferredcites →https://doi.org/10.3390/genes10030199openalex-snapshot
Origin Firing Regulations to Control Genome Replication Timing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1186/s13059-021-02390-3openalex-snapshot
Transcription shapes DNA replication initiation to preserve genome integrity
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.