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Analysis and prediction of affinity of TAP binding peptides using cascade SVM
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Analysis of the fine specificity of rat, mouse and human TAP peptide transporters
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Two complementary methods for predicting peptides binding major histocompatibility complex molecules
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A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20s proteasome 1 1Edited by R. Huber
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MHC Ligands and Peptide Motifs
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MHC ligands and peptide motifs: first listing
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Prediction of chain flexibility in proteins
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An analysis of protein folding type prediction by seed-propagated sampling and jackknife test
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Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residues
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Conformation of amino acid side-chains in proteins
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A simple method for displaying the hydropathic character of a protein
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Amino acid properties and side-chain orientation in proteins: A cross correlation approach
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Human transporters associated with antigen processing possess a promiscuous peptide-binding site
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A sequential model for peptide binding and transport by the transporters associated with antigen processing
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Function of the transport complex TAP in cellular immune recognition
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The transporter associated with antigen processing TAP: structure and function
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Combining computer algorithms with experimental approaches permits the rapid and accurate identification of T cell epitopes from defined antigens
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Specificity of the proteasome and the TAP transporter
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Using the World Wide Web for predicting CTL epitopes
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Powering the peptide pump: TAP crosstalk with energetic nucleotides
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Substrate specificity of allelic variants of the TAP peptide transporter
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An Introduction to Support Vector Machines and Other Kernel-based Learning Methods
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Toward the Quantitative Prediction of T-Cell Epitopes: CoMFA and CoMSIA Studies of Peptides with Affinity for the Class I MHC Molecule HLA-A*0201
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Structural invariants in protein folding
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Prediction of protein antigenic determinants from amino acid sequences.
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T-cell antigenic sites tend to be amphipathic structures.
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Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries
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Knowledge-based analysis of microarray gene expression data by using support vector machines
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Peptide length and sequence specificity of the mouse TAP1/TAP2 translocator.
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The peptide-binding motif for the human transporter associated with antigen processing.
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Multi-class protein fold recognition using support vector machines and neural networks
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JenPep: a database of quantitative functional peptide data for immunology
inferredcites →https://doi.org/10.1093/bioinformatics/btg055openalex-snapshot
MHCBN: a comprehensive database of MHC binding and non-binding peptides
inferredcites →https://doi.org/10.1093/bioinformatics/btg108openalex-snapshot
ProPred1: prediction of promiscuous MHC Class-I binding sites
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Dynamics of amino acid residues in globular proteins
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Positional flexibilities of amino acid residues in globular proteins
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Antigen processing and presentation‐towards the Millennium
inferredcites →https://doi.org/10.1126/science.4023714openalex-snapshot
Hydrophobicity of Amino Acid Residues in Globular Proteins
inferredcites →https://doi.org/10.1126/science.8266106openalex-snapshot
Peptide Translocation by Variants of the Transporter Associated with Antigen Processing
inferredcites →https://doi.org/10.1146/annurev.bi.53.070184.003115openalex-snapshot
THREE-DIMENSIONAL STRUCTURE OF MEMBRANE AND SURFACE PROTEINS
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The Transporter Associated With Antigen Processing: Function and Implications in Human Diseases
inferredcites →https://doi.org/10.1186/1471-2105-3-25openalex-snapshot
Prediction of MHC class I binding peptides, using SVMHC
inferredcites →https://doi.org/10.17877/de290r-14262openalex-snapshot
Making Large-Scale SVM Learning Practical
inferredcites →https://doi.org/10.3233/isb-00010openalex-snapshot
A Neural Network Model Approach to the Study of Human TAP Transporter
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Prediction of immunodominant helper T cell antigenic sites from the primary sequence.
inferredcites →https://doi.org/10.4049/jimmunol.152.1.163openalex-snapshot
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.
