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The diversity and distribution of endophytes across biomes, plant phylogeny, and host tissues—how far have we come and where do we go from here?

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inferredcites →https://doi.org/10.1002/ajb2.1072openalex-snapshot
Distributions of ectomycorrhizal and foliar endophytic fungal communities associated with Pinus ponderosa along a spatially constrained elevation gradient
inferredcites →https://doi.org/10.1002/ece3.953openalex-snapshot
Vertical transmission of fungal endophytes is widespread in forbs
inferredcites →https://doi.org/10.1002/ecy.1537openalex-snapshot
Foliar bacteria and soil fertility mediate seedling performance: a new and cryptic dimension of niche differentiation
inferredcites →https://doi.org/10.1007/978-1-4612-3168-4_9openalex-snapshot
Fungal Endophytes of Tree Leaves
inferredcites →https://doi.org/10.1007/978-3-319-56363-3_10openalex-snapshot
Biogeography of Root-Associated Fungal Endophytes
inferredcites →https://doi.org/10.1007/978-3-319-89833-9_4openalex-snapshot
Tree Endophytes: Cryptic Drivers of Tropical Forest Diversity
inferredcites →https://doi.org/10.1007/978-94-007-1599-8_9openalex-snapshot
Growth-Promoting Endophytic Fungi of Forest Trees
inferredcites →https://doi.org/10.1007/bf01574772openalex-snapshot
Taxol from fungal endophytes and the issue of biodiversity
inferredcites →https://doi.org/10.1007/bf02012947openalex-snapshot
Fungi, leaves, and the theory of island biogeography
inferredcites →https://doi.org/10.1007/bf02539143openalex-snapshot
Distribution of epiphytic bacteria on olive leaves and the influence of leaf age and sampling time
inferredcites →https://doi.org/10.1007/s00203-011-0695-8openalex-snapshot
Endophytic bacteria of Mammillaria fraileana, an endemic rock-colonizing cactus of the southern Sonoran Desert
inferredcites →https://doi.org/10.1007/s00248-006-9179-9openalex-snapshot
The Endophytic Mycoflora of Bark, Leaf, and Stem Tissues of Azadirachta indica A. Juss (Neem) from Varanasi (India)
inferredcites →https://doi.org/10.1007/s00248-012-0029-7openalex-snapshot
Season and Tissue Type Affect Fungal Endophyte Communities of the Indian Medicinal Plant Tinospora cordifolia More Strongly than Geographic Location
inferredcites →https://doi.org/10.1007/s00248-014-0563-6openalex-snapshot
Fungal Endophytes in Aboveground Tissues of Desert Plants: Infrequent in Culture, but Highly Diverse and Distinctive Symbionts
inferredcites →https://doi.org/10.1007/s00248-016-0742-8openalex-snapshot
Phyllosphere Fungal Communities Differentiate More Thoroughly than Bacterial Communities Along an Elevation Gradient
inferredcites →https://doi.org/10.1007/s00248-017-1002-2openalex-snapshot
Extensive Overlap of Tropical Rainforest Bacterial Endophytes between Soil, Plant Parts, and Plant Species
inferredcites →https://doi.org/10.1007/s00248-019-01336-4openalex-snapshot
Plant Identity Influences Foliar Fungal Symbionts More Than Elevation in the Colorado Rocky Mountains
inferredcites →https://doi.org/10.1007/s00300-008-0515-zopenalex-snapshot
Endophytic fungi associated with the Antarctic grass Deschampsia antarctica Desv. (Poaceae)
inferredcites →https://doi.org/10.1007/s00442-004-1679-zopenalex-snapshot
Rapid nutrient cycling in leaf litter from invasive plants in Hawai?i
inferredcites →https://doi.org/10.1007/s00572-004-0329-yopenalex-snapshot
On the nutritional dependence of certain trees on root symbiosis with belowground fungi (an English translation of A.B. Frank’s classic paper of 1885)
inferredcites →https://doi.org/10.1007/s00572-004-0330-5openalex-snapshot
A.B. Frank and mycorrhizae: the challenge to evolutionary and ecologic theory
inferredcites →https://doi.org/10.1007/s005720100112openalex-snapshot
Dark septate endophytes - are they mycorrhizal?
