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On the use of calcium deconvolution algorithms in practical contexts

https://doi.org/10.1101/871137
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00521-009-0307-6openalex-snapshot
A comparison of binless spike train measures
inferredcites →https://doi.org/10.1016/j.cell.2015.09.034openalex-snapshot
Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.conb.2015.03.016openalex-snapshot
Comprehensive imaging of cortical networks
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Computational processing of neural recordings from calcium imaging data
inferredcites →https://doi.org/10.1016/j.neuron.2009.08.009openalex-snapshot
Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data
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Neural Activity in Barrel Cortex Underlying Vibrissa-Based Object Localization in Mice
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Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior
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A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior
inferredcites →https://doi.org/10.1016/j.neuron.2015.11.037openalex-snapshot
Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data
inferredcites →https://doi.org/10.1016/j.neuron.2016.04.014openalex-snapshot
Benchmarking Spike Rate Inference in Population Calcium Imaging
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Balancing the Robustness and Efficiency of Odor Representations during Learning
inferredcites →https://doi.org/10.1016/j.neuron.2017.08.015openalex-snapshot
The Spatiotemporal Organization of the Striatum Encodes Action Space
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The Spatiotemporal Organization of the Striatum Encodes Action Space
inferredcites →https://doi.org/10.1016/j.pneurobio.2012.09.004openalex-snapshot
Population-wide distributions of neural activity during perceptual decision-making
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Principal component analysis of neuronal ensemble activity reveals multidimensional somatosensory representations
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Robust research needs many lines of evidence
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Choice-specific sequences in parietal cortex during a virtual-navigation decision task
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Multiple dynamic representations in the motor cortex during sensorimotor learning
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Neural population dynamics during reaching
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Ultrasensitive fluorescent proteins for imaging neuronal activity
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Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo
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Whole-brain functional imaging at cellular resolution using light-sheet microscopy
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Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging
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Dimensionality reduction for large-scale neural recordings
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Improving data quality in neuronal population recordings
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Multiple neural spike train data analysis: state-of-the-art and future challenges
inferredcites →https://doi.org/10.1038/s41586-019-1346-5openalex-snapshot
High-dimensional geometry of population responses in visual cortex
inferredcites →https://doi.org/10.1038/s41586-020-2130-2openalex-snapshot
Fundamental bounds on the fidelity of sensory cortical coding
inferredcites →https://doi.org/10.1038/s41592-019-0435-6openalex-snapshot
High-performance calcium sensors for imaging activity in neuronal populations and microcompartments
inferredcites →https://doi.org/10.1038/s41598-018-21640-2openalex-snapshot
FISSA: A neuropil decontamination toolbox for calcium imaging signals
inferredcites →https://doi.org/10.1101/061507openalex-snapshot
Suite2p: beyond 10,000 neurons with standard two-photon microscopy
inferredcites →https://doi.org/10.1101/156786openalex-snapshot
Robustness of spike deconvolution for calcium imaging of neural spiking
inferredcites →https://doi.org/10.1101/479055openalex-snapshot
Accurate action potential inference from a calcium sensor protein through biophysical modeling:
inferredcites →https://doi.org/10.1101/834895openalex-snapshot
The impact of reporter kinetics on the interpretation of data gathered with fluorescent reporters
inferredcites →https://doi.org/10.1117/1.nph.1.2.025008openalex-snapshot
Fast calcium sensor proteins for monitoring neural activity
inferredcites →https://doi.org/10.1126/science.1103736openalex-snapshot
Optical Imaging of Neuronal Populations During Decision-Making
inferredcites →https://doi.org/10.1126/science.aav7893openalex-snapshot
Spontaneous behaviors drive multidimensional, brainwide activity
inferredcites →https://doi.org/10.1145/1143844.1143874openalex-snapshot
The relationship between Precision-Recall and ROC curves
inferredcites →https://doi.org/10.1152/jn.01073.2009openalex-snapshot
Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging
inferredcites →https://doi.org/10.1152/jn.1996.76.2.1310openalex-snapshot