inferredcites →https://doi.org/10.4049/jimmunol.161.2.617openalex-snapshot
Relationship Between Peptide Selectivities of Human Transporters Associated with Antigen Processing and HLA Class I Molecules
inferredcites →https://doi.org/10.4049/jimmunol.171.4.1741openalex-snapshot
Identifying MHC Class I Epitopes by Predicting the TAP Transport Efficiency of Epitope Precursors
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Advances in kernel methods: support vector learning
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1371/journal.pcbi.0020065openalex-snapshot
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
inferred← citeshttps://doi.org/10.1371/journal.pcbi.0020071openalex-snapshot
Immunoinformatics Comes of Age
inferred← citeshttps://doi.org/10.1371/journal.pone.0006965openalex-snapshot
Epitope Mapping of HIV-Specific CD8+ T cells in a Cohort Dominated by Clade A1 Infection
inferred← citeshttps://doi.org/10.1371/journal.pone.0096202openalex-snapshot
Prediction and Analysis of Canonical EF Hand Loop and Qualitative Estimation of Ca2+ Binding Affinity
inferred← citeshttps://doi.org/10.1371/journal.pone.0128194openalex-snapshot
Accurate Prediction of Immunogenic T-Cell Epitopes from Epitope Sequences Using the Genetic Algorithm-Based Ensemble Learning
inferred← citeshttps://doi.org/10.1371/journal.pone.0162808openalex-snapshot
The Value of Online Algorithms to Predict T-Cell Ligands Created by Genetic Variants
inferred← citeshttps://doi.org/10.1517/17460440903242283openalex-snapshot
Towardsin silicodesign of epitope-based vaccines
inferred← citeshttps://doi.org/10.1517/17460441.2.1.19openalex-snapshot
Using databases and data mining in vaccinology
inferred← citeshttps://doi.org/10.1556/amicr.61.2014.3.4openalex-snapshot
Computational vaccinology and epitope vaccine design by immunoinformatics
inferred← citeshttps://doi.org/10.2147/dddt.s67861openalex-snapshot
Design of an epitope-based peptide vaccine against spike protein of human coronavirus: an in silico approach
inferred← citeshttps://doi.org/10.2174/157016310793180602openalex-snapshot
Determination of MHC Binding Peptides and Epitopes from Non- Structural Movement (NSm) Protein of Groundnut Bud Necrosis Virus
inferred← citeshttps://doi.org/10.2174/157016408784911945openalex-snapshot
QSAR and the Prediction of T-Cell Epitopes
inferred← citeshttps://doi.org/10.2174/157340912799218499openalex-snapshot
TAP-Binding Peptides Prediction by QSAR Modeling Based on Amino Acid Structural Information
inferred← citeshttps://doi.org/10.2174/187220811796365716openalex-snapshot
Pre-Clinical and Clinical Aspects of Peptide-based Vaccine Against Human Solid Tumors
inferred← citeshttps://doi.org/10.2174/1875036200802010064openalex-snapshot
ECGpred: Correlation and Prediction of Gene Expression from Nucleotide Sequence
inferred← citeshttps://doi.org/10.21767/2471-8513.100018openalex-snapshot
Prediction of MHC Binding Peptides and Antigenic Peptides from Ascaris lumbricoides
inferred← citeshttps://doi.org/10.24294/ti.v2.i4.891openalex-snapshot
A new design and epitopes analysis for recombinant vaccine against Salmonella typhi by In silico analysis
inferred← citeshttps://doi.org/10.24294/ti.v4.i2.891openalex-snapshot
A New Design and Epitopes Analysis for Recombinant Vaccine against Salmonella typhi by In silico Analysis
inferred← citeshttps://doi.org/10.26479/2018.0403.33openalex-snapshot
Designing of Mlti-epitope Vaccine Based on Vaccine Strains Against Iraqi and Variant 2 Infectious Bronchitis Viral Strains
inferred← citeshttps://doi.org/10.2741/4004openalex-snapshot
Immunogenic epitopes of Hantaviruses' N protein are restricted to conserved regions
inferred← citeshttps://doi.org/10.3233/isb-2010-0435openalex-snapshot
A Computational Approach for Identification of Epitopes in Dengue Virus Envelope Protein: A Step Towards Designing a Universal Dengue Vaccine Targeting Endemic Regions
inferred← citeshttps://doi.org/10.32657/10356/14139openalex-snapshot
Computational discovery of vaccine targets
inferred← citeshttps://doi.org/10.33393/dti.2016.1421openalex-snapshot
Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae Type b)
inferred← citeshttps://doi.org/10.3389/fgene.2019.01141openalex-snapshot
Machine Learning for Cancer Immunotherapies Based on Epitope Recognition by T Cell Receptors
inferred← citeshttps://doi.org/10.3389/fimmu.2017.01430openalex-snapshot
IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response
inferred← citeshttps://doi.org/10.3389/fimmu.2018.01538openalex-snapshot
A Mechanistic Model for Predicting Cell Surface Presentation of Competing Peptides by MHC Class I Molecules
inferred← citeshttps://doi.org/10.3389/fimmu.2019.02731openalex-snapshot
Analysis of Secondary Structure Biases in Naturally Presented HLA-I Ligands
inferred← citeshttps://doi.org/10.3389/fimmu.2022.883989openalex-snapshot
The Importance of Being Presented: Target Validation by Immunopeptidomics for Epitope-Specific Immunotherapies
inferred← citeshttps://doi.org/10.3389/fimmu.2024.1427810openalex-snapshot
