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Standing genetic variation and chromosomal rearrangements facilitate local adaptation in a marine fish
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
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Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow
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Capelin (Mallotus villosus) spawning behaviour in Newfoundland waters – the interaction between beach and demersal spawning
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Thermohaline tolerance and embryonic development in capelin eggs (Mallotus villosus) from the Northeast Atlantic Ocean
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Marine speciation on a small planet
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Re-visiting the drivers of capelin recruitment in Newfoundland since 1991
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Capelin (Mallotus villosus) distribution and climate: a sea “canary” for marine ecosystem change
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Adaptation from standing genetic variation
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Chromosomal speciation revisited: rearranging theory with pieces of evidence
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Population genomics of rapid adaptation by soft selective sweeps
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Eco-Evolutionary Genomics of Chromosomal Inversions
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The hitch-hiking effect of a favourable gene
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The barrier to genetic exchange between hybridising populations
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Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
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Erratum: Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
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Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions
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Climate change and evolutionary adaptation
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European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
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The genomics of ecological vicariance in threespine stickleback fish
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The life aquatic: advances in marine vertebrate genomics
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Gene flow favours local adaptation under habitat choice in ciliate microcosms
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Assembly of long, error-prone reads using repeat graphs
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Genomic analysis of Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish
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The genic view of the process of speciation
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Pattern of polymorphism after strong artificial selection in a domestication event
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Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring
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Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon
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Generating samples under a Wright–Fisher neutral model of genetic variation
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adegenet : a R package for the multivariate analysis of genetic markers
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Correcting for ascertainment bias in the inference of population structure
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BEDTools: a flexible suite of utilities for comparing genomic features
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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Integration of the Genetic Map and Genome Assembly of Fugu Facilitates Insights into Distinct Features of Genome Evolution in Teleosts and Mammals
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“Islands of Divergence” in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements
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Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)
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Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata
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The effect of deleterious mutations on neutral molecular variation.
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On the interrelationships between natural mortality, growth parameters, and mean environmental temperature in 175 fish stocks
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Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models
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Tree of Life Reveals Clock-Like Speciation and Diversification
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Computationally Efficient Composite Likelihood Statistics for Demographic Inference
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Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
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Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae)
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Adaptive introgression: a plant perspective
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Evaluating loci for use in the genetic analysis of population structure
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Global patterns in marine dispersal estimates: the influence of geography, taxonomic category and life history
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Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature
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Rapid parallel evolution of standing variation in a single, complex, genomic region is associated with life history in steelhead/rainbow trout
