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Differential effects of commensal bacteria on progenitor cell adhesion, division symmetry and tumorigenesis in the Drosophila intestine

https://doi.org/10.1101/799981
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9780470151808.sc02f02s27openalex-snapshot
RNA Expression Profiling from FACS‐Isolated Cells of the Drosophila Intestine
inferredcites →https://doi.org/10.1002/jcp.21227openalex-snapshot
Spindle orientation in animal cell mitosis: Roles of integrin in the control of spindle axis
inferredcites →https://doi.org/10.1007/s00441-009-0828-4openalex-snapshot
Integrin-mediated adhesion and stem-cell-niche interactions
inferredcites →https://doi.org/10.1007/s12015-012-9351-1openalex-snapshot
Genetic Control of Intestinal Stem Cell Specification and Development: A Comparative View
inferredcites →https://doi.org/10.1016/j.cell.2008.01.038openalex-snapshot
Stem Cells and Niches: Mechanisms That Promote Stem Cell Maintenance throughout Life
inferredcites →https://doi.org/10.1016/j.cell.2009.05.014openalex-snapshot
Cytokine/Jak/Stat Signaling Mediates Regeneration and Homeostasis in the Drosophila Midgut
inferredcites →https://doi.org/10.1016/j.cell.2011.08.048openalex-snapshot
Altered Modes of Stem Cell Division Drive Adaptive Intestinal Growth
inferredcites →https://doi.org/10.1016/j.cell.2013.04.009openalex-snapshot
Bacterial-Derived Uracil as a Modulator of Mucosal Immunity and Gut-Microbe Homeostasis in Drosophila
inferredcites →https://doi.org/10.1016/j.cell.2013.12.018openalex-snapshot
PGRP-SC2 Promotes Gut Immune Homeostasis to Limit Commensal Dysbiosis and Extend Lifespan
inferredcites →https://doi.org/10.1016/j.celrep.2014.05.024openalex-snapshot
Slit/Robo Signaling Regulates Cell Fate Decisions in the Intestinal Stem Cell Lineage of Drosophila
inferredcites →https://doi.org/10.1016/j.celrep.2015.07.042openalex-snapshot
Lactobacilli Modulate Epithelial Cytoprotection through the Nrf2 Pathway
inferredcites →https://doi.org/10.1016/j.celrep.2015.08.004openalex-snapshot
Distinct Shifts in Microbiota Composition during Drosophila Aging Impair Intestinal Function and Drive Mortality
inferredcites →https://doi.org/10.1016/j.celrep.2017.07.078openalex-snapshot
Constitutive Immune Activity Promotes Tumorigenesis in Drosophila Intestinal Progenitor Cells
inferredcites →https://doi.org/10.1016/j.celrep.2019.08.014openalex-snapshot
Control of Intestinal Cell Fate by Dynamic Mitotic Spindle Repositioning Influences Epithelial Homeostasis and Longevity
inferredcites →https://doi.org/10.1016/j.chom.2009.01.003openalex-snapshot
Drosophila Intestinal Response to Bacterial Infection: Activation of Host Defense and Stem Cell Proliferation
inferredcites →https://doi.org/10.1016/j.chom.2016.01.008openalex-snapshot
Preventing Age-Related Decline of Gut Compartmentalization Limits Microbiota Dysbiosis and Extends Lifespan
inferredcites →https://doi.org/10.1016/j.cmet.2011.07.012openalex-snapshot
Lactobacillus plantarum Promotes Drosophila Systemic Growth by Modulating Hormonal Signals through TOR-Dependent Nutrient Sensing
inferredcites →https://doi.org/10.1016/j.cois.2020.03.003openalex-snapshot
Microbiomes as modulators of Drosophila melanogaster homeostasis and disease
inferredcites →https://doi.org/10.1016/j.cub.2007.02.052openalex-snapshot
Integrin Signaling Regulates Spindle Orientation in Drosophila to Preserve the Follicular-Epithelium Monolayer
inferredcites →https://doi.org/10.1016/j.immuni.2018.09.017openalex-snapshot
Microbiota-Derived Lactate Activates Production of Reactive Oxygen Species by the Intestinal NADPH Oxidase Nox and Shortens Drosophila Lifespan
inferredcites →https://doi.org/10.1016/j.stem.2008.10.016openalex-snapshot
Tissue Damage-Induced Intestinal Stem Cell Division in Drosophila
inferredcites →https://doi.org/10.1016/j.stem.2012.06.017openalex-snapshot
