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Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/stem.1711openalex-snapshot

Critical Role of Jak2 in the Maintenance and Function of Adult Hematopoietic Stem Cells

inferredcites →https://doi.org/10.1007/s00277-015-2314-2openalex-snapshot

Epidemiology of chronic myeloid leukaemia: an update

inferredcites →https://doi.org/10.1016/j.cell.2007.01.003openalex-snapshot

FoxOs Are Critical Mediators of Hematopoietic Stem Cell Resistance to Physiologic Oxidative Stress

inferredcites →https://doi.org/10.1016/j.cell.2013.03.035openalex-snapshot

Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes

inferredcites →https://doi.org/10.1016/j.cell.2013.03.036openalex-snapshot

Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers

inferredcites →https://doi.org/10.1016/j.cell.2016.09.037openalex-snapshot

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

inferredcites →https://doi.org/10.1016/j.cell.2017.07.032openalex-snapshot

Restoration of TET2 Function Blocks Aberrant Self-Renewal and Leukemia Progression

inferredcites →https://doi.org/10.1016/j.cell.2018.12.015openalex-snapshot

Predicting Splicing from Primary Sequence with Deep Learning

inferredcites →https://doi.org/10.1016/j.devcel.2015.12.014openalex-snapshot

Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis

inferredcites →https://doi.org/10.1016/j.exphem.2010.06.010openalex-snapshot

Synchrony of telomere length among hematopoietic cells

inferredcites →https://doi.org/10.1016/j.molcel.2009.09.007openalex-snapshot

Structure and Activation Mechanism of the CHK2 DNA Damage Checkpoint Kinase

inferredcites →https://doi.org/10.1016/j.stem.2010.05.016openalex-snapshot

A Distinctive DNA Damage Response in Human Hematopoietic Stem Cells Reveals an Apoptosis-Independent Role for p53 in Self-Renewal

inferredcites →https://doi.org/10.1016/j.stem.2015.09.015openalex-snapshot

Targeted Application of Human Genetic Variation Can Improve Red Blood Cell Production from Stem Cells

inferredcites →https://doi.org/10.1016/s0140-6736(03)14797-6openalex-snapshot

Late presentation of dyskeratosis congenita as apparently acquired aplastic anaemia due to mutations in telomerase RNA

inferredcites →https://doi.org/10.1016/s1074-7613(00)80316-7openalex-snapshot

Telomerase Activity in Hematopoietic Cells Is Associated with Self-Renewal Potential

inferredcites →https://doi.org/10.1038/35071124openalex-snapshot

The ATM–Chk2–Cdc25A checkpoint pathway guards against radioresistant DNA synthesis

inferredcites →https://doi.org/10.1038/371221a0openalex-snapshot

An early haematopoietic defect in mice lacking the transcription factor GATA-2

inferredcites →https://doi.org/10.1038/leu.2010.195openalex-snapshot

Gfi1 and Gfi1b: key regulators of hematopoiesis

inferredcites →https://doi.org/10.1038/nature02989openalex-snapshot

Regulation of oxidative stress by ATM is required for self-renewal of haematopoietic stem cells

inferredcites →https://doi.org/10.1038/nature23876openalex-snapshot

Ascorbate regulates haematopoietic stem cell function and leukaemogenesis

inferredcites →https://doi.org/10.1038/nature24284openalex-snapshot

Association analysis identifies 65 new breast cancer risk loci

inferredcites →https://doi.org/10.1038/nbt.4096openalex-snapshot

Integrating single-cell transcriptomic data across different conditions, technologies, and species

inferredcites →https://doi.org/10.1038/ncomms7691openalex-snapshot

Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms

inferredcites →https://doi.org/10.1038/ng.2213openalex-snapshot

Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits

inferredcites →https://doi.org/10.1038/ng.2528openalex-snapshot

Identification of seven loci affecting mean telomere length and their association with disease

inferredcites →https://doi.org/10.1038/ng.3190openalex-snapshot

Efficient Bayesian mixed-model analysis increases association power in large cohorts

inferredcites →https://doi.org/10.1038/ng.3211openalex-snapshot

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

inferredcites →https://doi.org/10.1038/ng.3286openalex-snapshot

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

inferredcites →https://doi.org/10.1038/ng.3406openalex-snapshot

An atlas of genetic correlations across human diseases and traits

inferredcites →https://doi.org/10.1038/ng.3646openalex-snapshot

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/s41467-017-01261-5openalex-snapshot

Functional mapping and annotation of genetic associations with FUMA

inferredcites →https://doi.org/10.1038/s41467-019-10291-0openalex-snapshot

A comprehensive single cell transcriptional landscape of human hematopoietic progenitors

inferredcites →https://doi.org/10.1038/s41586-018-0321-xopenalex-snapshot

Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations

inferredcites →https://doi.org/10.1038/s41586-018-0579-zopenalex-snapshot

The UK Biobank resource with deep phenotyping and genomic data

inferredcites →https://doi.org/10.1038/s41586-019-1231-2openalex-snapshot

Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls

inferredcites →https://doi.org/10.1038/s41586-020-2430-6openalex-snapshot

Monogenic and polygenic inheritance become instruments for clonal selection

inferredcites →https://doi.org/10.1038/s41588-018-0081-4openalex-snapshot

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

inferredcites →https://doi.org/10.1038/s41588-018-0084-1openalex-snapshot

Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes

inferredcites →https://doi.org/10.1038/s41588-018-0099-7openalex-snapshot

Detection of widespread horizontal pleiotropy in causal relationships inferred from Mendelian randomization between complex traits and diseases