inferredcites →https://doi.org/10.1007/s10531-011-0004-5openalex-snapshot
Endophytic fungal communities in woody perennials of three tropical forest types of the Western Ghats, southern India
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Fungal endophytes: modifiers of plant disease
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The taxonomy of rhizobia: an overview
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The 125th anniversary of the first postulation of the soil origin of endophytic bacteria – a tribute to M.L.V. Galippe
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Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and composition
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The Ecology and Natural History of Foliar Bacteria with a Focus on Tropical Forests and Agroecosystems
inferredcites →https://doi.org/10.1007/s13199-017-0527-yopenalex-snapshot
Thermotolerance of fungal endophytes isolated from plants adapted to the Thar Desert, India
inferredcites →https://doi.org/10.1007/s13225-010-0034-4openalex-snapshot
Fungal endophytes from higher plants: a prolific source of phytochemicals and other bioactive natural products
inferredcites →https://doi.org/10.1016/j.cell.2006.02.008openalex-snapshot
Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
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Chemical Ecology of Endophytic Fungi: Origins of Secondary Metabolites
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Influence of microbial associations on selenium localization and speciation in roots of Astragalus and Stanleya hyperaccumulators
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Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact
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Factors influencing communities of foliar fungal endophytes in riparian woody plants
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Communities of fungal endophytes in tropical forest grasses: highly diverse host- and habitat generalists characterized by strong spatial structure
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Wild trees in the Amazon basin harbor a great diversity of beneficial endosymbiotic fungi: is this evidence of protective mutualism?
inferredcites →https://doi.org/10.1016/j.funeco.2015.12.006openalex-snapshot
Richness of cultivable endophytic fungi along an altitudinal gradient in wet forests of Costa Rica
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Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline
inferredcites →https://doi.org/10.1016/j.ibiod.2006.01.002openalex-snapshot
Evaluation of fungal endophytes for lignocellulolytic enzyme production and wood biodegradation
inferredcites →https://doi.org/10.1016/j.micres.2006.12.003openalex-snapshot
Study on the diversity of endophytic communities from rice (Oryza sativa L.) and their antagonistic activities in vitro
inferredcites →https://doi.org/10.1016/j.tim.2008.07.008openalex-snapshot
Properties of bacterial endophytes and their proposed role in plant growth
inferredcites →https://doi.org/10.1016/j.tim.2017.07.004openalex-snapshot
Archaea Are Interactive Components of Complex Microbiomes
inferredcites →https://doi.org/10.1016/j.tree.2004.09.011openalex-snapshot
Historical biogeography, ecology and species richness
inferredcites →https://doi.org/10.1016/s0007-1536(30)80014-7openalex-snapshot
Observations on the reproduction and fungal endophytism of Lunularia cruciata (L.) Dumortier
inferredcites →https://doi.org/10.1016/s0007-1536(37)80007-8openalex-snapshot
Further observations on the systemic infection of Lolium
inferredcites →https://doi.org/10.1016/s0269-7491(98)00146-8openalex-snapshot
Densities of endophytic fungi and performance of leafminers (Lepidoptera: Eriocraniidae) on birch along a pollution gradient
inferredcites →https://doi.org/10.1017/s0266467407004038openalex-snapshot
Fungal endophytes nearly double minimum leaf conductance in seedlings of a neotropical tree species
inferredcites →https://doi.org/10.1017/s095375620500273xopenalex-snapshot
The endophytic continuum
inferredcites →https://doi.org/10.1021/jf4008423openalex-snapshot
Production of the Alkaloid Swainsonine by a Fungal Endosymbiont of the Ascomycete Order Chaetothyriales in the Host Ipomoea carnea
inferredcites →https://doi.org/10.1021/jf501674ropenalex-snapshot
Swainsonine-Containing Plants and Their Relationship to Endophytic Fungi
inferredcites →https://doi.org/10.1021/np030096lopenalex-snapshot
Natural Products as Sources of New Drugs over the Period 1981−2002
inferredcites →https://doi.org/10.1021/np030397vopenalex-snapshot
Natural Products from Endophytic Microorganisms
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Stress tolerance in plants via habitat-adapted symbiosis
inferredcites →https://doi.org/10.1038/ismej.2017.119openalex-snapshot
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
inferredcites →https://doi.org/10.1038/nature05286openalex-snapshot
The plant immune system
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Leaf bacterial diversity mediates plant diversity and ecosystem function relationships
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Microbial biogeography: putting microorganisms on the map
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Beyond biogeographic patterns: processes shaping the microbial landscape
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Ecology and exploration of the rare biosphere
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Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species
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Unlinked rRNA genes are widespread among bacteria and archaea
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Mycobiome diversity: high-throughput sequencing and identification of fungi
