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GPSRdocker: A Docker-based Resource for Genomics, Proteomics and Systems biology

https://doi.org/10.1101/827766
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jmr.1061openalex-snapshot
SVM based prediction of RNA‐binding proteins using binding residues and evolutionary information
inferredcites →https://doi.org/10.1002/pmic.200700597openalex-snapshot
RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information
inferredcites →https://doi.org/10.1002/prot.10569openalex-snapshot
Prediction of α‐turns in proteins using PSI‐BLAST profiles and secondary structure information
inferredcites →https://doi.org/10.1002/prot.20092openalex-snapshot
Prediction of transmembrane regions of β‐barrel proteins using ANN‐ and SVM‐based methods
inferredcites →https://doi.org/10.1002/prot.20630openalex-snapshot
Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure
inferredcites →https://doi.org/10.1002/prot.21078openalex-snapshot
Prediction of continuous B‐cell epitopes in an antigen using recurrent neural network
inferredcites →https://doi.org/10.1002/prot.21677openalex-snapshot
Prediction of RNA binding sites in a protein using SVM and PSSM profile
inferredcites →https://doi.org/10.1007/978-1-4615-0907-3openalex-snapshot
Learning to Classify Text Using Support Vector Machines
inferredcites →https://doi.org/10.1007/978-1-4615-2736-7_9openalex-snapshot
SNNS (Stuttgart Neural Network Simulator)
inferredcites →https://doi.org/10.1007/978-1-4939-3578-9_17openalex-snapshot
Introducing Machine Learning Concepts with WEKA
inferredcites →https://doi.org/10.1007/978-1-4939-7201-2_17openalex-snapshot
In Silico Design of Anticancer Peptides
inferredcites →https://doi.org/10.1007/s00726-009-0381-1openalex-snapshot
Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile
inferredcites →https://doi.org/10.1016/0022-1759(92)90330-vopenalex-snapshot
Calculation of antibody and antigen concentrations from ELISA data using a graphical method
inferredcites →https://doi.org/10.1016/j.ygeno.2015.01.005openalex-snapshot
Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides
inferredcites →https://doi.org/10.1016/s0014-5793(04)00305-9openalex-snapshot
Role of evolutionary information in prediction of aromatic‐backbone NH interactions in proteins
inferredcites →https://doi.org/10.1016/s1672-0229(06)60015-6openalex-snapshot
VICMpred: An SVM-Based Method for the Prediction of Functional Proteins of Gram-Negative Bacteria Using Amino Acid Patterns and Composition
inferredcites →https://doi.org/10.1038/s41598-019-41538-xopenalex-snapshot
NeuroPIpred: a tool to predict, design and scan insect neuropeptides
inferredcites →https://doi.org/10.1038/s41598-019-52134-4openalex-snapshot
Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients
inferredcites →https://doi.org/10.1038/srep01607openalex-snapshot
Computational approach for designing tumor homing peptides
inferredcites →https://doi.org/10.1038/srep12512openalex-snapshot
An in silico platform for predicting, screening and designing of antihypertensive peptides
inferredcites →https://doi.org/10.1038/srep22843openalex-snapshot
A Web Server and Mobile App for Computing Hemolytic Potency of Peptides
inferredcites →https://doi.org/10.1038/srep24782openalex-snapshot
A web-based resource for designing therapeutics against Ebola Virus
inferredcites →https://doi.org/10.1038/srep32713openalex-snapshot
ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis
inferredcites →https://doi.org/10.1038/srep42851openalex-snapshot
Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential
inferredcites →https://doi.org/10.1038/srep44997openalex-snapshot
Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer
inferredcites →https://doi.org/10.1074/jbc.m401932200openalex-snapshot
Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition
inferredcites →https://doi.org/10.1074/jbc.m411789200openalex-snapshot
Support Vector Machine-based Method for Subcellular Localization of Human Proteins Using Amino Acid Compositions, Their Order, and Similarity Search
inferredcites →https://doi.org/10.1074/jbc.m511061200openalex-snapshot
Prediction of Mitochondrial Proteins Using Support Vector Machine and Hidden Markov Model
inferredcites →https://doi.org/10.1089/152791601753204313openalex-snapshot
PDSB: Public Domain Software in Biology
inferredcites →https://doi.org/10.1093/bioinformatics/15.4.327openalex-snapshot
Automated analysis of interatomic contacts in proteins.