inferredcites →https://doi.org/10.1038/s41588-018-0184-yopenalex-snapshot

Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies

inferredcites →https://doi.org/10.1038/s41588-019-0350-xopenalex-snapshot

Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases

inferredcites →https://doi.org/10.1038/s41588-019-0362-6openalex-snapshot

Interrogation of human hematopoiesis at single-cell and single-variant resolution

inferredcites →https://doi.org/10.1038/s41591-018-0267-4openalex-snapshot

Myelodysplastic syndrome progression to acute myeloid leukemia at the stem cell level

inferredcites →https://doi.org/10.1056/nejmoa042980openalex-snapshot

Mutations in TERT, the Gene for Telomerase Reverse Transcriptase, in Aplastic Anemia

inferredcites →https://doi.org/10.1056/nejmoa073204openalex-snapshot

Human Papillomavirus and Papanicolaou Tests to Screen for Cervical Cancer

inferredcites →https://doi.org/10.1056/nejmoa1315870openalex-snapshot

Long-Term Colorectal-Cancer Mortality after Adenoma Removal

inferredcites →https://doi.org/10.1056/nejmoa1716614openalex-snapshot

Classification and Personalized Prognosis in Myeloproliferative Neoplasms

inferredcites →https://doi.org/10.1056/nejmra1406186openalex-snapshot

Myeloproliferative Neoplasms

inferredcites →https://doi.org/10.1073/pnas.0606238104openalex-snapshot

Lnk negatively regulates self-renewal of hematopoietic stem cells by modifying thrombopoietin-mediated signal transduction

inferredcites →https://doi.org/10.1084/jem.20110447openalex-snapshot

Evi1 is essential for hematopoietic stem cell self-renewal, and its expression marks hematopoietic cells with long-term multilineage repopulating activity

inferredcites →https://doi.org/10.1086/519024openalex-snapshot

A Bayesian Measure of the Probability of False Discovery in Genetic Epidemiology Studies

inferredcites →https://doi.org/10.1093/bioinformatics/btq340openalex-snapshot

METAL: fast and efficient meta-analysis of genomewide association scans

inferredcites →https://doi.org/10.1093/bioinformatics/btw018openalex-snapshot

FINEMAP: efficient variable selection using summary data from genome-wide association studies

inferredcites →https://doi.org/10.1093/ije/dyv080openalex-snapshot

Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression

inferredcites →https://doi.org/10.1093/nar/gku1003openalex-snapshot

STRING v10: protein–protein interaction networks, integrated over the tree of life

inferredcites →https://doi.org/10.1093/nar/gky955openalex-snapshot

GENCODE reference annotation for the human and mouse genomes

inferredcites →https://doi.org/10.1101/782748openalex-snapshot

Inherited Causes of Clonal Hematopoiesis of Indeterminate Potential in TOPMed Whole Genomes

inferredcites →https://doi.org/10.1101/gad.385606openalex-snapshot

Cytokines regulate postnatal hematopoietic stem cell expansion: opposing roles of thrombopoietin and LNK

inferredcites →https://doi.org/10.1111/bjh.12099openalex-snapshot

Diagnostic value of JAK 2 V 617 F somatic mutation for myeloproliferative cancer in 49 488 individuals from the general population

inferredcites →https://doi.org/10.1111/ejh.12788openalex-snapshot

Myeloproliferative neoplasms: trends in incidence, prevalence and survival in Norway

inferredcites →https://doi.org/10.1182/blood-2002-07-2334openalex-snapshot

Telomerase is required to slow telomere shortening and extend replicative lifespan of HSCs during serial transplantation

inferredcites →https://doi.org/10.1182/blood-2004-08-2989openalex-snapshot

Haploinsufficiency of GATA-2 perturbs adult hematopoietic stem-cell homeostasis

inferredcites →https://doi.org/10.1182/blood-2004-10-4077openalex-snapshot

Podocalyxin is a CD34-related marker of murine hematopoietic stem cells and embryonic erythroid cells

inferredcites →https://doi.org/10.1182/blood-2010-04-280305openalex-snapshot

Evidence that Growth factor independence 1b regulates dormancy and peripheral blood mobilization of hematopoietic stem cells

inferredcites →https://doi.org/10.1182/blood-2015-06-652941openalex-snapshot

Germ line variants predispose to both JAK2 V617F clonal hematopoiesis and myeloproliferative neoplasms

inferredcites →https://doi.org/10.1182/blood-2018-06-858597openalex-snapshot

Familial risks of acute myeloid leukemia, myelodysplastic syndromes, and myeloproliferative neoplasms

inferredcites →https://doi.org/10.1182/blood.v100.13.4391openalex-snapshot

Lentiviral gene transfer and ex vivo expansion of human primitive stem cells capable of primary, secondary, and tertiary multilineage repopulation in NOD/SCID mice

inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot

Model-based Analysis of ChIP-Seq (MACS)

inferredcites →https://doi.org/10.1186/s13059-016-0974-4openalex-snapshot

The Ensembl Variant Effect Predictor

inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot

Second-generation PLINK: rising to the challenge of larger and richer datasets

inferredcites →https://doi.org/10.1242/dev.094961openalex-snapshot

Distinct temporal requirements for Runx1 in hematopoietic progenitors and stem cells

inferredcites →https://doi.org/10.18632/oncotarget.15147openalex-snapshot

SMYD2 lysine methyltransferase regulates leukemia cell growth and regeneration after genotoxic stress

inferredcites →https://doi.org/10.7554/elife.34408openalex-snapshot

The MR-Base platform supports systematic causal inference across the human phenome

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cell.2020.08.030openalex-snapshot

Unraveling Hematopoiesis through the Lens of Genomics

inferred← citeshttps://doi.org/10.1101/2020.06.16.146803openalex-snapshot

Combining genome-wide studies of breast, prostate, ovarian and endometrial cancers maps cross-cancer susceptibility loci and identifies new genetic associations

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