The Par Complex and Integrins Direct Asymmetric Cell Division in Adult Intestinal Stem Cells
inferredcites →https://doi.org/10.1016/j.stem.2015.09.016openalex-snapshot
Frequent Somatic Mutation in Adult Intestinal Stem Cells Drives Neoplasia and Genetic Mosaicism during Aging
inferredcites →https://doi.org/10.1016/j.stemcr.2014.04.007openalex-snapshot
Drosophila Perlecan Regulates Intestinal Stem Cell Activity via Cell-Matrix Attachment
inferredcites →https://doi.org/10.1016/j.stemcr.2017.04.002openalex-snapshot
Intestinal Stem Cell Pool Regulation in Drosophila
inferredcites →https://doi.org/10.1016/j.ydbio.2013.01.032openalex-snapshot
Integrin signaling is required for maintenance and proliferation of intestinal stem cells in Drosophila
inferredcites →https://doi.org/10.1016/j.ydbio.2014.12.017openalex-snapshot
Dpp/Gbb signaling is required for normal intestinal regeneration during infection
inferredcites →https://doi.org/10.1016/j.yexcr.2011.07.020openalex-snapshot
Intestinal stem cells in the adult Drosophila midgut
inferredcites →https://doi.org/10.1038/cr.2014.27openalex-snapshot
EGFR and Notch signaling respectively regulate proliferative activity and multiple cell lineage differentiation of Drosophila gastric stem cells
inferredcites →https://doi.org/10.1038/emboj.2012.106openalex-snapshot
Drosophila midgut homeostasis involves neutral competition between symmetrically dividing intestinal stem cells
inferredcites →https://doi.org/10.1038/emboj.2013.224openalex-snapshot
Symbiotic lactobacilli stimulate gut epithelial proliferation via Nox‐mediated generation of reactive oxygen species
inferredcites →https://doi.org/10.1038/ismej.2013.86openalex-snapshot
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
inferredcites →https://doi.org/10.1038/nature04333openalex-snapshot
The adult Drosophila posterior midgut is maintained by pluripotent stem cells
inferredcites →https://doi.org/10.1038/nature04371openalex-snapshot
Evidence that stem cells reside in the adult Drosophila midgut epithelium
inferredcites →https://doi.org/10.1038/ncb3214openalex-snapshot
Niche appropriation by Drosophila intestinal stem cell tumours
inferredcites →https://doi.org/10.1038/ncomms5560openalex-snapshot
Automated monitoring and quantitative analysis of feeding behaviour in Drosophila
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nn.2345openalex-snapshot
Twin-spot MARCM to reveal the developmental origin and identity of neurons
inferredcites →https://doi.org/10.1038/s41396-017-0020-xopenalex-snapshot
Microbial community assembly in wild populations of the fruit fly Drosophila melanogaster
inferredcites →https://doi.org/10.1038/s41467-019-10926-2openalex-snapshot
AWD regulates timed activation of BMP signaling in intestinal stem cells to maintain tissue homeostasis
inferredcites →https://doi.org/10.1073/pnas.0911797106openalex-snapshot
Synergy between bacterial infection and genetic predisposition in intestinal dysplasia
inferredcites →https://doi.org/10.1073/pnas.1000072107openalex-snapshot
Epithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88
inferredcites →https://doi.org/10.1073/pnas.1617790114openalex-snapshot
Injury-stimulated and self-restrained BMP signaling dynamically regulates stem cell pool size during Drosophila midgut regeneration
inferredcites →https://doi.org/10.1073/pnas.1809349115openalex-snapshot
Microbiome interactions shape host fitness
inferredcites →https://doi.org/10.1073/pnas.1913976117openalex-snapshot
JNK-dependent intestinal barrier failure disrupts host–microbe homeostasis during tumorigenesis
inferredcites →https://doi.org/10.1080/21688370.2018.1539595openalex-snapshot
Role of gut microbiota in intestinal wound healing and barrier function
inferredcites →https://doi.org/10.1083/jcb.200602160openalex-snapshot
Conditional deletion of β1 integrins in the intestinal epithelium causes a loss of Hedgehog expression, intestinal hyperplasia, and early postnatal lethality