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Diversity of endophytic mycobiota of tropical tree Tectona grandis Linn.f.: Spatiotemporal and tissue type effects
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Anticancer compounds derived from fungal endophytes: their importance and future challenges
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Plant diversity and endemism in sub‐Saharan tropical Africa
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Water stress and Sphaeropsis sapinea as a latent pathogen of red pine seedlings
inferredcites →https://doi.org/10.1073/pnas.1209872109openalex-snapshot
Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape
inferredcites →https://doi.org/10.1073/pnas.1519288112openalex-snapshot
Library preparation methodology can influence genomic and functional predictions in human microbiome research
inferredcites →https://doi.org/10.1073/pnas.2533483100openalex-snapshot
Fungal endophytes limit pathogen damage in a tropical tree
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Endophytic fungi of Manilkara bidentata leaves in Puerto Rico
inferredcites →https://doi.org/10.1080/00275514.2018.1442078openalex-snapshot
Using collections data to infer biogeographic, environmental, and host structure in communities of endophytic fungi
inferredcites →https://doi.org/10.1080/03650340802477718openalex-snapshot
Phyllospheric microbial populations of ragweed (Ambrosia ElatiorL.) plant grown in toxic metal-contaminated areas
inferredcites →https://doi.org/10.1086/282398openalex-snapshot
Latitudinal Gradients in Species Diversity: A Review of Concepts
inferredcites →https://doi.org/10.1086/342161openalex-snapshot
Evolutionary Origins and Ecological Consequences of Endophyte Symbiosis with Grasses
inferredcites →https://doi.org/10.1086/652373openalex-snapshot
Conceptual Synthesis in Community Ecology
inferredcites →https://doi.org/10.1093/nar/gkr1178openalex-snapshot
The NCBI Taxonomy database
inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
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Obligate Symbiosis in Calluna Vulgaris
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Fungal symbioses in hornworts: a chequered history
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Exposure to the leaf litter microbiome of healthy adults protects seedlings from pathogen damage
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A novel proof of concept for capturing the diversity of endophytic fungi preserved in herbarium specimens
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Bioactive alkaloids in vertically transmitted fungal endophytes
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Differences in endophyte communities of introduced trees depend on the phylogenetic relatedness of the receiving forest
inferredcites →https://doi.org/10.1111/1365-2745.12967openalex-snapshot
A heritable symbiont and host‐associated factors shape fungal endophyte communities across spatial scales
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Plant host identity and soil macronutrients explain little variation in sapling endophyte community composition: Is disturbance an alternative explanation?
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The local environment determines the assembly of root endophytic fungi at a continental scale
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Distance decay relationships in foliar fungal endophytes are driven by rare taxa
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Bacterial seed endophytes: genera, vertical transmission and interaction with plants
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An updated classification of Orchidaceae
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Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences
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A strong species–area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi
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The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
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Beyond the Venn diagram: the hunt for a core microbiome
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Diversity and phylogeny of rhizobia
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Fragmented environment affects birch leaf endophytes
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Enhancing phytoremediation through the use of transgenics and endophytes
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Fungal endophytes: diversity and functional roles
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Not every fungus is everywhere: scaling to the biogeography of fungal–plant interactions across roots, shoots and ecosystems
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Bacterial endophytes: recent developments and applications
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Relocation, high‐latitude warming and host genetic identity shape the foliar fungal microbiome of poplars
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Host associations and beta diversity of fungal endophyte communities in New Guinea rainforest trees
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Genome‐based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles
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Meta‐analysis of deep‐sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns
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Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
inferredcites →https://doi.org/10.1111/nph.14657openalex-snapshot
The emerging science of linked plant–fungal invasions
inferredcites →https://doi.org/10.1111/nph.14716openalex-snapshot
Pervasive interactions between foliar microbes and soil nutrients mediate leaf production and herbivore damage in a tropical forest
inferredcites →https://doi.org/10.1111/nph.15054openalex-snapshot
