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Early-life gut dysbiosis linked to mass mortality in ostriches

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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ggplot2: Elegant Graphics for Data Analysis

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Modeling Survival Data: Extending the Cox Model

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The Family Porphyromonadaceae

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Clinical importance ofBilophila wadsworthia

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The Gut as the Motor of Multiple Organ Dysfunction in Critical Illness

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Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae

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Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis

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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

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Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis

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Clostridium butyricum : from beneficial to a new emerging pathogen

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Pathobionts of the gastrointestinal microbiota and inflammatory disease

inferredcites →https://doi.org/10.1016/j.gecco.2016.06.004openalex-snapshot

Using the gut microbiota as a novel tool for examining colobine primate GI health

inferredcites →https://doi.org/10.1016/j.jhep.2016.11.008openalex-snapshot

Fecal microbiota manipulation prevents dysbiosis and alcohol-induced liver injury in mice

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The development of ratite production through continued research

inferredcites →https://doi.org/10.1038/ismej.2013.185openalex-snapshot

Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

inferredcites →https://doi.org/10.1038/ismej.2016.114openalex-snapshot

Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis

inferredcites →https://doi.org/10.1038/nature12820openalex-snapshot

Diet rapidly and reproducibly alters the human gut microbiome

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Bayesian community-wide culture-independent microbial source tracking

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QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1038/nrmicro.2017.58openalex-snapshot

The resilience of the intestinal microbiota influences health and disease

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Gut biogeography of the bacterial microbiota

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Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

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Ginsenosides Rb3 and Rd reduce polyps formation while reinstate the dysbiotic gut microbiota and the intestinal microenvironment in ApcMin/+ mice

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Animals in a bacterial world, a new imperative for the life sciences

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Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice

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Clostridium sordellii Infection: Epidemiology, Clinical Findings, and Current Perspectives on Diagnosis and Treatment

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1097/00007611-198012000-00033openalex-snapshot

Clostridium paraputrificum Sepsis in Sickle Cell Anemia

inferredcites →https://doi.org/10.1097/00007611-198802000-00037openalex-snapshot

Necrotizing Enterocolitis Associated With Clostridium paraputrificum Septicemia

inferredcites →https://doi.org/10.1099/ijsem.0.000874openalex-snapshot

Paraclostridium benzoelyticum gen. nov., sp. nov., isolated from marine sediment and reclassification of Clostridium bifermentans as Paraclostridium bifermentans comb. nov. Proposal of a new genus Paeniclostridium gen. nov. to accommodate Clostridium sordellii and Clostridium ghonii

inferredcites →https://doi.org/10.1111/1755-0998.12744openalex-snapshot

Measuring the gut microbiome in birds: Comparison of faecal and cloacal sampling

inferredcites →https://doi.org/10.1111/cmi.12308openalex-snapshot

Defining dysbiosis and its influence on host immunity and disease

inferredcites →https://doi.org/10.1111/mec.15087openalex-snapshot

Major shifts in gut microbiota during development and its relationship to growth in ostriches

inferredcites →https://doi.org/10.1126/science.1179721openalex-snapshot

Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5

inferredcites →https://doi.org/10.1126/science.aad9379openalex-snapshot

Cross-species comparisons of host genetic associations with the microbiome

inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

inferredcites →https://doi.org/10.1128/jcm.00845-13openalex-snapshot

Intestinal Dysbiosis and Depletion of Butyrogenic Bacteria in Clostridium difficile Infection and Nosocomial Diarrhea

inferredcites →https://doi.org/10.1128/msystems.00132-17openalex-snapshot

Direct PCR Offers a Fast and Reliable Alternative to Conventional DNA Isolation Methods for Gut Microbiomes

inferredcites →https://doi.org/10.1128/msystems.00191-16openalex-snapshot

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

inferredcites →https://doi.org/10.1136/gutjnl-2013-304833openalex-snapshot

A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis

inferredcites →https://doi.org/10.1152/ajpgi.00152.2012openalex-snapshot

Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation

inferredcites →https://doi.org/10.1152/physrev.00045.2009openalex-snapshot

Gut Microbiota in Health and Disease

inferredcites →https://doi.org/10.1177/104063879300500422openalex-snapshot

Diagnosis of Enteritis and Enterotoxemia due to Clostridium Difficile in Captive Ostriches (Struthio Camelus)

inferredcites →https://doi.org/10.1186/1471-2180-11-73openalex-snapshot

Community analysis of bacteria colonizing intestinal tissue of neonates with necrotizing enterocolitis

inferredcites →https://doi.org/10.1186/gb-2012-13-9-r79openalex-snapshot

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s40168-016-0181-2openalex-snapshot

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals

inferredcites →https://doi.org/10.1203/01.pdr.0000180538.13142.84openalex-snapshot

Evidence for Clostridial Implication in Necrotizing Enterocolitis through Bacterial Fermentation in a Gnotobiotic Quail Model

inferredcites →https://doi.org/10.1371/journal.pone.0051907openalex-snapshot

The Fecal Microbiome in Dogs with Acute Diarrhea and Idiopathic Inflammatory Bowel Disease

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0146162openalex-snapshot

Pglyrp-Regulated Gut Microflora Prevotella falsenii, Parabacteroides distasonis and Bacteroides eggerthii Enhance and Alistipes finegoldii Attenuates Colitis in Mice

inferredcites →https://doi.org/10.20506/rst.19.2.1235openalex-snapshot

Ostrich diseases

inferredcites →https://doi.org/10.2217/fmb-2016-0130openalex-snapshot

Roseburia Spp.: A Marker of Health?

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3382/ps/pev084openalex-snapshot

Bacterial enteritis in ostrich (Struthio Camelus) chicks in the Western Cape Province, South Africa

inferredcites →https://doi.org/10.3389/fvets.2017.00139openalex-snapshot

Comparison of the Luminal and Mucosa-Associated Microbiota in the Colon of Pigs with and without Swine Dysentery

inferredcites →https://doi.org/10.3748/wjg.v21.i37.10487openalex-snapshot

Microbiome as mediator: Do systemic infections start in the gut?

inferredcites →https://doi.org/10.4102/jsava.v72i4.652openalex-snapshot

Factors related to high levels of ostrich chick mortality from hatching to 90 days of age in an intensive rearing system

inferredcites →https://doi.org/10.4161/gmic.19320openalex-snapshot

The role of gut microbiota in immune homeostasis and autoimmunity

inferredcites →https://doi.org/10.4161/gmic.19344openalex-snapshot

Systemic antibody responses to gut microbes in health and disease

inferredcites →https://doi.org/10.4161/gmic.26945openalex-snapshot

Intestinal microbiome of poultry and its interaction with host and diet

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.psj.2025.105629openalex-snapshot

Nutrient requirements and feeding management for ostrich during breeding and production: A comprehensive review

inferred← citeshttps://doi.org/10.2478/ats-2020-0016openalex-snapshot

Gastric impaction: an important health and welfare issue of growing ostriches

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