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Functional channels in mature E. coli colonies

https://doi.org/10.1101/851428
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Computational Modeling of Synthetic Microbial Biofilms
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Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations
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Morphological optimization for access to dual oxidants in biofilms
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Architectural transitions in Vibrio cholerae biofilms at single-cell resolution
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Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging
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Cell morphology drives spatial patterning in microbial communities
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A growing microcolony can survive and support persistent propagation of virulent phages
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Giving structure to the biofilm matrix: an overview of individual strategies and emerging common themes
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Biofouling: lessons from nature
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Penetration of Oxygen into Bacterial Colonies
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Oxygen Profiles in, and in the Agar Beneath, Colonies of Bacillus Cereus, Staphylococcus Albus and Escherichia Coli
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Healthcare-associated infections, medical devices and biofilms: risk, tolerance and control
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An orphan cbb 3 -type cytochrome oxidase subunit supports Pseudomonas aeruginosa biofilm growth and virulence
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Mini‐Tn 7 transposons for site‐specific tagging of bacteria with fluorescent proteins
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Application of the Mesolens for subcellular resolution imaging of intact larval and whole adult Drosophila
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High-resolution three-dimensional imaging of biofilm development using optical coherence tomography
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Coupling between distant biofilms and emergence of nutrient time-sharing
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Mesoscopic Energy Minimization Drives Pseudomonas aeruginosa Biofilm Morphologies and Consequent Stratification of Antibiotic Activity Based on Cell Metabolism
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Liquid Flow in Biofilm Systems
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Hypothesis for the Role of Nutrient Starvation in Biofilm Detachment
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Cell Death in Pseudomonas aeruginosa Biofilm Development
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Diffusion in Biofilms
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Microanatomy at Cellular Resolution and Spatial Order of Physiological Differentiation in a Bacterial Biofilm
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Bacterial Biofilms in Nature and Disease
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Bacterial social interactions drive the emergence of differential spatial colony structures
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A new approach by optical coherence tomography for elucidating biofilm formation by emergent Candida species
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Self-organization of swimmers drives long-range fluid transport in bacterial colonies.
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Bacterial Colonies in Solid Media and Foods: A Review on Their Growth and Interactions with the Micro-Environment
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A novel optical microscope for imaging large embryos and tissue volumes with sub-cellular resolution throughout
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An orphan cbb3-type cytochrome oxidase subunit supports Pseudomonas aeruginosa biofilm growth and virulence
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