inferredcites →https://doi.org/10.1093/bioinformatics/16.4.404openalex-snapshot
The PSIPRED protein structure prediction server
inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1236openalex-snapshot
ProPred: prediction of HLA-DR binding sites
inferredcites →https://doi.org/10.1093/bioinformatics/btg108openalex-snapshot
ProPred1: prediction of promiscuous MHC Class-I binding sites
inferredcites →https://doi.org/10.1093/bioinformatics/bti309openalex-snapshot
PSLpred: prediction of subcellular localization of bacterial proteins
inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/nar/17.16.6763openalex-snapshot
The EMBL Network File Server
inferredcites →https://doi.org/10.1093/nar/gkh001openalex-snapshot
The Rice PIPELINE: a unification tool for plant functional genomics
inferredcites →https://doi.org/10.1093/nar/gkh350openalex-snapshot
ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST
inferredcites →https://doi.org/10.1093/nar/gki351openalex-snapshot
GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors
inferredcites →https://doi.org/10.1093/nar/gki587openalex-snapshot
Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences
inferredcites →https://doi.org/10.1093/nar/gki588openalex-snapshot
BhairPred: prediction of -hairpins in a protein from multiple alignment information using ANN and SVM techniques
inferredcites →https://doi.org/10.1093/nar/gkl343openalex-snapshot
AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
inferredcites →https://doi.org/10.1093/nar/gkq394openalex-snapshot
BioCatalogue: a universal catalogue of web services for the life sciences
inferredcites →https://doi.org/10.1093/protein/gzp016openalex-snapshot
Prediction and classification of chemokines and their receptors
inferredcites →https://doi.org/10.1110/ps.0228903openalex-snapshot
Prediction of β‐turns in proteins from multiple alignment using neural network
inferredcites →https://doi.org/10.1110/ps.03373104openalex-snapshot
Analysis and prediction of affinity of TAP binding peptides using cascade SVM
inferredcites →https://doi.org/10.1155/2013/263952openalex-snapshot
Prediction of IL4 Inducing Peptides
inferredcites →https://doi.org/10.1186/1471-2105-10-22openalex-snapshot
Prediction of nuclear proteins using SVM and HMM models
inferredcites →https://doi.org/10.1186/1471-2105-10-434openalex-snapshot
Identification of ATP binding residues of a protein from its primary sequence
inferredcites →https://doi.org/10.1186/1471-2105-11-160openalex-snapshot
Identification of NAD interacting residues in proteins
inferredcites →https://doi.org/10.1186/1471-2105-11-301openalex-snapshot
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
inferredcites →https://doi.org/10.1186/1471-2105-11-s1-s19openalex-snapshot
AntiBP2: improved version of antibacterial peptide prediction
inferredcites →https://doi.org/10.1186/1471-2105-14-44openalex-snapshot
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information
inferredcites →https://doi.org/10.1186/1471-2105-15-326openalex-snapshot
Prediction of uridine modifications in tRNA sequences
inferredcites →https://doi.org/10.1186/1471-2105-8-263openalex-snapshot
Analysis and prediction of antibacterial peptides
inferredcites →https://doi.org/10.1186/1471-2105-8-337openalex-snapshot
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs
inferredcites →https://doi.org/10.1186/1471-2105-9-201openalex-snapshot
Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
inferredcites →https://doi.org/10.1186/1471-2105-9-503openalex-snapshot
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins
inferredcites →https://doi.org/10.1186/1479-5876-11-74openalex-snapshot
In silico approaches for designing highly effective cell penetrating peptides
inferredcites →https://doi.org/10.1186/1745-6150-8-27openalex-snapshot
Identification of B-cell epitopes in an antigen for inducing specific class of antibodies
