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Close relationship between coral-associated Chromera strains despite major differences within the Symbiodiniaceae
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.cub.2012.04.047openalex-snapshot
Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs
inferredcites →https://doi.org/10.1016/j.cub.2013.05.062openalex-snapshot
Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
inferredcites →https://doi.org/10.1016/j.cub.2018.07.008openalex-snapshot
Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts
inferredcites →https://doi.org/10.1016/j.protis.2010.02.004openalex-snapshot
Morphology and Ultrastructure of Multiple Life Cycle Stages of the Photosynthetic Relative of Apicomplexa, Chromera velia
inferredcites →https://doi.org/10.1016/j.protis.2012.08.003openalex-snapshot
Chromera velia is Endosymbiotic in Larvae of the Reef Corals Acropora digitifera and A. tenuis
inferredcites →https://doi.org/10.1016/j.tim.2015.03.008openalex-snapshot
Nitrogen cycling in corals: the key to understanding holobiont functioning?
inferredcites →https://doi.org/10.1016/j.tree.2019.04.010openalex-snapshot
Genome Evolution of Coral Reef Symbionts as Intracellular Residents
inferredcites →https://doi.org/10.1038/ismej.2011.196openalex-snapshot
A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis
inferredcites →https://doi.org/10.1038/ismej.2012.129openalex-snapshot
Environmental distribution of coral-associated relatives of apicomplexan parasites
inferredcites →https://doi.org/10.1038/ismej.2014.182openalex-snapshot
Unfolding the secrets of coral–algal symbiosis
inferredcites →https://doi.org/10.1038/nature06635openalex-snapshot
A photosynthetic alveolate closely related to apicomplexan parasites
inferredcites →https://doi.org/10.1038/nature10249openalex-snapshot
Using the Acropora digitifera genome to understand coral responses to environmental change
inferredcites →https://doi.org/10.1038/nature21707openalex-snapshot
Global warming and recurrent mass bleaching of corals
inferredcites →https://doi.org/10.1038/nclimate1330openalex-snapshot
Coral thermal tolerance shaped by local adaptation of photosymbionts
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/s41396-017-0005-9openalex-snapshot
Deciphering the nature of the coral–Chromeraassociation
inferredcites →https://doi.org/10.1038/s41586-019-1072-zopenalex-snapshot
A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes
inferredcites →https://doi.org/10.1038/s41598-018-35620-zopenalex-snapshot
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions
inferredcites →https://doi.org/10.1038/s42003-018-0098-3openalex-snapshot
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
inferredcites →https://doi.org/10.1038/srep39734openalex-snapshot
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
inferredcites →https://doi.org/10.1073/pnas.1007246107openalex-snapshot
Spliced leader–based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates
inferredcites →https://doi.org/10.1073/pnas.1710733114openalex-snapshot
Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis
inferredcites →https://doi.org/10.1086/bblv223n1p44openalex-snapshot
Study of Cnidarian-Algal Symbiosis in the “Omics” Age
inferredcites →https://doi.org/10.1091/mbc.e11-07-0645openalex-snapshot
A simple guide to biochemical approaches for analyzing protein–lipid interactions
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btx364openalex-snapshot
UpSetR: an R package for the visualization of intersecting sets and their properties
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gkl315openalex-snapshot
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot
KAAS: an automatic genome annotation and pathway reconstruction server
inferredcites →https://doi.org/10.1101/391565openalex-snapshot
A widespread coral-infecting apicomplexan contains a plastid encoding chlorophyll biosynthesis
inferredcites →https://doi.org/10.1101/652131openalex-snapshot
Transcriptomic insights into the establishment of coral-algal symbioses from the symbiont perspective
inferredcites →https://doi.org/10.1111/1462-2920.14134openalex-snapshot
Global diversity and distribution of close relatives of apicomplexan parasites
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04167.xopenalex-snapshot
The host transcriptome remains unaltered during the establishment of coral–algal symbioses
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02419.xopenalex-snapshot
Microbial diversity associated with four functional groups of benthic reef algae and the reef‐building coral Montastraea annularis
inferredcites →https://doi.org/10.1111/mec.13328openalex-snapshot
Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light‐enhanced calcification in corals
inferredcites →https://doi.org/10.1111/mec.13659openalex-snapshot
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome
inferredcites →https://doi.org/10.1126/science.aad0408openalex-snapshot
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
inferredcites →https://doi.org/10.1128/jb.00013-09openalex-snapshot
Nitrite Transport Activity of the ABC-Type Cyanate Transporter of the Cyanobacterium Synechococcus elongatus
inferredcites →https://doi.org/10.1128/mmbr.05014-11openalex-snapshot
Cell Biology of Cnidarian-Dinoflagellate Symbiosis
inferredcites →https://doi.org/10.1146/annurev.arplant.42.1.579openalex-snapshot
The Roles Of Heat Shock Proteins In Plants
inferredcites →https://doi.org/10.1146/annurev.pp.42.060191.003051openalex-snapshot
The Roles of Heat Shock Proteins in Plants
inferredcites →https://doi.org/10.1186/1471-2105-12-35openalex-snapshot
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
inferredcites →https://doi.org/10.1186/s12864-018-4857-9openalex-snapshot
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13059-018-1552-8openalex-snapshot
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages
inferredcites →https://doi.org/10.1371/journal.pone.0035269openalex-snapshot
Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
inferredcites →https://doi.org/10.3389/fmicb.2018.02043openalex-snapshot
Protists Within Corals: The Hidden Diversity
inferredcites →https://doi.org/10.3389/fmicb.2019.00173openalex-snapshot
Thermal and Herbicide Tolerances of Chromerid Algae and Their Ability to Form a Symbiosis With Corals
inferredcites →https://doi.org/10.7554/elife.06974openalex-snapshot
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1146/annurev-biodatasci-122120-030732openalex-snapshot
Bioinformatics of Corals: Investigating Heterogeneous Omics Data from Coral Holobionts for Insight into Reef Health and Resilience
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