On the public citation graph

The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere

0 signed · 103 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142735.ima03bs21openalex-snapshot
Trypan Blue Exclusion Test of Cell Viability
inferredcites →https://doi.org/10.1007/1-4020-4538-7_16openalex-snapshot
Plant pathogenic Ralstonia species
inferredcites →https://doi.org/10.1007/s002480000087openalex-snapshot
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
inferredcites →https://doi.org/10.1007/s13199-009-0049-3openalex-snapshot
A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales
inferredcites →https://doi.org/10.1016/0092-8674(94)90217-8openalex-snapshot
Programmed cell death in plants: A pathogen-triggered response activated coordinately with multiple defense functions
inferredcites →https://doi.org/10.1016/j.cell.2014.09.053openalex-snapshot
Human Genetics Shape the Gut Microbiome
inferredcites →https://doi.org/10.1016/j.chom.2018.06.011openalex-snapshot
Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales
inferredcites →https://doi.org/10.1016/j.mimet.2005.06.001openalex-snapshot
A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: Application for DNA fragment transfer between chromosomes and plasmid transformation
inferredcites →https://doi.org/10.1016/j.pbi.2014.03.011openalex-snapshot
Inside plant: biotrophic strategies to modulate host immunity and metabolism
inferredcites →https://doi.org/10.1016/j.plantsci.2003.10.025openalex-snapshot
Plant growth-promoting bacteria that confer resistance to water stress in tomatoes and peppers
inferredcites →https://doi.org/10.1016/j.tplants.2006.03.005openalex-snapshot
Licensed to kill: the lifestyle of a necrotrophic plant pathogen
inferredcites →https://doi.org/10.1016/j.wace.2015.08.001openalex-snapshot
Temperature extremes: Effect on plant growth and development
inferredcites →https://doi.org/10.1038/nature11237openalex-snapshot
Defining the core Arabidopsis thaliana root microbiome
inferredcites →https://doi.org/10.1038/nature24460openalex-snapshot
Quantitative microbiome profiling links gut community variation to microbial load
inferredcites →https://doi.org/10.1038/ncomms12151openalex-snapshot
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
inferredcites →https://doi.org/10.1038/ncomms6320openalex-snapshot
Genome-wide association study of Arabidopsis thaliana leaf microbial community
inferredcites →https://doi.org/10.1038/s41396-020-0665-8openalex-snapshot
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves
inferredcites →https://doi.org/10.1038/s41467-017-01544-xopenalex-snapshot
Assessing species biomass contributions in microbial communities via metaproteomics
inferredcites →https://doi.org/10.1038/s41559-019-1063-3openalex-snapshot
Root microbiota assembly and adaptive differentiation among European Arabidopsis populations
inferredcites →https://doi.org/10.1038/srep16498openalex-snapshot
Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification
inferredcites →https://doi.org/10.1039/c5np00013kopenalex-snapshot
Natural products in soil microbe interactions and evolution
inferredcites →https://doi.org/10.1039/c7np00062fopenalex-snapshot
Microbial small molecules – weapons of plant subversion
inferredcites →https://doi.org/10.1046/j.1365-313x.1993.04050813.xopenalex-snapshot
Identification of a disease resistance locus in Arabidopsis that is functionally homologous to the RPG1 locus of soybean
inferredcites →https://doi.org/10.1073/pnas.1216057111openalex-snapshot
Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest
inferredcites →https://doi.org/10.1080/01621459.1961.10482090openalex-snapshot
Multiple Comparisons Among Means
inferredcites →https://doi.org/10.1086/315215openalex-snapshot
Dengue Viremia Titer, Antibody Response Pattern, and Virus Serotype Correlate with Disease Severity
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/nar/29.1.102openalex-snapshot
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
inferredcites →https://doi.org/10.1094/mpmi-02-14-0032-ropenalex-snapshot
Pseudomonas syringae Evades Host Immunity by Degrading Flagellin Monomers with Alkaline Protease AprA
inferredcites →https://doi.org/10.1094/mpmi-18-0583openalex-snapshot
Identification of Arabidopsis Loci Required for Susceptibility to the Downy Mildew Pathogen Hyaloperonospora parasitica
inferredcites →https://doi.org/10.1094/mpmi-20-12-1512openalex-snapshot
Salicylic Acid and Jasmonic Acid Signaling Defense Pathways Reduce Natural Bacterial Diversity on Arabidopsis thaliana
inferredcites →https://doi.org/10.1094/mpmi-6-582openalex-snapshot
Recognition of the Avirulence GeneavrBfromPseudomonas syringaepv.glycineabyArabidopsis thaliana
inferredcites →https://doi.org/10.1094/mpmi.2002.15.12.1195openalex-snapshot
Pseudomonas viridiflava and P. syringae—Natural Pathogens of Arabidopsis thaliana
inferredcites →https://doi.org/10.1098/rstb.2007.2042openalex-snapshot
Quorum sensing, virulence and secondary metabolite production in plant soft-rotting bacteria
inferredcites →https://doi.org/10.1101/181198openalex-snapshot
Plant genetic effects on microbial hubs impact fitness across field trials
inferredcites →https://doi.org/10.1101/gr.210641.116openalex-snapshot
Centrifuge: rapid and sensitive classification of metagenomic sequences
inferredcites →https://doi.org/10.1101/gr.5969107openalex-snapshot
MEGAN analysis of metagenomic data
inferredcites →https://doi.org/10.1104/pp.111.189217openalex-snapshot
Phytosterols Play a Key Role in Plant Innate Immunity against Bacterial Pathogens by Regulating Nutrient Efflux into the Apoplast
inferredcites →https://doi.org/10.1105/tpc.2.5.437openalex-snapshot
Arabidopsis Is Susceptible to Infection by a Downy Mildew Fungus
inferredcites →https://doi.org/10.1105/tpc.8.11.2033openalex-snapshot
Characterization of eds1, a mutation in Arabidopsis suppressing resistance to Peronospora parasitica specified by several different RPP genes.