Differential modulation of mutant CALR and JAK2 V617F-driven oncogenesis by HLA genotype in myeloproliferative neoplasms
inferred← citeshttps://doi.org/10.3390/cancers12102879openalex-snapshot
Main Strategies for the Identification of Neoantigens
inferred← citeshttps://doi.org/10.3390/sym13030388openalex-snapshot
Predicting Immunogenicity Risk in Biopharmaceuticals
inferred← citeshttps://doi.org/10.4018/978-1-5225-0914-1.ch010openalex-snapshot
Use of Fuzzy Set Theory in DNA Sequence Comparison and Amino Acid Classification
inferred← citeshttps://doi.org/10.4049/jimmunol.173.11.6813openalex-snapshot
Transporter Associated with Antigen Processing Preselection of Peptides Binding to the MHC: A Bioinformatic Evaluation
inferred← citeshttps://doi.org/10.4049/jimmunol.180.5.3210openalex-snapshot
Characterizing the N-Terminal Processing Motif of MHC Class I Ligands
inferred← citeshttps://doi.org/10.4137/bbi.s13402openalex-snapshot
A Computational Assay to Design an Epitope-Based Peptide Vaccine against Saint Louis Encephalitis Virus
inferred← citeshttps://doi.org/10.4137/dti.s38458openalex-snapshot
Immunoinformatics Approach in Designing Epitope-based Vaccine against Meningitis-inducing Bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae Type b)
inferred← citeshttps://doi.org/10.4172/1747-0862.1000150openalex-snapshot
Prediction of MHC Class Binding Peptide and High Affinity TAP Binders to Design Synthetic Peptide Vaccine of Long Neurotoxin 3 from Naja Naja
inferred← citeshttps://doi.org/10.4172/2153-0602.1000198openalex-snapshot
Computational Approach to Identify the Major Histocompatibility Complex Binding Antigenic Peptides from 'Ascariasis'
inferred← citeshttps://doi.org/10.4172/2153-0769.1000113openalex-snapshot
Prediction of Major Histocompatibility Complex Binding Peptides and Epitopes from Fatty-Acid-Binding Protein of the Human Blood Fluke Schistosoma Japonicum
inferred← citeshttps://doi.org/10.4172/2155-9597.1000193openalex-snapshot
Identification of Antigenic Determinants, Solvent Accessibility and MHC Binders of Peb1a from Campylobacter jejuni
inferred← citeshttps://doi.org/10.4172/2157-7560.1000169openalex-snapshot
Prediction of Wuchereria Bancrofti Troponin Antigenic Peptides: Application in Synthetic Vaccine Design to Counter Lymphatic Filariasis
inferred← citeshttps://doi.org/10.4172/2157-7609.1000201openalex-snapshot
Prediction of Antigenic MHC Peptide Binders and TAP Binder of COX1 Protein through In Silico Approach
inferred← citeshttps://doi.org/10.4172/2161-0444.1000322openalex-snapshot
“Cytochrome B”- Analysis of Hydrophobicity, Surface Accessibility, Antigenicity and Prediction of MHC I and MHC II Binders from Dracunculiasis
inferred← citeshttps://doi.org/10.4172/2168-9652.1000136openalex-snapshot
Prediction of Antigenic Peptide and MHC Binder from ITX-3 Tegenaria agrestis: Current Approach for Synthetic Vaccine Development
inferred← citeshttps://doi.org/10.4172/2169-0138.1000115openalex-snapshot
Identification of Binding Affinity of TAP Peptides for Development of Fragment based Vaccine from Long neurotoxin 2 [N. naja]
inferred← citeshttps://doi.org/10.4172/2169-0138.1000119openalex-snapshot
Information of Surface Accessibility of the Peptide Fragments of Coat Protein from Alfalfa mosaic virus (AMV) at the Physicochemical and Immunochemical Levels
inferred← citeshttps://doi.org/10.52458/9789391842109.2022.ch18.eb.asuopenalex-snapshot
T CELLS EPITOPE PREDICTIONS
inferred← citeshttps://doi.org/10.5772/26933openalex-snapshot
Immunotherapy of Renal Cell Carcinoma – From Antigen Identification to Patient Treatment
inferred← citeshttps://doi.org/10.5812/ijcm.7743openalex-snapshot
Designing a Chimeric Vaccine Against Colorectal Cancer
inferred← citeshttps://doi.org/10.5815/ijisa.2015.12.08openalex-snapshot
Heart Diseases Diagnosis Using Neural Networks Arbitration
inferred← citeshttps://doi.org/10.5897/ajb2009.000-9508openalex-snapshot
Prediction of antigenic epitopes and MHC binders of neurotoxin alpha-KTx 3.8 from Mesobuthus tamulus sindicus.
inferred← citeshttps://doi.org/10.6026/97320630013366openalex-snapshot
In Silico Validation of D7 Salivary Protein-derived B- and T-cell Epitopes of Aedes aegypti as Potential Vaccine to Prevent Transmission of Flaviviruses and Togaviruses to Humans
inferred← citeshttps://doi.org/10.6084/m9.figshare.12134853openalex-snapshot
Additional file 1 of An immunoinformatic approach driven by experimental proteomics: in silico design of a subunit candidate vaccine targeting secretory proteins of Leishmania donovani amastigotes
inferred← citeshttps://doi.org/10.6084/m9.figshare.12134892openalex-snapshot
Additional file 5 of An immunoinformatic approach driven by experimental proteomics: in silico design of a subunit candidate vaccine targeting secretory proteins of Leishmania donovani amastigotes
inferred← citeshttps://doi.org/10.7324/japs.2021.110604openalex-snapshot
Immunoinformatics studies and design of breast cancer multiepitope peptide vaccines: Diversity analysis approach
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