inferredcites →https://doi.org/10.1186/1745-6150-8-30openalex-snapshot
Designing of interferon-gamma inducing MHC class-II binders
inferredcites →https://doi.org/10.1186/1745-7580-6-6openalex-snapshot
Identification of conformational B-cell Epitopes in an antigen from its primary sequence
inferredcites →https://doi.org/10.1186/1756-0500-4-237openalex-snapshot
Analysis and prediction of cancerlectins using evolutionary and domain information
inferredcites →https://doi.org/10.1186/s12967-018-1560-1openalex-snapshot
Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants
inferredcites →https://doi.org/10.1371/journal.pone.0023443openalex-snapshot
Designing of Highly Effective Complementary and Mismatch siRNAs for Silencing a Gene
inferredcites →https://doi.org/10.1371/journal.pone.0024039openalex-snapshot
Identification of Mannose Interacting Residues Using Local Composition
inferredcites →https://doi.org/10.1371/journal.pone.0040155openalex-snapshot
GlycoPP: A Webserver for Prediction of N- and O-Glycosites in Prokaryotic Protein Sequences
inferredcites →https://doi.org/10.1371/journal.pone.0062216openalex-snapshot
Improved Method for Linear B-Cell Epitope Prediction Using Antigen’s Primary Sequence
inferredcites →https://doi.org/10.1371/journal.pone.0067008openalex-snapshot
In silico Platform for Prediction of N-, O- and C-Glycosites in Eukaryotic Protein Sequences
inferredcites →https://doi.org/10.1371/journal.pone.0073957openalex-snapshot
In Silico Approach for Predicting Toxicity of Peptides and Proteins
inferredcites →https://doi.org/10.1371/journal.pone.0231629openalex-snapshot
Expression based biomarkers and models to classify early and late-stage samples of Papillary Thyroid Carcinoma
inferredcites →https://doi.org/10.2174/092986607780990046openalex-snapshot
Support Vector Machine Based Prediction of Glutathione S-Transferase Proteins
inferredcites →https://doi.org/10.3233/isb-00348openalex-snapshot
A Machine Learning Based Method for the Prediction of Secretory Proteins Using Amino Acid Composition, Their Order and Similarity-Search
inferredcites →https://doi.org/10.3233/isi-2007-00298openalex-snapshot
BTXpred: Prediction of Bacterial Toxins
inferredcites →https://doi.org/10.3389/fimmu.2018.02280openalex-snapshot
A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria
inferredcites →https://doi.org/10.3389/fphar.2018.00954openalex-snapshot
Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features
inferredcites →https://doi.org/10.3389/fphar.2019.01690openalex-snapshot
SAMbinder: A Web Server for Predicting S-Adenosyl-L-Methionine Binding Residues of a Protein From Its Amino Acid Sequence

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-0716-3239-0_22openalex-snapshot
A Web-Based Method for the Identification of IL6-Based Immunotoxicity in Vaccine Candidates
inferred← citeshttps://doi.org/10.1093/bib/bbaa153openalex-snapshot
AntiCP 2.0: an updated model for predicting anticancer peptides
inferred← citeshttps://doi.org/10.1093/bib/bbaa259openalex-snapshot
Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19
inferred← citeshttps://doi.org/10.1093/bib/bbac192openalex-snapshot
HLAncPred: a method for predicting promiscuous non-classical HLA binding sites
inferred← citeshttps://doi.org/10.1371/journal.pone.0283567openalex-snapshot
Computational method for aromatase-related proteins using machine learning approach
inferred← citeshttps://doi.org/10.3389/fimmu.2021.780610openalex-snapshot
In-Silico Tool for Predicting, Scanning, and Designing Defensins
inferred← citeshttps://doi.org/10.3389/fphar.2019.01690openalex-snapshot
SAMbinder: A Web Server for Predicting S-Adenosyl-L-Methionine Binding Residues of a Protein From Its Amino Acid Sequence
inferred← citeshttps://doi.org/10.3389/fphar.2020.00054openalex-snapshot
A Method for Predicting Hemolytic Potency of Chemically Modified Peptides From Its Structure
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.