inferredcites →https://doi.org/10.1083/jcb.201302049openalex-snapshot
Injury-induced BMP signaling negatively regulates Drosophila midgut homeostasis
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/carcin/bgp236openalex-snapshot
Role of Notch signaling in colorectal cancer
inferredcites →https://doi.org/10.1093/carcin/bgs137openalex-snapshot
Gut microbiota accelerate tumor growth via c-jun and STAT3 phosphorylation in APC Min/+ mice
inferredcites →https://doi.org/10.1093/nar/gkz114openalex-snapshot
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
inferredcites →https://doi.org/10.1101/gad.1827009openalex-snapshot
Invasive and indigenous microbiota impact intestinal stem cell activity through multiple pathways in Drosophila
inferredcites →https://doi.org/10.1126/science.1136606openalex-snapshot
Multipotent Drosophila Intestinal Stem Cells Specify Daughter Cell Fates by Differential Notch Signaling
inferredcites →https://doi.org/10.1126/science.aab0988openalex-snapshot
Bidirectional Notch signaling regulates Drosophila intestinal stem cell multipotency
inferredcites →https://doi.org/10.1128/mbio.00692-13openalex-snapshot
The Gut Microbiome Modulates Colon Tumorigenesis
inferredcites →https://doi.org/10.1128/mbio.00860-13openalex-snapshot
Frequent Replenishment Sustains the Beneficial Microbiome of Drosophila melanogaster
inferredcites →https://doi.org/10.1128/mbio.01114-18openalex-snapshot
Monoassociation with Lactobacillus plantarum Disrupts Intestinal Homeostasis in Adult Drosophila melanogaster
inferredcites →https://doi.org/10.1128/mbio.01117-14openalex-snapshot
Microbiota-Induced Changes in Drosophila melanogaster Host Gene Expression and Gut Morphology
inferredcites →https://doi.org/10.1128/mbio.01256-18openalex-snapshot
Energy Conservation via Hydrogen Cycling in the Methanogenic Archaeon Methanosarcina barkeri
inferredcites →https://doi.org/10.1172/jci39104openalex-snapshot
The basics of epithelial-mesenchymal transition
inferredcites →https://doi.org/10.1186/1465-9921-14-36openalex-snapshot
Bone morphogenetic proteins enhance an epithelial-mesenchymal transition in normal airway epithelial cells during restitution of a disrupted epithelium
inferredcites →https://doi.org/10.1186/1471-2105-10-1openalex-snapshot
Regularized gene selection in cancer microarray meta-analysis
inferredcites →https://doi.org/10.1186/1471-2105-10-48openalex-snapshot
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
inferredcites →https://doi.org/10.1242/bio.017673openalex-snapshot
Comparative evaluation of the genomes of three common Drosophila -associated bacteria
inferredcites →https://doi.org/10.1242/dev.01644openalex-snapshot
Delta-Notch signalling controls commitment to a secretory fate in the zebrafish intestine
inferredcites →https://doi.org/10.1242/dev.052506openalex-snapshot
The Hippo pathway regulates intestinal stem cell proliferation duringDrosophilaadult midgut regeneration
inferredcites →https://doi.org/10.1242/dev.056671openalex-snapshot
EGF signaling regulates the proliferation of intestinal stem cells in Drosophila
inferredcites →https://doi.org/10.1242/dev.078261openalex-snapshot
Non-autonomous crosstalk between the Jak/Stat and Egfr pathways mediates Apc1-driven intestinal stem cell hyperplasia in the Drosophila adult midgut
inferredcites →https://doi.org/10.1242/dev.113357openalex-snapshot
Enteroendocrine cells are generated from stem cells through a distinct progenitor in the adult Drosophila posterior midgut
inferredcites →https://doi.org/10.1242/dev.171520openalex-snapshot
Commensal microbiota-induced redox signaling activates proliferative signals in the intestinal stem cell microenvironment
inferredcites →https://doi.org/10.1242/jcs.054312openalex-snapshot
Adhesion molecules in the stem cell niche – more than just staying in shape?
