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High constitutive activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins

https://doi.org/10.1101/gad.293134.116

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Perspectives on the RNA polymerase II core promoter

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ETS transcription factors and regulation of immunity

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The “initiator” as a transcription control element

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Latent Enhancers Activated by Stimulation in Differentiated Cells

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Dynamic Gene Regulatory Networks Drive Hematopoietic Specification and Differentiation

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Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

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Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages

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Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription

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Coregulation of Transcription Factor Binding and Nucleosome Occupancy through DNA Features of Mammalian Enhancers

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Integrator Regulates Transcriptional Initiation and Pause Release following Activation

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Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination

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Structural Basis of Core Promoter Recognition in a Primitive Eukaryote

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RUNX1 reshapes the epigenetic landscape at the onset of haematopoiesis

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Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals

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Widespread transcription at neuronal activity-regulated enhancers

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

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GREAT improves functional interpretation of cis-regulatory regions

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Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes

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Transcriptional enhancers: from properties to genome-wide predictions

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Perspectives on the RNA polymerase II core promoter

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

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New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB

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A dual cis -regulatory code links IRF8 to constitutive and inducible gene expression in macrophages

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A core promoter element downstream of the TATA box that is recognized by TFIIB

inferredcites →https://doi.org/10.1101/gr.138776.112openalex-snapshot

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

inferredcites →https://doi.org/10.1101/gr.1953904openalex-snapshot

Clustering of DNA Sequences in Human Promoters

inferredcites →https://doi.org/10.1101/gr.6831208openalex-snapshot

A code for transcription initiation in mammalian genomes

inferredcites →https://doi.org/10.1101/sqb.1978.042.01.105openalex-snapshot

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Chromatin state dynamics during blood formation

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Suboptimization of developmental enhancers

inferredcites →https://doi.org/10.1128/mcb.17.6.2973openalex-snapshot

Accurate Positioning of RNA Polymerase II on a Natural TATA-Less Promoter Is Independent of TATA-Binding-Protein-Associated Factors and Initiator-Binding Proteins

inferredcites →https://doi.org/10.1146/annurev.biochem.79.081507.103945openalex-snapshot

Genomic and Biochemical Insights into the Specificity of ETS Transcription Factors

inferredcites →https://doi.org/10.1186/gb-2006-7-7-r53openalex-snapshot

Comparative genomics of Drosophila and human core promoters

inferredcites →https://doi.org/10.1186/gb-2006-7-8-r78openalex-snapshot

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

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The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1

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Additional file 1 of Mechanisms of enhancer action: the known and the unknown

inferred← citeshttps://doi.org/10.6084/m9.figshare.16625174openalex-snapshot

Additional file 1 of Mapping the evolving landscape of super-enhancers during cell differentiation

inferred← citeshttps://doi.org/10.6084/m9.figshare.16625177openalex-snapshot

Additional file 2 of Mapping the evolving landscape of super-enhancers during cell differentiation

inferred← citeshttps://doi.org/10.6084/m9.figshare.16625180openalex-snapshot

Additional file 3 of Mapping the evolving landscape of super-enhancers during cell differentiation

inferred← citeshttps://doi.org/10.6084/m9.figshare.16625183openalex-snapshot

Additional file 4 of Mapping the evolving landscape of super-enhancers during cell differentiation

inferred← citeshttps://doi.org/10.6084/m9.figshare.16625186openalex-snapshot

Additional file 5 of Mapping the evolving landscape of super-enhancers during cell differentiation

inferred← citeshttps://doi.org/10.6084/m9.figshare.16625189openalex-snapshot

Additional file 6 of Mapping the evolving landscape of super-enhancers during cell differentiation

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301383openalex-snapshot

Additional file 10 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301386openalex-snapshot

Additional file 11 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301389openalex-snapshot

Additional file 12 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301392openalex-snapshot

Additional file 1 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301395openalex-snapshot

Additional file 2 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301398openalex-snapshot

Additional file 3 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301401openalex-snapshot

Additional file 4 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301404openalex-snapshot

Additional file 5 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301407openalex-snapshot

Additional file 6 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301410openalex-snapshot

Additional file 7 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301413openalex-snapshot

Additional file 8 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.21301416openalex-snapshot

Additional file 9 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1

inferred← citeshttps://doi.org/10.6084/m9.figshare.26721306openalex-snapshot

Additional file 1 of Enhancer selectivity across cell types delineates three functionally distinct enhancer-promoter regulation patterns

inferred← citeshttps://doi.org/10.6084/m9.figshare.26721309openalex-snapshot

Additional file 2 of Enhancer selectivity across cell types delineates three functionally distinct enhancer-promoter regulation patterns

inferred← citeshttps://doi.org/10.7554/elife.80943openalex-snapshot

Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

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