Nature and precision of temporal coding in visual cortex: a metric-space analysis
inferredcites →https://doi.org/10.1162/neco_a_01114openalex-snapshot
CosMIC: A Consistent Metric for Spike Inference from Calcium Imaging
inferredcites →https://doi.org/10.1162/netn_a_00020openalex-snapshot
Dynamical networks: Finding, measuring, and tracking neural population activity using network science
inferredcites →https://doi.org/10.1214/18-aoas1162openalex-snapshot
Exact spike train inference via $\ell_{0}$ optimization
inferredcites →https://doi.org/10.1214/ss/1009213285openalex-snapshot
inferredcites →https://doi.org/10.1214/ss/1009213286openalex-snapshot
Interval Estimation for a Binomial Proportion
inferredcites →https://doi.org/10.1371/journal.pcbi.1005423openalex-snapshot
Fast online deconvolution of calcium imaging data
inferredcites →https://doi.org/10.1371/journal.pcbi.1006157openalex-snapshot
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
inferredcites →https://doi.org/10.1371/journal.pcbi.1008198openalex-snapshot
A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology
inferredcites →https://doi.org/10.1371/journal.pone.0108697openalex-snapshot
Thy1-GCaMP6 Transgenic Mice for Neuronal Population Imaging In Vivo
inferredcites →https://doi.org/10.1523/jneurosci.3339-17.2018openalex-snapshot
Robustness of Spike Deconvolution for Neuronal Calcium Imaging
inferredcites →https://doi.org/10.3389/fncir.2013.00201openalex-snapshot
Inference of neuronal network spike dynamics and topology from calcium imaging data
inferredcites →https://doi.org/10.3389/fninf.2014.00080openalex-snapshot
SIMA: Python software for analysis of dynamic fluorescence imaging data
inferredcites →https://doi.org/10.7554/elife.06619openalex-snapshot
Low-noise encoding of active touch by layer 4 in the somatosensory cortex
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Demixed principal component analysis of neural population data
inferredcites →https://doi.org/10.7554/elife.12727openalex-snapshot
Sensitive red protein calcium indicators for imaging neural activity
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CaImAn an open source tool for scalable calcium imaging data analysis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Cortical acetylcholine dynamics are predicted by cholinergic axon activity and behavior state
inferred← citeshttps://doi.org/10.1016/j.cub.2020.10.059openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jneumeth.2021.109431openalex-snapshot
To deconvolve, or not to deconvolve: Inferences of neuronal activities using calcium imaging data
inferred← citeshttps://doi.org/10.1016/j.xpro.2023.102760openalex-snapshot
Protocol to image and analyze hippocampal network dynamics in non-anesthetized mouse pups
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Functional neuroimaging as a catalyst for integrated neuroscience
inferred← citeshttps://doi.org/10.1038/s41593-021-00895-5openalex-snapshot
A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging
inferred← citeshttps://doi.org/10.1088/1741-2552/ac8765openalex-snapshot
Inferring monosynaptic connections from paired dendritic spine Ca 2+ imaging and large-scale recording of extracellular spiking
inferred← citeshttps://doi.org/10.1093/jmicro/dfab028openalex-snapshot
Miniature microscopes for manipulating and recording in vivo brain activity
inferred← citeshttps://doi.org/10.1101/2020.08.31.272450openalex-snapshot
Database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging
inferred← citeshttps://doi.org/10.1101/2021.03.05.434105openalex-snapshot
Parallel inference of hierarchical latent dynamics in two-photon calcium imaging of neuronal populations
inferred← citeshttps://doi.org/10.1117/1.nph.9.4.041402openalex-snapshot
Review of data processing of functional optical microscopy for neuroscience
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1011667openalex-snapshot
Modeling the diverse effects of divisive normalization on noise correlations
inferred← citeshttps://doi.org/10.1523/eneuro.0038-20.2020openalex-snapshot
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization
inferred← citeshttps://doi.org/10.1523/eneuro.0266-21.2021openalex-snapshot
Information Theoretic Approaches to Deciphering the Neural Code with Functional Fluorescence Imaging
inferred← citeshttps://doi.org/10.1523/jneurosci.3176-20.2021openalex-snapshot
Reliable Sensory Processing in Mouse Visual Cortex through Cooperative Interactions between Somatostatin and Parvalbumin Interneurons
inferred← citeshttps://doi.org/10.31083/jin26242openalex-snapshot
The Impact of Optical Undersampling on the Ca2+ Signal Resolution in Ca2+ Imaging of Spontaneous Neuronal Activity
inferred← citeshttps://doi.org/10.48550/arxiv.2103.02163openalex-snapshot
To Deconvolve, or Not to Deconvolve: Inferences of Neuronal Activities using Calcium Imaging Data
inferred← citeshttps://doi.org/10.64898/2026.02.12.705646openalex-snapshot
Stimulus-Driven Thermodynamic Shifts and Geometric Reorganization in Mouse Primary Visual Cortex
inferred← citeshttps://doi.org/10.70675/a8322da1z46a2z4e19zbbd3zffe1e9d8cc19openalex-snapshot
Evolution de l'activité de la région CA1 de l'hippocampe pendant le développement postnatal précoce
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Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
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