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A Synthetic Biology Approach to Sequential Stripe Patterning and Somitogenesis

https://doi.org/10.1101/825406
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jez.b.21305openalex-snapshot
Developmental control of segment numbers in vertebrates
inferredcites →https://doi.org/10.1006/jtbi.2000.2092openalex-snapshot
Gene Networks Capable of Pattern Formation: From Induction to Reaction–Diffusion
inferredcites →https://doi.org/10.1016/j.cbpa.2017.04.008openalex-snapshot
A three-step framework for programming pattern formation
inferredcites →https://doi.org/10.1016/j.cell.2016.03.006openalex-snapshot
Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria
inferredcites →https://doi.org/10.1016/j.cels.2015.10.002openalex-snapshot
A Local, Self-Organizing Reaction-Diffusion Model Can Explain Somite Patterning in Embryos
inferredcites →https://doi.org/10.1016/j.cels.2016.12.001openalex-snapshot
A Blueprint for a Synthetic Genetic Feedback Controller to Reprogram Cell Fate
inferredcites →https://doi.org/10.1016/j.devcel.2006.08.006openalex-snapshot
Quantitative Models of Developmental Pattern Formation
inferredcites →https://doi.org/10.1016/j.tree.2007.10.013openalex-snapshot
Regular pattern formation in real ecosystems
inferredcites →https://doi.org/10.1016/j.ydbio.2006.01.018openalex-snapshot
A clock and wavefront mechanism for somite formation
inferredcites →https://doi.org/10.1016/s0022-5193(76)80131-2openalex-snapshot
A clock and wavefront model for control of the number of repeated structures during animal morphogenesis
inferredcites →https://doi.org/10.1016/s0070-2153(07)81001-5openalex-snapshot
Models of Biological Pattern Formation: From Elementary Steps to the Organization of Embryonic Axes
inferredcites →https://doi.org/10.1021/acssynbio.7b00077openalex-snapshot
A Tug-of-War Mechanism for Pattern Formation in a Genetic Network
inferredcites →https://doi.org/10.1021/sb500233uopenalex-snapshot
Cooperativity To Increase Turing Pattern Space for Synthetic Biology
inferredcites →https://doi.org/10.1038/msb.2013.55openalex-snapshot
Temporal control of self‐organized pattern formation without morphogen gradients in bacteria
inferredcites →https://doi.org/10.1038/nature03461openalex-snapshot
A synthetic multicellular system for programmed pattern formation
inferredcites →https://doi.org/10.1038/nature04488openalex-snapshot
Sexual reproduction selects for robustness and negative epistasis in artificial gene networks
inferredcites →https://doi.org/10.1038/nature07020openalex-snapshot
Control of segment number in vertebrate embryos
inferredcites →https://doi.org/10.1038/nature07389openalex-snapshot
A fast, robust and tunable synthetic gene oscillator
inferredcites →https://doi.org/10.1038/nature08753openalex-snapshot
A synchronized quorum of genetic clocks
inferredcites →https://doi.org/10.1038/s41567-017-0040-5openalex-snapshot
Rethinking pattern formation in reaction–diffusion systems
inferredcites →https://doi.org/10.1039/a702602aopenalex-snapshot
Spatial pattern formation in chemical and biological systems
inferredcites →https://doi.org/10.1073/pnas.0610759104openalex-snapshot
Oscillation patterns in negative feedback loops
inferredcites →https://doi.org/10.1073/pnas.89.9.3977openalex-snapshot
A chemical approach to designing Turing patterns in reaction-diffusion systems.
inferredcites →https://doi.org/10.1088/1742-5468/2013/04/p04006openalex-snapshot
Delay-driven pattern formation in a reaction–diffusion predator–prey model incorporating a prey refuge
inferredcites →https://doi.org/10.1093/nar/gkw1045openalex-snapshot
Engineering robust and tunable spatial structures with synthetic gene circuits
inferredcites →https://doi.org/10.1098/rstb.1952.0012openalex-snapshot
The chemical basis of morphogenesis
inferredcites →https://doi.org/10.1103/physrevb.44.9201openalex-snapshot
Spiral-pattern formation and multistability in Landau-Ginzburg systems
inferredcites →https://doi.org/10.1103/physreve.70.066202openalex-snapshot
Morphological transitions and bistability in Turing systems
inferredcites →https://doi.org/10.1126/science.1156951openalex-snapshot
Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
inferredcites →https://doi.org/10.1126/science.1179047openalex-snapshot
Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation
inferredcites →https://doi.org/10.1126/science.1209042openalex-snapshot
Sequential Establishment of Stripe Patterns in an Expanding Cell Population
inferredcites →https://doi.org/10.1126/science.1225182openalex-snapshot
Developmental Pattern Formation: Insights from Physics and Biology
inferredcites →https://doi.org/10.1126/science.aaa3794openalex-snapshot
Emergent genetic oscillations in a synthetic microbial consortium
inferredcites →https://doi.org/10.1140/epjb/e2014-50017-5openalex-snapshot
Reaction-diffusion scheme for the clock and wavefront mechanism of pattern formation
inferredcites →https://doi.org/10.1371/journal.pbio.1000456openalex-snapshot
Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials
inferredcites →https://doi.org/10.1371/journal.pcbi.0020051openalex-snapshot
Reverse Engineering the Gap Gene Network of Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pcbi.1000235openalex-snapshot
Multistable Decision Switches for Flexible Control of Epigenetic Differentiation
inferredcites →https://doi.org/10.1371/journal.pcbi.1003979openalex-snapshot
Two-Dimensionality of Yeast Colony Expansion Accompanied by Pattern Formation
inferredcites →https://doi.org/10.1371/journal.pone.0153679openalex-snapshot
Turing Patterning Using Gene Circuits with Gas-Induced Degradation of Quorum Sensing Molecules
inferredcites →https://doi.org/10.7554/elife.23702openalex-snapshot
Engineering of a synthetic quadrastable gene network to approach Waddington landscape and cell fate determination

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11538-023-01163-2openalex-snapshot
Reaction–Diffusion Modeling of E. coli Colony Growth Based on Nutrient Distribution and Agar Dehydration
inferred← citeshttps://doi.org/10.1016/j.mbs.2025.109453openalex-snapshot
On pattern formation in the thermodynamically-consistent variational Gray-Scott model
inferred← citeshttps://doi.org/10.20868/upm.thesis.69345openalex-snapshot
Modelado computacional de la autoorganización espacial generada por circuitos genéticos multicelulares
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