On the public citation graph

Persistence of a novel regeneration-associated transitional cell state in pulmonary fibrosis

https://doi.org/10.1101/855155
0 signed · 100 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/dvg.20397openalex-snapshot
A CK19CreERT knockin mouse line allows for conditional DNA recombination in epithelial cells in multiple endodermal organs
inferredcites →https://doi.org/10.1002/path.4808openalex-snapshot
The extracellular matrix – the under‐recognized element in lung disease?
inferredcites →https://doi.org/10.1007/s00441-016-2541-4openalex-snapshot
Lung morphometry: the link between structure and function
inferredcites →https://doi.org/10.1016/j.amjms.2019.02.008openalex-snapshot
The Aging Lung and Idiopathic Pulmonary Fibrosis
inferredcites →https://doi.org/10.1016/j.ccr.2005.07.004openalex-snapshot
Early inactivation of p53 tumor suppressor gene cooperating with NF1 loss induces malignant astrocytoma
inferredcites →https://doi.org/10.1016/j.ccr.2013.04.020openalex-snapshot
Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming
inferredcites →https://doi.org/10.1016/j.ceb.2016.01.011openalex-snapshot
Squish and squeeze — the nucleus as a physical barrier during migration in confined environments
inferredcites →https://doi.org/10.1016/j.cell.2010.11.049openalex-snapshot
Dynamics between Stem Cells, Niche, and Progeny in the Hair Follicle
inferredcites →https://doi.org/10.1016/j.cell.2013.10.041openalex-snapshot
Senescence Is a Developmental Mechanism that Contributes to Embryonic Growth and Patterning
inferredcites →https://doi.org/10.1016/j.cell.2014.02.013openalex-snapshot
Nice Neighborhood: Emerging Concepts of the Stem Cell Niche
inferredcites →https://doi.org/10.1016/j.cell.2015.05.002openalex-snapshot
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
inferredcites →https://doi.org/10.1016/j.cell.2017.07.034openalex-snapshot
Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung
inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot
Comprehensive Integration of Single-Cell Data
inferredcites →https://doi.org/10.1016/j.cell.2019.10.005openalex-snapshot
Cellular Senescence: Defining a Path Forward
inferredcites →https://doi.org/10.1016/j.celrep.2016.11.001openalex-snapshot
Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation
inferredcites →https://doi.org/10.1016/j.celrep.2016.11.007openalex-snapshot
p53 Regulates Progenitor Cell Quiescence and Differentiation in the Airway
inferredcites →https://doi.org/10.1016/j.celrep.2019.02.046openalex-snapshot
Dlk1-Mediated Temporal Regulation of Notch Signaling Is Required for Differentiation of Alveolar Type II to Type I Cells during Repair
inferredcites →https://doi.org/10.1016/j.cub.2003.10.063openalex-snapshot
Regulation of Stem Cell Maintenance and Transit Amplifying Cell Proliferation by TGF-β Signaling in Drosophila Spermatogenesis
inferredcites →https://doi.org/10.1016/j.devcel.2018.01.008openalex-snapshot
The Strength of Mechanical Forces Determines the Differentiation of Alveolar Epithelial Cells
inferredcites →https://doi.org/10.1016/j.gendis.2017.12.005openalex-snapshot
SOX4 contributes to TGF-β-induced epithelial–mesenchymal transition and stem cell characteristics of gastric cancer cells
inferredcites →https://doi.org/10.1016/j.matbio.2018.03.005openalex-snapshot
Extracellular matrix in lung development, homeostasis and disease
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.molcel.2010.09.019openalex-snapshot
The DNA Damage Response: Making It Safe to Play with Knives
inferredcites →https://doi.org/10.1016/j.molcel.2015.11.003openalex-snapshot
A Multiplexed System for Quantitative Comparisons of Chromatin Landscapes
inferredcites →https://doi.org/10.1016/j.stem.2011.04.003openalex-snapshot
Notch-Dependent Differentiation of Adult Airway Basal Stem Cells
inferredcites →https://doi.org/10.1016/j.stem.2014.07.012openalex-snapshot
Repair and Regeneration of the Respiratory System: Complexity, Plasticity, and Mechanisms of Lung Stem Cell Function
inferredcites →https://doi.org/10.1016/j.stemcr.2019.02.013openalex-snapshot
IL-1 and TNFα Contribute to the Inflammatory Niche to Enhance Alveolar Regeneration
inferredcites →https://doi.org/10.1016/s0140-6736(12)61144-1openalex-snapshot
New cellular and molecular mechanisms of lung injury and fibrosis in idiopathic pulmonary fibrosis
inferredcites →https://doi.org/10.1038/cddis.2015.206openalex-snapshot
Chop deficiency prevents UUO-induced renal fibrosis by attenuating fibrotic signals originated from Hmgb1/TLR4/NFκB/IL-1β signaling
inferredcites →https://doi.org/10.1038/nature12930openalex-snapshot
Alveolar progenitor and stem cells in lung development, renewal and cancer
inferredcites →https://doi.org/10.1038/nature25786openalex-snapshot
Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor
inferredcites →https://doi.org/10.1038/ncb2581openalex-snapshot
Dll1+ secretory progenitor cells revert to stem cells upon crypt damage
inferredcites →https://doi.org/10.1038/ncb3580openalex-snapshot
Local lung hypoxia determines epithelial fate decisions during alveolar regeneration
inferredcites →https://doi.org/10.1038/nmat3339openalex-snapshot
Extracellular-matrix tethering regulates stem-cell fate
inferredcites →https://doi.org/10.1038/nmeth762openalex-snapshot
A Cre-inducible diphtheria toxin receptor mediates cell lineage ablation after toxin administration
inferredcites →https://doi.org/10.1038/nn.2467openalex-snapshot
A robust and high-throughput Cre reporting and characterization system for the whole mouse brain
inferredcites →https://doi.org/10.1038/nrm3060openalex-snapshot
DNA damage response in adult stem cells: pathways and consequences
inferredcites →https://doi.org/10.1038/nrm3823openalex-snapshot
Cellular senescence: from physiology to pathology
inferredcites →https://doi.org/10.1038/nrm3904openalex-snapshot
Remodelling the extracellular matrix in development and disease
inferredcites →https://doi.org/10.1038/s41556-019-0357-7openalex-snapshot
Cellular organization and biology of the respiratory system
inferredcites →https://doi.org/10.1038/s41580-019-0141-3openalex-snapshot
Cellular crosstalk in the development and regeneration of the respiratory system
inferredcites →https://doi.org/10.1038/s41586-018-0414-6openalex-snapshot
RNA velocity of single cells
inferredcites →https://doi.org/10.1038/sj.onc.1202778openalex-snapshot
Regulation of the human poly(ADP-ribose) polymerase promoter by the ETS transcription factor
inferredcites →https://doi.org/10.1038/sj.onc.1205896openalex-snapshot
ATF3 induction following DNA damage is regulated by distinct signaling pathways and over-expression of ATF3 protein suppresses cells growth
inferredcites →https://doi.org/10.1073/pnas.0810147106openalex-snapshot
Induction of SOX4 by DNA damage is critical for p53 stabilization and function
inferredcites →https://doi.org/10.1073/pnas.1117988108openalex-snapshot
Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition
inferredcites →https://doi.org/10.1093/bioinformatics/btn615openalex-snapshot
AmiGO: online access to ontology and annotation data
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/jmcb/mju046openalex-snapshot
Hippo/Yap signaling controls epithelial progenitor cell proliferation and differentiation in the embryonic and adult lung
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/gkw257openalex-snapshot
deepTools2: a next generation web server for deep-sequencing data analysis
inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
inferredcites →https://doi.org/10.1101/580498openalex-snapshot
Restored alveolar epithelial differentiation and reversed human lung fibrosis upon Notch inhibition
inferredcites →https://doi.org/10.1101/705244openalex-snapshot
Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration
inferredcites →https://doi.org/10.1111/j.1445-5994.1984.tb04343.xopenalex-snapshot
ALVEOLAR TYPE I AND TYPE II CELLS
inferredcites →https://doi.org/10.1126/sciadv.aba1972openalex-snapshot
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
inferredcites →https://doi.org/10.1126/sciadv.aba1983openalex-snapshot
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
inferredcites →https://doi.org/10.1126/science.aad7611openalex-snapshot
ESCRT III repairs nuclear envelope ruptures during cell migration to limit DNA damage and cell death
inferredcites →https://doi.org/10.1126/science.aam6603openalex-snapshot
Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells
inferredcites →https://doi.org/10.1136/thoraxjnl-2014-206084openalex-snapshot
Accelerated ageing of the lung in COPD: new concepts
inferredcites →https://doi.org/10.1152/japplphysiol.01100.2009openalex-snapshot
Assessment of air space size characteristics by intercept (chord) measurement: an accurate and efficient stereological approach
inferredcites →https://doi.org/10.1158/0008-5472.can-12-1045openalex-snapshot
SOX4 Induces Epithelial–Mesenchymal Transition and Contributes to Breast Cancer Progression
inferredcites →https://doi.org/10.1158/0008-5472.can-17-0337openalex-snapshot
Variant Review with the Integrative Genomics Viewer
inferredcites →https://doi.org/10.1158/1538-7445.am2012-4597openalex-snapshot
Abstract 4597: Telomere maintenance mechanism and expression in colorectal cancer
inferredcites →https://doi.org/10.1164/rccm.201409-1663oeopenalex-snapshot
On the Tricks Alveolar Epithelial Cells Play to Make a Good Lung
inferredcites →https://doi.org/10.1165/rcmb.2018-0061edopenalex-snapshot
Cellular Senescence in Chronic Obstructive Pulmonary Disease: Multifaceted and Multifunctional
inferredcites →https://doi.org/10.1165/rcmb.2018-0125ocopenalex-snapshot