Phyllosphere microbiology: at the interface between microbial individuals and the plant host
inferredcites →https://doi.org/10.1111/nph.15693openalex-snapshot
Foliar endophytic fungi alter patterns of nitrogen uptake and distribution in Theobroma cacao
inferredcites →https://doi.org/10.1126/science.1078055openalex-snapshot
Thermotolerance Generated by Plant/Fungal Symbiosis
inferredcites →https://doi.org/10.1126/science.1136237openalex-snapshot
A Virus in a Fungus in a Plant: Three-Way Symbiosis Required for Thermal Tolerance
inferredcites →https://doi.org/10.1126/science.1256688openalex-snapshot
Global diversity and geography of soil fungi
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Fungal Endophyte Symbiosis and Plant Diversity in Successional Fields
inferredcites →https://doi.org/10.1126/science.320.5882.1439openalex-snapshot
Critical Time for African Rainforests
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Use of Plant Growth-Promoting Bacteria for Biocontrol of Plant Diseases: Principles, Mechanisms of Action, and Future Prospects
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Long-Distance Dispersal of Fungi
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The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
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Patterns and Processes of Microbial Community Assembly
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Bioprospecting for Microbial Endophytes and Their Natural Products
inferredcites →https://doi.org/10.1128/msphere.00088-19openalex-snapshot
Native and Invading Yellow Starthistle (Centaurea solstitialis) Microbiomes Differ in Composition and Diversity of Bacteria
inferredcites →https://doi.org/10.1128/msystems.00087-17openalex-snapshot
Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity
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A “Cultural” Renaissance: Genomics Breathes New Life into an Old Craft
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Occurrence and distribution of fungal endophytes in tropical forests across a rainfall gradient
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Studies on the incidence of coniferous needle endophytes in the Pacific Northwest
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Endophytic fungi in Scots pine needles: spatial variation and consequences of simulated acid rain
inferredcites →https://doi.org/10.1139/cjb-2018-0085openalex-snapshot
Differences in foliar endophyte communities of red alder (Alnus rubra) exposed to varying air pollutant levels
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145039openalex-snapshot
Microbially Mediated Plant Functional Traits
inferredcites →https://doi.org/10.1146/annurev-ecolsys-121415-032238openalex-snapshot
The Phyllosphere: Microbial Jungle at the Plant–Climate Interface
inferredcites →https://doi.org/10.1146/annurev-phyto-082718-100008openalex-snapshot
Interactions and Coadaptation in Plant Metaorganisms
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FUNGAL ENDOPHYTES: A Continuum of Interactions with Host Plants
inferredcites →https://doi.org/10.1177/1934578x0900401114openalex-snapshot
Chemical and Functional Diversity of Natural Products from Plant Associated Endophytic Fungi
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Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
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An Overview of Endophytic Microbes: Endophytism Defined
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Research priorities for harnessing plant microbiomes in sustainable agriculture
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Bioactivity of Fungal Endophytes as a Function of Endophyte Taxonomy and the Taxonomy and Distribution of Their Host Plants
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Fungal Endophyte Diversity and Bioactivity in the Indian Medicinal Plant Ocimum sanctum Linn
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The Theory of Island Biogeography
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Effects of Invasive Alien Plants on Fire Regimes
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Repository of Fungal Endophytes at Vinstrom, Chennai:Waiting to be Harnessed
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Conducting Meta-Analyses in R with the metafor Package
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ECOLOGICAL IMPLICATIONS OF ANTI-PATHOGEN EFFECTS OF TROPICAL FUNGAL ENDOPHYTES AND MYCORRHIZAE
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The spread of invasive species and infectious disease as drivers of ecosystem change
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A fungus among us: broad patterns of endophyte distribution in the grasses
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Mycorrhizal co‐invasion and novel interactions depend on neighborhood context
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Plant and root endophyte assembly history: interactive effects on native and exotic plants
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Driving the human ecological footprint
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Fungal Endophytes in Stems and Leaves: From Latent Pathogen to Mutualistic Symbiont
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Some Aspects of the Phytogeography of Tropical Africa
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The Unified Neutral Theory of Biodiversity and Biogeography
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Endophyte: The Evolution of a Term, and Clarification of Its Use and Definition
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The Biological Aspects of Rare Plant Conservation
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R: A Language and Environment for Statistical Computing
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