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Plant genetic effects on microbial hubs impact fitness across field trials
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi1110s43openalex-snapshot
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1007/s002480000087openalex-snapshot
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot
AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
inferredcites →https://doi.org/10.1016/j.cell.2014.09.053openalex-snapshot
Human Genetics Shape the Gut Microbiome
inferredcites →https://doi.org/10.1016/j.cell.2016.05.063openalex-snapshot
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.chom.2018.06.011openalex-snapshot
Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales
inferredcites →https://doi.org/10.1016/j.pbi.2017.04.018openalex-snapshot
Understanding and exploiting plant beneficial microbes
inferredcites →https://doi.org/10.1016/j.tplants.2016.06.005openalex-snapshot
Bidirectional Interaction between Phyllospheric Microbiotas and Plant Volatile Emissions
inferredcites →https://doi.org/10.1016/s0031-9422(00)00316-2openalex-snapshot
The chemical diversity and distribution of glucosinolates and isothiocyanates among plants
inferredcites →https://doi.org/10.1016/s0168-6496(00)00109-4openalex-snapshot
Impact of cultivation on characterisation of species composition of soil bacterial communities
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/nature08800openalex-snapshot
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
inferredcites →https://doi.org/10.1038/nature11336openalex-snapshot
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
inferredcites →https://doi.org/10.1038/nature16192openalex-snapshot
Functional overlap of the Arabidopsis leaf and root microbiota
inferredcites →https://doi.org/10.1038/nature21417openalex-snapshot
Root microbiota drive direct integration of phosphate stress and immunity
inferredcites →https://doi.org/10.1038/nature23292openalex-snapshot
The evolution of the host microbiome as an ecosystem on a leash
inferredcites →https://doi.org/10.1038/ncomms12151openalex-snapshot
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
inferredcites →https://doi.org/10.1038/ncomms6320openalex-snapshot
Genome-wide association study of Arabidopsis thaliana leaf microbial community
inferredcites →https://doi.org/10.1038/ng.1042openalex-snapshot
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel
inferredcites →https://doi.org/10.1038/ng.2310openalex-snapshot
Genome-wide efficient mixed-model analysis for association studies
inferredcites →https://doi.org/10.1038/ng.2678openalex-snapshot
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
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inferredcites →https://doi.org/10.1038/ng.823openalex-snapshot
Genome partitioning of genetic variation for complex traits using common SNPs
inferredcites →https://doi.org/10.1038/s41396-018-0152-7openalex-snapshot
In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/s41396-021-00993-zopenalex-snapshot
Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome
inferredcites →https://doi.org/10.1038/s41437-019-0235-xopenalex-snapshot
A local score approach improves GWAS resolution and detects minor QTL: application to Medicago truncatula quantitative disease resistance to multiple Aphanomyces euteiches isolates
inferredcites →https://doi.org/10.1038/s41598-019-40055-1openalex-snapshot
Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
inferredcites →https://doi.org/10.1038/srep39403openalex-snapshot
The isolation and characterization of resident yeasts from the phylloplane of Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.1302837110openalex-snapshot
Diversity and heritability of the maize rhizosphere microbiome under field conditions
inferredcites →https://doi.org/10.1073/pnas.1505765112openalex-snapshot
Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping
inferredcites →https://doi.org/10.1080/14888386.2017.1366873openalex-snapshot
Sustainable agriculture for biodiversity, biodiversity for sustainable agriculture
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq046openalex-snapshot
EBImage—an R package for image processing with applications to cellular phenotypes
inferredcites →https://doi.org/10.1093/bioinformatics/btr087openalex-snapshot
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
inferredcites →https://doi.org/10.1093/bioinformatics/btv098openalex-snapshot
Sambamba: fast processing of NGS alignment formats
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1094/mpmi-12-18-0327-ropenalex-snapshot
Indole Derivatives Maintain the Status Quo Between Beneficial Biofilms and Their Plant Hosts
inferredcites →https://doi.org/10.1094/pbiomes-06-19-0031-ropenalex-snapshot
Influence of Environment and Host Plant Genotype on the Structure and Diversity of the Brassica napus Seed Microbiota
inferredcites →https://doi.org/10.1101/gr.128124.111openalex-snapshot
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
inferredcites →https://doi.org/10.1104/pp.102.017236openalex-snapshot
AraCyc: A Biochemical Pathway Database for Arabidopsis
inferredcites →https://doi.org/10.1104/pp.16.01942openalex-snapshot
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants
inferredcites →https://doi.org/10.1111/j.1365-294x.1993.tb00005.xopenalex-snapshot
ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00294.xopenalex-snapshot
High-throughput culturing of fungi from plant litter by a dilution-to-extinction technique
inferredcites →https://doi.org/10.1111/j.1654-1103.2003.tb02228.xopenalex-snapshot
VEGAN, a package of R functions for community ecology
inferredcites →https://doi.org/10.1111/mec.12481openalex-snapshot
Towards a unified paradigm for sequence‐based identification of fungi