inferredcites →https://doi.org/10.1111/j.1462-5822.2006.00833.xopenalex-snapshot
Cell biology of plant?oomycete interactions
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.02959.xopenalex-snapshot
Quantitative fitness effects of infection in a gene‐for‐gene system
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01157.xopenalex-snapshot
MALADAPTATION IN WILD POPULATIONS OF THE GENERALIST PLANT PATHOGEN PSEUDOMONAS SYRINGAE
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/nph.12411openalex-snapshot
Five phylogenetically close rice SWEET genes confer TAL effector‐mediated susceptibility to Xanthomonas oryzae pv. oryzae
inferredcites →https://doi.org/10.1111/nph.13850openalex-snapshot
Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer
inferredcites →https://doi.org/10.1111/nph.14517openalex-snapshot
Diverse mechanisms of resistance to Pseudomonas syringae in a thousand natural accessions of Arabidopsis thaliana
inferredcites →https://doi.org/10.1128/aem.00133-11openalex-snapshot
Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System
inferredcites →https://doi.org/10.1128/aem.01938-17openalex-snapshot
Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape
inferredcites →https://doi.org/10.1128/aem.51.2.323-327.1986openalex-snapshot
Generation and Characterization of Tn 5 Insertion Mutations in Pseudomonas syringae pv. tomato
inferredcites →https://doi.org/10.1128/aem.62.2.625-630.1996openalex-snapshot
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
inferredcites →https://doi.org/10.1128/ec.00155-12openalex-snapshot
Dynamics and Innovations within Oomycete Genomes: Insights into Biology, Pathology, and Evolution
inferredcites →https://doi.org/10.1128/mbio.00682-13openalex-snapshot
Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities
inferredcites →https://doi.org/10.1128/mmbr.00019-17openalex-snapshot
The Divided Bacterial Genome: Structure, Function, and Evolution
inferredcites →https://doi.org/10.1146/annurev-phyto-080508-094422openalex-snapshot
Hyaloperonospora arabidopsidis as a Pathogen Model
inferredcites →https://doi.org/10.1146/annurev-phyto-080516-035623openalex-snapshot
Interplay Between Innate Immunity and the Plant Microbiota
inferredcites →https://doi.org/10.1146/annurev.phyto.43.040204.135923openalex-snapshot
Contrasting Mechanisms of Defense Against Biotrophic and Necrotrophic Pathogens
inferredcites →https://doi.org/10.1186/1471-2180-10-206openalex-snapshot
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
inferredcites →https://doi.org/10.1186/1746-4811-4-27openalex-snapshot
A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence
inferredcites →https://doi.org/10.1186/s12575-015-0020-zopenalex-snapshot
The diversity of fungal genome
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s40168-016-0175-0openalex-snapshot
Adjusting microbiome profiles for differences in microbial load by spike-in bacteria
inferredcites →https://doi.org/10.1371/journal.pbio.1002352openalex-snapshot
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
inferredcites →https://doi.org/10.1371/journal.pcbi.1002687openalex-snapshot
Inferring Correlation Networks from Genomic Survey Data
inferredcites →https://doi.org/10.1371/journal.pcbi.1003531openalex-snapshot
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
inferredcites →https://doi.org/10.1371/journal.pgen.1007155openalex-snapshot
The rate and potential relevance of new mutations in a colonizing plant lineage
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0184195openalex-snapshot
Similar levels of gene content variation observed for Pseudomonas syringae populations extracted from single and multiple host species
inferredcites →https://doi.org/10.1371/journal.ppat.1007740openalex-snapshot
Microbiota-mediated disease resistance in plants
inferredcites →https://doi.org/10.1534/genetics.109.112383openalex-snapshot
Impact of Initial Pathogen Density on Resistance and Tolerance in a Polymorphic Disease Resistance Gene System in Arabidopsis thaliana
inferredcites →https://doi.org/10.1890/0012-9658(2001)082[0290:fmmtcd]2.0.co;2openalex-snapshot
FITTING MULTIVARIATE MODELS TO COMMUNITY DATA: A COMMENT ON DISTANCE-BASED REDUNDANCY ANALYSIS
inferredcites →https://doi.org/10.2478/intag-2013-0017openalex-snapshot
Effect of drought and heat stresses on plant growth and yield: a review
inferredcites →https://doi.org/10.7554/elife.46923.027openalex-snapshot
Author response: Consistent and correctable bias in metagenomic sequencing experiments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.envres.2021.111715openalex-snapshot
Distribution of the potential pathogenic Alternaria on plant leaves determines foliar fungal communities around the disease spot