inferredcites →https://doi.org/10.1371/journal.pbio.2002985openalex-snapshot
A population genetic interpretation of GWAS findings for human quantitative traits
inferredcites →https://doi.org/10.1371/journal.pbio.2005710openalex-snapshot
Drosophila melanogaster establishes a species-specific mutualistic interaction with stable gut-colonizing bacteria
inferredcites →https://doi.org/10.1371/journal.pbio.3000041openalex-snapshot
An alternative mode of epithelial polarity in the Drosophila midgut
inferredcites →https://doi.org/10.1371/journal.pone.0089387openalex-snapshot
βν Integrin Inhibits Chronic and High Level Activation of JNK to Repress Senescence Phenotypes in Drosophila Adult Midgut
inferredcites →https://doi.org/10.1371/journal.pone.0089680openalex-snapshot
A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures
inferredcites →https://doi.org/10.1371/journal.pone.0094729openalex-snapshot
Drosophila Microbiota Modulates Host Metabolic Gene Expression via IMD/NF-κB Signaling
inferredcites →https://doi.org/10.15252/embj.2018101346openalex-snapshot
Notch and EGFR regulate apoptosis in progenitor cells to ensure gut homeostasis in Drosophila
inferredcites →https://doi.org/10.15252/embj.201899894openalex-snapshot
An inter‐dimer allosteric switch controls NMDA receptor activity
inferredcites →https://doi.org/10.15252/msb.20145645openalex-snapshot
Potential of fecal microbiota for early‐stage detection of colorectal cancer
inferredcites →https://doi.org/10.1534/genetics.118.300224openalex-snapshot
Anatomy and Physiology of the Digestive Tract of Drosophila melanogaster
inferredcites →https://doi.org/10.18632/oncotarget.12151openalex-snapshot
BMP signaling and its paradoxical effects in tumorigenesis and dissemination
inferredcites →https://doi.org/10.3391/mbi.2013.4.1.01openalex-snapshot
The pointy end of the stick: managing biological invasions
inferredcites →https://doi.org/10.3391/mbi.2014.5.1.01openalex-snapshot
Tackling Invasive Alien Species in Europe: the top 20 issues
inferredcites →https://doi.org/10.3748/wjg.v20.i29.9872openalex-snapshot
Colorectal cancer in inflammatory bowel disease: The risk, pathogenesis, prevention and diagnosis
inferredcites →https://doi.org/10.3748/wjg.v22.i2.501openalex-snapshot
Gut microbiota imbalance and colorectal cancer
inferredcites →https://doi.org/10.3791/54219openalex-snapshot
Rearing the Fruit Fly Drosophila melanogaster Under Axenic and Gnotobiotic Conditions
inferredcites →https://doi.org/10.4161/gmic.19896openalex-snapshot
Gut-associated microbes of Drosophila melanogaster
inferredcites →https://doi.org/10.7554/elife.01857openalex-snapshot
Intestinal epithelium-derived BMP controls stem cell self-renewal in Drosophila adult midgut
inferredcites →https://doi.org/10.7554/elife.34110openalex-snapshot
A novel source of arterial valve cells linked to bicuspid aortic valve without raphe in mice
inferredcites →https://doi.org/10.7554/elife.36248openalex-snapshot
Long-term live imaging of the Drosophila adult midgut reveals real-time dynamics of division, differentiation and loss

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fimmu.2019.03128openalex-snapshot
Host-Microbe-Pathogen Interactions: A Review of Vibrio cholerae Pathogenesis in Drosophila
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