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Turnover and accumulation of genetic diversity across large time-scale cycles of isolation and connection of populations
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Evolution at two time-frames: ancient and common origin of two structural variants involved in local adaptation of the European plaice ( Pleuronectes platessa )
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A chromosome-level assembly of the Atlantic herring – detection of a supergene and other signals of selection
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Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
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A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
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St AMPP : an R package for calculation of genetic differentiation and structure of mixed‐ploidy level populations
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pcadapt : an R package to perform genome scans for selection based on principal component analysis
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Identifying patterns of dispersal, connectivity and selection in the sea scallop,Placopecten magellanicus,using RAD seq‐derived SNP s
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The demographic history of Atlantic salmon ( Salmo salar ) across its distribution range reconstructed from approximate Bayesian computations*
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THE ECOLOGY AND GENETICS OF FITNESS IN CHLAMYDOMONAS. XII. REPEATED SEXUAL EPISODES INCREASE RATES OF ADAPTATION TO NOVEL ENVIRONMENTS
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Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals
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Trans‐Arctic dispersals and the evolution of a circumpolar marine fish species complex, the capelin (Mallotus villosus)
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05069.xopenalex-snapshot
Historical introgression and the role of selective vs. neutral processes in structuring nuclear genetic variation (AFLP) in a circumpolar marine fish, the capelin (Mallotus villosus)
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05080.xopenalex-snapshot
The coupling hypothesis: why genome scans may fail to map local adaptation genes
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Characterizing genomic variation of Arabidopsis thaliana : the roles of geography and climate
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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MATCHING HABITAT CHOICE CAUSES DIRECTED GENE FLOW: A NEGLECTED DIMENSION IN EVOLUTION AND ECOLOGY
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Swimbladder inflation and its implication to the culture of marine finfish larvae
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Comparison of FST outlier tests for SNP loci under selection
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Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a M ytilushybrid zone
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On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes
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Transcriptome‐wide polymorphisms of red abalone ( H aliotis rufescens) reveal patterns of gene flow and local adaptation
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Stacks: an analysis tool set for population genomics
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Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation
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Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13466openalex-snapshot
RAD sequencing reveals within‐generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels
inferredcites →https://doi.org/10.1111/mec.13592openalex-snapshot
Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod
inferredcites →https://doi.org/10.1111/mec.13606openalex-snapshot
Genomics of local adaptation with gene flow
inferredcites →https://doi.org/10.1111/mec.13627openalex-snapshot
Parallel genetic divergence among coastal–marine ecotype pairs of European anchovy explained by differential introgression after secondary contact
inferredcites →https://doi.org/10.1111/mec.13664openalex-snapshot
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
inferredcites →https://doi.org/10.1111/mec.13811openalex-snapshot
Seascape genomics provides evidence for thermal adaptation and current‐mediated population structure in American lobster (Homarus americanus)
inferredcites →https://doi.org/10.1111/mec.14167openalex-snapshot
Linked selection, demography and the evolution of correlated genomic landscapes in birds and beyond
inferredcites →https://doi.org/10.1111/mec.14207openalex-snapshot
Genome architecture enables local adaptation of Atlantic cod despite high connectivity
inferredcites →https://doi.org/10.1111/mec.14290openalex-snapshot
Speciation as a sieve for ancestral polymorphism
inferredcites →https://doi.org/10.1111/mec.14584openalex-snapshot
Comparing methods for detecting multilocus adaptation with multivariate genotype–environment associations
inferredcites →https://doi.org/10.1111/mec.14942openalex-snapshot
Putatively adaptive genetic variation in the giant California sea cucumber ( Parastichopus californicus ) as revealed by environmental association analysis of restriction‐site associated DNA sequencing data
inferredcites →https://doi.org/10.1111/mec.14965openalex-snapshot
Chromosomal fusion and life history‐associated genomic variation contribute to within‐river local adaptation of Atlantic salmon
inferredcites →https://doi.org/10.1111/mec.15010openalex-snapshot
Disentangling structural genomic and behavioural barriers in a sea of connectivity
inferredcites →https://doi.org/10.1111/mec.15065openalex-snapshot
Chromosome polymorphisms track trans‐Atlantic divergence and secondary contact in Atlantic salmon
inferredcites →https://doi.org/10.1111/mec.15066openalex-snapshot
Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification
inferredcites →https://doi.org/10.1111/nph.16039openalex-snapshot
Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
inferredcites →https://doi.org/10.1126/science.292.5517.673openalex-snapshot
Range Shifts and Adaptive Responses to Quaternary Climate Change
inferredcites →https://doi.org/10.1139/cjfas-2017-0058openalex-snapshot
Low tolerance of salt water in a marine fish: new and historical evidence for surprising local adaption in the well-studied commercially exploited capelin
inferredcites →https://doi.org/10.1139/f00-185openalex-snapshot
Ecosystem changes and the effects on capelin (Mallotus villosus), a major forage species
inferredcites →https://doi.org/10.1139/f81-028openalex-snapshot
Wind Regulation of Emergence Times and Early Larval Survival in Capelin (Mallotus villosus)
inferredcites →https://doi.org/10.1139/f81-179openalex-snapshot
Prediction of Egg Development and Mortality Rates in Capelin (Mallotus viliosus) from Meteorological, Hydrographic, and Biological Factors
inferredcites →https://doi.org/10.1139/f82-098openalex-snapshot
Environmental Regulation of Growth Rate, Efficiency, and Swimming Performance in Larval Capelin (Mallotus villosus), and its Application to the Match/Mismatch Hypothesis
inferredcites →https://doi.org/10.1139/f84-141openalex-snapshot
Meteorological and Hydrographic Regulation of Year-Class Strength in Capelin (Mallotus villosus)
inferredcites →https://doi.org/10.1146/annurev-genet-110711-155511openalex-snapshot
Genetics of Climate Change Adaptation
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How and Why Chromosome Inversions Evolve
inferredcites →https://doi.org/10.1371/journal.pbio.2000234openalex-snapshot
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
inferredcites →https://doi.org/10.1371/journal.pbio.3000391openalex-snapshot
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers
inferredcites →https://doi.org/10.1371/journal.pcbi.1005944openalex-snapshot
MUMmer4: A fast and versatile genome alignment system
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1007526openalex-snapshot
Ancestral polymorphisms explain the role of chromosomal inversions in speciation
inferredcites →https://doi.org/10.1371/journal.pone.0032253openalex-snapshot
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
inferredcites →https://doi.org/10.1371/journal.pone.0040224openalex-snapshot
Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0087589openalex-snapshot
Bottom-Up Regulation of Capelin, a Keystone Forage Species
inferredcites →https://doi.org/10.1371/journal.pone.0102089openalex-snapshot
The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1534/g3.119.400088openalex-snapshot
The Effect of Neutral Recombination Variation on Genome Scans for Selection
inferredcites →https://doi.org/10.1534/genetics.106.064642openalex-snapshot
Controlling the False-Positive Rate in Multilocus Genome Scans for Selection
inferredcites →https://doi.org/10.1534/genetics.108.092221openalex-snapshot
A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
inferredcites →https://doi.org/10.1534/genetics.118.301747openalex-snapshot
Local PCA Shows How the Effect of Population Structure Differs Along the Genome
inferredcites →https://doi.org/10.1554/05-273.1openalex-snapshot
THE SIGNATURE OF POSITIVE SELECTION ON STANDING GENETIC VARIATION
inferredcites →https://doi.org/10.18637/jss.v064.i03openalex-snapshot
Exploring Diallelic Genetic Markers: The HardyWeinberg Package
inferredcites →https://doi.org/10.18637/jss.v064.i07openalex-snapshot
PReMiuM : An R Package for Profile Regression Mixture Models Using Dirichlet Processes
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The Gelasian Stage (Upper Pliocene): A new unit of the global standard chronostratigraphic scale
inferredcites →https://doi.org/10.3354/meps07363openalex-snapshot
Circumpolar genetic population structure of capelin Mallotus villosus
inferredcites →https://doi.org/10.3354/meps11792openalex-snapshot
A decade of seascape genetics: contributions to basic and applied marine connectivity
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
inferredcites →https://doi.org/10.7717/peerj.4958openalex-snapshot
D-GENIES: dot plot large genomes in an interactive, efficient and simple way
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.tree.2020.03.002openalex-snapshot
A Roadmap for Understanding the Evolutionary Significance of Structural Genomic Variation
inferred← citeshttps://doi.org/10.1093/jhered/esaa020openalex-snapshot
Consequences of Single-Locus and Tightly Linked Genomic Architectures for Evolutionary Responses to Environmental Change
inferred← citeshttps://doi.org/10.1101/2025.09.27.678988openalex-snapshot
Chromosomal inversions assist acute salinity and temperature adaptation in Atlantic cod ( Gadus Morhua ) eggs
inferred← citeshttps://doi.org/10.1101/662577openalex-snapshot
Evolution at two time-frames: ancient and common origin of two structural variants involved in local adaptation of the European plaice ( Pleuronectes platessa )
inferred← citeshttps://doi.org/10.1111/eva.12979openalex-snapshot
Estimating the contribution of Greenland Halibut (Reinhardtius hippoglossoides) stocks to nurseries by means of genotyping‐by‐sequencing: Sex and time matter
inferred← citeshttps://doi.org/10.1111/mec.15565openalex-snapshot
Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species
inferred← citeshttps://doi.org/10.1111/mec.15835openalex-snapshot
Thermal adaptation rather than demographic history drives genetic structure inferred by copy number variants in a marine fish
inferred← citeshttps://doi.org/10.1139/cjfas-2022-0081openalex-snapshot
Connectivity and natal sources of Greenland halibut in the gulf of St. Lawrence inferred from otolith chemistry
inferred← citeshttps://doi.org/10.3390/genes14040821openalex-snapshot
A Genomic Quantitative Study on the Contribution of the Ancestral-State Bases Relative to Derived Bases in the Divergence and Local Adaptation of Populus davidiana
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