inferred← citeshttps://doi.org/10.1016/j.pbi.2020.02.010openalex-snapshot
Bacterial dispersal and biogeography as underappreciated influences on phytobiomes
inferred← citeshttps://doi.org/10.1038/s41396-020-0665-8openalex-snapshot
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves
inferred← citeshttps://doi.org/10.1038/s41396-021-01077-8openalex-snapshot
The coral symbiont Candidatus Aquarickettsia is variably abundant in threatened Caribbean acroporids and transmitted horizontally
inferred← citeshttps://doi.org/10.1038/s41396-021-01168-6openalex-snapshot
Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms
inferred← citeshttps://doi.org/10.1038/s41467-021-27479-yopenalex-snapshot
Genetic determinants of endophytism in the Arabidopsis root mycobiome
inferred← citeshttps://doi.org/10.1038/s41467-023-43793-zopenalex-snapshot
Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning
inferred← citeshttps://doi.org/10.1038/s41477-021-00920-2openalex-snapshot
Coordination of microbe–host homeostasis by crosstalk with plant innate immunity
inferred← citeshttps://doi.org/10.1038/s41564-021-00929-5openalex-snapshot
The plant NADPH oxidase RBOHD is required for microbiota homeostasis in leaves
inferred← citeshttps://doi.org/10.1038/s41564-024-01773-zopenalex-snapshot
Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought
inferred← citeshttps://doi.org/10.1038/s41598-023-30916-1openalex-snapshot
Mock community as an in situ positive control for amplicon sequencing of microbiotas from the same ecosystem
inferred← citeshttps://doi.org/10.1073/pnas.2211881119openalex-snapshot
Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere
inferred← citeshttps://doi.org/10.1093/jxb/eraa417openalex-snapshot
Shaping the leaf microbiota: plant–microbe–microbe interactions
inferred← citeshttps://doi.org/10.1101/2020.02.21.958033openalex-snapshot
Microbial association networks give relevant insights into plant pathobiomes
inferred← citeshttps://doi.org/10.1101/2020.05.19.103937openalex-snapshot
Host-associated microbe PCR (hamPCR): accessing new biology through convenient measurement of both microbial load and community composition
inferred← citeshttps://doi.org/10.1101/2022.04.08.487684openalex-snapshot
Drought selection on Arabidopsis populations and their microbiomes
inferred← citeshttps://doi.org/10.1101/2022.05.20.492878openalex-snapshot
The abundances and occurrences of foliar microbes are poorly predicted by variation in plant traits and abiotic conditions
inferred← citeshttps://doi.org/10.1101/2022.08.19.504330openalex-snapshot
Implications of taxonomic bias for microbial differential-abundance analysis
inferred← citeshttps://doi.org/10.1101/2024.06.10.598336openalex-snapshot
Immunity and bacterial recruitment in plant leaves are parallel processes that together shape sensitivity to temperature stress
inferred← citeshttps://doi.org/10.1111/1462-2920.15638openalex-snapshot
13 C ‐chloromethane incubations provide evidence for novel bacterial chloromethane degraders in a living tree fern
inferred← citeshttps://doi.org/10.1111/1755-0998.13247openalex-snapshot
The quest for absolute abundance: The use of internal standards for DNA‐based community ecology
inferred← citeshttps://doi.org/10.1111/mec.17482openalex-snapshot
Regional diversity and leaf microbiome interactions of the fungal maize pathogen Exserohilum turcicum in Switzerland: A metagenomic analysis
inferred← citeshttps://doi.org/10.1111/nph.19241openalex-snapshot
The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava
inferred← citeshttps://doi.org/10.1128/msystems.00294-21openalex-snapshot
Characterizing Microbiomes via Sequencing of Marker Loci: Techniques To Improve Throughput, Account for Cross-Contamination, and Reduce Cost
inferred← citeshttps://doi.org/10.1128/msystems.01339-23openalex-snapshot
Gardnerella diversity and ecology in pregnancy and preterm birth
inferred← citeshttps://doi.org/10.1146/annurev-arplant-102820-032704openalex-snapshot
Phyllosphere Microbiome
inferred← citeshttps://doi.org/10.1146/annurev-micro-022620-014327openalex-snapshot
The Plant Microbiome: From Ecology to Reductionism and Beyond
inferred← citeshttps://doi.org/10.1186/s13007-021-00782-xopenalex-snapshot
Leaf infiltration in plant science: old method, new possibilities
inferred← citeshttps://doi.org/10.33073/pjm-2022-038openalex-snapshot
Structural and Dynamic Analysis of Leaf-Associated Fungal Community of Walnut Leaves Infected by Leaf Spot Disease Based Illumina High-Throughput Sequencing Technology
inferred← citeshttps://doi.org/10.7554/elife.66186openalex-snapshot
Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.