Ager-CreER T2 : A New Genetic Tool for Studying Lung Alveolar Development, Homeostasis, and Repair
inferredcites →https://doi.org/10.1172/jci.insight.123637openalex-snapshot
Single-cell RNA sequencing identifies TGF-β as a key regenerative cue following LPS-induced lung injury
inferredcites →https://doi.org/10.1172/jci125014openalex-snapshot
Yap/Taz regulate alveolar regeneration and resolution of lung inflammation
inferredcites →https://doi.org/10.1172/jci68782openalex-snapshot
Type 2 alveolar cells are stem cells in adult lung
inferredcites →https://doi.org/10.1177/1947601911410224openalex-snapshot
p53, Stem Cells, and Reprogramming: Tumor Suppression beyond Guarding the Genome
inferredcites →https://doi.org/10.1182/blood-2007-08-078147openalex-snapshot
Stem-cell ecology and stem cells in motion
inferredcites →https://doi.org/10.1183/13993003.01994-2017openalex-snapshot
The DNA repair transcriptome in severe COPD
inferredcites →https://doi.org/10.1186/1471-2350-14-93openalex-snapshot
Evaluation of DNA damage in COPD patients and its correlation with polymorphisms in repair genes
inferredcites →https://doi.org/10.1186/1755-1536-5-s1-s24openalex-snapshot
CTGF is a central mediator of tissue remodeling and fibrosis and its inhibition can reverse the process of fibrosis
inferredcites →https://doi.org/10.1186/s12859-016-1284-2openalex-snapshot
Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers
inferredcites →https://doi.org/10.1186/s12931-018-0838-4openalex-snapshot
A role for telomere length and chromosomal damage in idiopathic pulmonary fibrosis
inferredcites →https://doi.org/10.1242/dev.143784openalex-snapshot
Plasticity in the lung: making and breaking cell identity
inferredcites →https://doi.org/10.1242/dev.163014openalex-snapshot
Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation
inferredcites →https://doi.org/10.1242/dmm.010736openalex-snapshot
Genetic studies provide clues on the pathogenesis of idiopathic pulmonary fibrosis
inferredcites →https://doi.org/10.1371/journal.pone.0029423openalex-snapshot
Activity-Induced Remodeling of Olfactory Bulb Microcircuits Revealed by Monosynaptic Tracing
inferredcites →https://doi.org/10.1371/journal.pone.0030562openalex-snapshot
CCN2/Connective Tissue Growth Factor Is Essential for Pericyte Adhesion and Endothelial Basement Membrane Formation during Angiogenesis
inferredcites →https://doi.org/10.15252/embj.201488017openalex-snapshot
Mapping early fate determination in Lgr5+ crypt stem cells using a novel Ki67‐RFP allele
inferredcites →https://doi.org/10.4049/jimmunol.178.10.6504openalex-snapshot
Airway Epithelium Controls Lung Inflammation and Injury through the NF-κB Pathway
inferredcites →https://doi.org/10.4049/jimmunol.180.2.881openalex-snapshot
Alveolar Epithelial Type II Cells Induce T Cell Tolerance to Specific Antigen
inferredcites →https://doi.org/10.7555/jbr.27.20130030openalex-snapshot
The MDM2-p53 pathway revisited

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.stem.2020.06.020openalex-snapshot
Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration
inferred← citeshttps://doi.org/10.1038/s41467-020-17358-3openalex-snapshot
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis
inferred← citeshttps://doi.org/10.1038/s41467-020-18979-4openalex-snapshot
mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline
inferred← citeshttps://doi.org/10.1039/d2bm00827kopenalex-snapshot
Alveolar epithelial cells and microenvironmental stiffness synergistically drive fibroblast activation in three-dimensional hydrogel lung models
inferred← citeshttps://doi.org/10.1101/2020.06.06.136713openalex-snapshot
Human alveolar Type 2 epithelium transdifferentiates into metaplastic KRT5+ basal cells during alveolar repair
inferred← citeshttps://doi.org/10.1101/2020.06.14.151324openalex-snapshot
Reconstitution of Alveolar Regeneration via novel DATPs by Inflammatory Niches
inferred← citeshttps://doi.org/10.1111/joim.13075openalex-snapshot
Airway organoids as models of human disease
inferred← citeshttps://doi.org/10.1126/sciadv.aba1972openalex-snapshot
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
inferred← citeshttps://doi.org/10.3389/fmed.2020.606462openalex-snapshot
Senescence in Pulmonary Fibrosis: Between Aging and Exposure
inferred← citeshttps://doi.org/10.3390/ijms21093188openalex-snapshot
Mechanisms of ATII-to-ATI Cell Differentiation during Lung Regeneration
inferred← citeshttps://doi.org/10.7554/elife.64430openalex-snapshot
GSK3 inhibition rescues growth and telomere dysfunction in dyskeratosis congenita iPSC-derived type II alveolar epithelial cells
inferred← citeshttps://doi.org/10.7554/elife.85415openalex-snapshot
Reciprocal interactions between alveolar progenitor dysfunction and aging promote lung fibrosis
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.