inferredcites →https://doi.org/10.1111/pbi.12279openalex-snapshot
Understanding and engineering beneficial plant–microbe interactions: plant growth promotion in energy crops
inferredcites →https://doi.org/10.1126/science.167.3915.165openalex-snapshot
Biometry. The Principles and Practice of Statistics in Biological Research. Robert R. Sokal and F. James Rohlf. xxii + 778 pp., illus. $15. Biology Series. Statistical Tables. F. James Rohlf and Robert R. Sokal. xiV + 258 pp. Cloth, $7.50; paper, $2.75. Freeman, San Francisco, 1969
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Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota
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inferredcites →https://doi.org/10.1128/aem.01991-16openalex-snapshot
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inferredcites →https://doi.org/10.1128/mbio.02723-20openalex-snapshot
Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development
inferredcites →https://doi.org/10.1186/s12859-017-1571-6openalex-snapshot
Avoiding the pitfalls of gene set enrichment analysis with SetRank
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1186/s40168-019-0668-8openalex-snapshot
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
inferredcites →https://doi.org/10.1371/journal.pbio.1002352openalex-snapshot
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
inferredcites →https://doi.org/10.1371/journal.pcbi.1004226openalex-snapshot
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
inferredcites →https://doi.org/10.1371/journal.pgen.0030004openalex-snapshot
An Arabidopsis Example of Association Mapping in Structured Samples
inferredcites →https://doi.org/10.1371/journal.pgen.1000940openalex-snapshot
Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature
inferredcites →https://doi.org/10.1371/journal.pone.0010209openalex-snapshot
Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1515/sagmb-2014-0077openalex-snapshot
Weighted Kolmogorov Smirnov testing: an alternative for Gene Set Enrichment Analysis
inferredcites →https://doi.org/10.1534/genetics.166.1.449openalex-snapshot
The Dominance of the Herbicide Resistance Cost in Several Arabidopsis thaliana Mutant Lines
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.1890/0012-9658(2003)084[0511:caopca]2.0.co;2openalex-snapshot
CANONICAL ANALYSIS OF PRINCIPAL COORDINATES: A USEFUL METHOD OF CONSTRAINED ORDINATION FOR ECOLOGY
inferredcites →https://doi.org/10.2307/1270335openalex-snapshot
The Statistical Analysis of Compositional Data
inferredcites →https://doi.org/10.2307/2403308openalex-snapshot
The Principles and Practice of Statistics in Biological Research.
inferredcites →https://doi.org/10.3389/fmicb.2016.01234openalex-snapshot
Bacterial Communities: Interactions to Scale
inferredcites →https://doi.org/10.3389/fmicb.2016.01611openalex-snapshot
Exploring Relationships between Host Genome and Microbiome: New Insights from Genome-Wide Association Studies
inferredcites →https://doi.org/10.3732/apps.1200236openalex-snapshot
Enhancing PCR amplification of DNA from recalcitrant plant specimens using a trehalose‐based additive
inferredcites →https://doi.org/10.48550/arxiv.2006.14781openalex-snapshot
The huge Package for High-dimensional Undirected Graph Estimation in R
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
inferredcites →https://doi.org/10.7717/peerj.593openalex-snapshot
Swarm: robust and fast clustering method for amplicon-based studies
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/b978-0-443-18694-3.00003-1openalex-snapshot
Witches’ broom disease of birch
inferred← citeshttps://doi.org/10.1016/j.copbio.2021.05.007openalex-snapshot
Assessing the potential to harness the microbiome through plant genetics
inferred← citeshttps://doi.org/10.1016/j.copbio.2021.06.016openalex-snapshot
Integration of omics data to unravel root microbiome recruitment
inferred← citeshttps://doi.org/10.1073/pnas.2201285119openalex-snapshot
Plant genetic effects on microbial hubs impact host fitness in repeated field trials
inferred← citeshttps://doi.org/10.1098/rstb.2019.0590openalex-snapshot
Symbiosis and stress: how plant microbiomes affect host evolution
inferred← citeshttps://doi.org/10.1101/594028openalex-snapshot
A novel phyllosphere resident Protomyces species that interacts with the Arabidopsis immune system
inferred← citeshttps://doi.org/10.1101/828814openalex-snapshot
The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere
inferred← citeshttps://doi.org/10.1111/1462-2920.14031openalex-snapshot
Field study reveals core plant microbiota and relative importance of their drivers
inferred← citeshttps://doi.org/10.1111/1462-2920.16037openalex-snapshot
Distinct Taphrina strains from the phyllosphere of birch exhibiting a range of witches' broom disease symptoms
inferred← citeshttps://doi.org/10.1111/nph.15220openalex-snapshot
Rapid evolution in the tug‐of‐war between microbes and plants
inferred← citeshttps://doi.org/10.1146/annurev-arplant-080620-114342openalex-snapshot
Extension of Plant Phenotypes by the Foliar Microbiome
inferred← citeshttps://doi.org/10.1186/s43008-021-00054-2openalex-snapshot
A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001681openalex-snapshot
Host genotype controls ecological change in the leaf fungal microbiome
inferred← citeshttps://doi.org/10.17352/ojeb.000046openalex-snapshot
The Seed Microbiome: Microbial Hashes for Plant Wellbeing
inferred← citeshttps://doi.org/10.2174/1389202921999200603165934openalex-snapshot
Insights on Engineered Microbes in Sustainable Agriculture: Biotechnological Developments and Future Prospects
inferred← citeshttps://doi.org/10.3389/fmicb.2021.737616openalex-snapshot
Seed-Transmitted Bacteria and Fungi Dominate Juvenile Plant Microbiomes
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