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Identification of putative effector genes across the GWAS Catalog using molecular quantitative trait loci from 68 tissues and cell types

https://doi.org/10.1101/808444
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.ajhg.2016.10.003openalex-snapshot
Colocalization of GWAS and eQTL Signals Detects Target Genes
inferredcites →https://doi.org/10.1016/j.ajhg.2017.04.016openalex-snapshot
Large-Scale Identification of Common Trait and Disease Variants Affecting Gene Expression
inferredcites →https://doi.org/10.1016/j.ajhg.2017.05.004openalex-snapshot
Genetic-Variation-Driven Gene-Expression Changes Highlight Genes with Important Functions for Kidney Disease
inferredcites →https://doi.org/10.1016/j.ajhg.2017.06.003openalex-snapshot
Large-Scale Identification of Common Trait and Disease Variants Affecting Gene Expression
inferredcites →https://doi.org/10.1016/j.ajhg.2017.06.005openalex-snapshot
10 Years of GWAS Discovery: Biology, Function, and Translation
inferredcites →https://doi.org/10.1016/j.ajhg.2018.04.011openalex-snapshot
Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS
inferredcites →https://doi.org/10.1016/j.cell.2016.09.024openalex-snapshot
Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations
inferredcites →https://doi.org/10.1016/j.cell.2016.09.025openalex-snapshot
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
inferredcites →https://doi.org/10.1016/j.cellimm.2015.02.004openalex-snapshot
Suppressive effects of androgens on the immune system
inferredcites →https://doi.org/10.1016/j.celrep.2017.05.018openalex-snapshot
Effect of Human Genetic Variability on Gene Expression in Dorsal Root Ganglia and Association with Pain Phenotypes
inferredcites →https://doi.org/10.1016/s2213-2600(16)00046-1openalex-snapshot
Genomic landscape of the individual host response and outcomes in sepsis: a prospective cohort study
inferredcites →https://doi.org/10.1038/nature13835openalex-snapshot
Genetic and epigenetic fine mapping of causal autoimmune disease variants
inferredcites →https://doi.org/10.1038/ncomms14357openalex-snapshot
Connecting genetic risk to disease end points through the human blood plasma proteome
inferredcites →https://doi.org/10.1038/ncomms8545openalex-snapshot
Genomic modulators of gene expression in human neutrophils
inferredcites →https://doi.org/10.1038/ng.2205openalex-snapshot
Genetics of gene expression in primary immune cells identifies cell type–specific master regulators and roles of HLA alleles
inferredcites →https://doi.org/10.1038/ng.2756openalex-snapshot
Systematic identification of trans eQTLs as putative drivers of known disease associations
inferredcites →https://doi.org/10.1038/ng.3314openalex-snapshot
The support of human genetic evidence for approved drug indications
inferredcites →https://doi.org/10.1038/ng.3737openalex-snapshot
Identification of context-dependent expression quantitative trait loci in whole blood
inferredcites →https://doi.org/10.1038/s41467-017-00366-1openalex-snapshot
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
inferredcites →https://doi.org/10.1038/s41467-018-04408-0openalex-snapshot
Testosterone is an endogenous regulator of BAFF and splenic B cell number
inferredcites →https://doi.org/10.1038/s41586-018-0175-2openalex-snapshot
Genomic atlas of the human plasma proteome
inferredcites →https://doi.org/10.1038/s41588-018-0148-2openalex-snapshot
Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits
inferredcites →https://doi.org/10.1038/s41588-018-0154-4openalex-snapshot
Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation
inferredcites →https://doi.org/10.1073/pnas.1115761109openalex-snapshot
Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection
inferredcites →https://doi.org/10.1073/pnas.1401343111openalex-snapshot
Interindividual variation in human T regulatory cells
inferredcites →https://doi.org/10.1073/pnas.1621192114openalex-snapshot
Genetic regulatory signatures underlying islet gene expression and type 2 diabetes
inferredcites →https://doi.org/10.1093/hmg/ddv259openalex-snapshot
Non-coding genetic variants in human disease: Figure 1.
inferredcites →https://doi.org/10.1093/nar/gkw1133openalex-snapshot
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)
inferredcites →https://doi.org/10.1101/178806openalex-snapshot
Genome-wide association studies of brain structure and function in the UK Biobank
inferredcites →https://doi.org/10.1126/science.1246949openalex-snapshot
Innate Immune Activity Conditions the Effect of Regulatory Variants upon Monocyte Gene Expression
inferredcites →https://doi.org/10.1126/science.1246980openalex-snapshot
Common Genetic Variants Modulate Pathogen-Sensing Responses in Human Dendritic Cells
inferredcites →https://doi.org/10.1126/science.1249547openalex-snapshot
Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes
inferredcites →https://doi.org/10.1126/science.1254665openalex-snapshot
Intersection of population variation and autoimmunity genetics in human T cell activation
inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
inferredcites →https://doi.org/10.1172/jci78082openalex-snapshot
Sexual dimorphism in autoimmunity
inferredcites →https://doi.org/10.1371/journal.pbio.0060107openalex-snapshot
Mapping the Genetic Architecture of Gene Expression in Human Liver
inferredcites →https://doi.org/10.1371/journal.pgen.1002078openalex-snapshot
Identification, Replication, and Functional Fine-Mapping of Expression Quantitative Trait Loci in Primary Human Liver Tissue
inferredcites →https://doi.org/10.1371/journal.pgen.1003029openalex-snapshot
Lung eQTLs to Help Reveal the Molecular Underpinnings of Asthma
inferredcites →https://doi.org/10.1371/journal.pgen.1004383openalex-snapshot
Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics
inferredcites →https://doi.org/10.1371/journal.pgen.1005111openalex-snapshot
Host Genetic Variation Influences Gene Expression Response to Rhinovirus Infection
inferredcites →https://doi.org/10.1371/journal.pgen.1006643openalex-snapshot
Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
inferredcites →https://doi.org/10.1371/journal.pone.0024395openalex-snapshot
Genetics of Sputum Gene Expression in Chronic Obstructive Pulmonary Disease
inferredcites →https://doi.org/10.1371/journal.pone.0156914openalex-snapshot
Replication and Characterization of Association between ABO SNPs and Red Blood Cell Traits by Meta-Analysis in Europeans
inferredcites →https://doi.org/10.1371/journal.pone.0212817openalex-snapshot
Maternal anemia and birth weight: A prospective cohort study
inferredcites →https://doi.org/10.7554/elife.00299openalex-snapshot
Integrative genomic analysis of the human immune response to influenza vaccination

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41586-024-07316-0openalex-snapshot
Refining the impact of genetic evidence on clinical success
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa1096openalex-snapshot
MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes
inferred← citeshttps://doi.org/10.1101/871384openalex-snapshot
Dissecting molecular regulatory mechanisms underlying noncoding susceptibility SNPs associated with 19 autoimmune diseases using multi-omics integrative analysis
inferred← citeshttps://doi.org/10.1172/jci.insight.136477openalex-snapshot
Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs
inferred← citeshttps://doi.org/10.1186/s12859-021-04170-zopenalex-snapshot
Estimating colocalization probability from limited summary statistics
inferred← citeshttps://doi.org/10.12688/wellcomeopenres.17230.1openalex-snapshot
Genome-wide association study of susceptibility to hospitalised respiratory infections
inferred← citeshttps://doi.org/10.12688/wellcomeopenres.17230.2openalex-snapshot
Genome-wide association study of susceptibility to hospitalised respiratory infections
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011638openalex-snapshot
Human genetic evidence enriched for side effects of approved drugs
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