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The Bioperl Toolkit: Perl Modules for the Life Sciences
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/jmbi.1997.0951openalex-snapshot
Prediction of complete gene structures in human genomic DNA
inferredcites →https://doi.org/10.1006/jmbi.2000.4042openalex-snapshot
T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1073/pnas.042692499openalex-snapshot
On the sequencing of the human genome
inferredcites →https://doi.org/10.1073/pnas.85.8.2444openalex-snapshot
Improved tools for biological sequence comparison.
inferredcites →https://doi.org/10.1093/bioinformatics/17.2.115openalex-snapshot
XML, bioinformatics and data integration
inferredcites →https://doi.org/10.1093/bioinformatics/18.10.1398openalex-snapshot
Genquire: genome annotation browser/editor
inferredcites →https://doi.org/10.1093/bioinformatics/18.8.1135openalex-snapshot
TFBS: Computational framework for transcription factor binding site analysis
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/29.1.165openalex-snapshot
RHdb: the Radiation Hybrid database
inferredcites →https://doi.org/10.1093/nar/30.1.13openalex-snapshot
Database resources of the National Center for Biotechnology Information: 2002 update
inferredcites →https://doi.org/10.1093/nar/30.1.38openalex-snapshot
The Ensembl genome database project
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1186/1471-2105-2-7openalex-snapshot
The Distributed Annotation System
inferredcites →https://doi.org/10.1186/gb-2000-1-5-research0010openalex-snapshot
Accessing and distributing EMBL data using CORBA (common object request broker architecture)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1007/s13258-018-0751-8openalex-snapshot
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
inferred← citeshttps://doi.org/10.1007/s13258-022-01264-7openalex-snapshot
Identification of conserved regions from 230,163 SARS-CoV-2 genomes and their use in diagnostic PCR primer design
inferred← citeshttps://doi.org/10.1007/s42976-022-00308-8openalex-snapshot
Unveiling the characteristics of popcorn by genome re-sequencing and integrating the ESTs and proteome data
inferred← citeshttps://doi.org/10.1016/b978-0-08-088504-9.00052-0openalex-snapshot
Metabolomics – The Combination of Analytical Biochemistry, Biology, and Informatics
inferred← citeshttps://doi.org/10.1016/b978-0-12-394290-6.00014-8openalex-snapshot
Structure–Function Analyses of Plant Type III Polyketide Synthases
inferred← citeshttps://doi.org/10.1016/b978-0-12-396967-5.00009-8openalex-snapshot
Bioinformatics for Cancer Genomics
inferred← citeshttps://doi.org/10.1016/b978-0-12-800140-0.00004-2openalex-snapshot
Bioinformatics Tools in Epigenomics Studies
inferred← citeshttps://doi.org/10.1016/b978-0-12-809411-2.00014-3openalex-snapshot
Handling Big Data in Precision Medicine
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20365-8openalex-snapshot
Computing Languages for Bioinformatics: BioPerl
inferred← citeshttps://doi.org/10.1016/b978-0-12-821477-0.00024-6openalex-snapshot
Engineering of microbial cell factories for omics-guided production of medically important biomolecules
inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00010-5openalex-snapshot
Computing Languages for Bioinformatics: BioPerl
inferred← citeshttps://doi.org/10.1016/b978-0-444-64046-8.00027-6openalex-snapshot
Metabolomics – The Combination of Analytical Biochemistry, Biology, and Informatics
inferred← citeshttps://doi.org/10.1016/j.aam.2021.102252openalex-snapshot
Combinatorial perspectives on Dollo-k characters in phylogenetics
inferred← citeshttps://doi.org/10.1016/j.abb.2015.11.037openalex-snapshot
Fungal cobalamin-independent methionine synthase: Insights from the model organism, Neurospora crassa
inferred← citeshttps://doi.org/10.1016/j.bbrc.2004.06.177openalex-snapshot
Dioxin-responsive AHRE-II gene battery: identification by phylogenetic footprinting
inferred← citeshttps://doi.org/10.1016/j.bbrc.2019.02.087openalex-snapshot
PML modulates H3.3 targeting to telomeric and centromeric repeats in mouse fibroblasts
inferred← citeshttps://doi.org/10.1016/j.biosystems.2006.09.039openalex-snapshot
Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species
inferred← citeshttps://doi.org/10.1016/j.biosystems.2023.105021openalex-snapshot
Effect of single nucleotide polymorphisms on the structure of long noncoding RNAs and their interaction with RNA binding proteins
inferred← citeshttps://doi.org/10.1016/j.cbd.2009.03.001openalex-snapshot
Bioinformatic analysis of expressed sequence tags from grass shrimp Palaemonetes pugio exposed to environmental stressors
inferred← citeshttps://doi.org/10.1016/j.cbd.2010.03.003openalex-snapshot
The transcriptome of the early life history stages of the California Sea Hare Aplysia californica
inferred← citeshttps://doi.org/10.1016/j.cbd.2011.07.004openalex-snapshot
Shift in chicken intestinal gene association networks after infection with Salmonella
inferred← citeshttps://doi.org/10.1016/j.cbd.2013.09.003openalex-snapshot
Transcriptome responses in the rectal gland of fed and fasted spiny dogfish shark (Squalus acanthias) determined by suppression subtractive hybridization
inferred← citeshttps://doi.org/10.1016/j.cbd.2024.101403openalex-snapshot
Genome-wide identification and expression patterns of uridine diphosphate (UDP)-glycosyltransferase genes in the brown planthopper, Nilaparvata lugens
inferred← citeshttps://doi.org/10.1016/j.ccell.2020.09.002openalex-snapshot
Next-Generation Analytics for Omics Data
inferred← citeshttps://doi.org/10.1016/j.cell.2007.03.026openalex-snapshot
A Role for Piwi and piRNAs in Germ Cell Maintenance and Transposon Silencing in Zebrafish
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.08.096openalex-snapshot
Genome-wide Identification and Characterization of a Superfamily of Bacterial Extracellular Contractile Injection Systems
inferred← citeshttps://doi.org/10.1016/j.celrep.2021.110204openalex-snapshot
Discovery, diversity, and functional associations of crAss-like phages in human gut metagenomes from four Dutch cohorts
inferred← citeshttps://doi.org/10.1016/j.cj.2020.08.006openalex-snapshot
Genomic footprints of wheat evolution in China reflected by a Wheat660K SNP array
inferred← citeshttps://doi.org/10.1016/j.cmpb.2014.12.004openalex-snapshot
ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis
inferred← citeshttps://doi.org/10.1016/j.cub.2003.11.025openalex-snapshot
Positive Selection on a Human-Specific Transcription Factor Binding Site Regulating IL4 Expression
inferred← citeshttps://doi.org/10.1016/j.cub.2004.07.029openalex-snapshot
High Coding Density on the Largest Paramecium tetraurelia Somatic Chromosome
inferred← citeshttps://doi.org/10.1016/j.cub.2014.05.044openalex-snapshot
Deep Proteomics of the Xenopus laevis Egg using an mRNA-Derived Reference Database
inferred← citeshttps://doi.org/10.1016/j.cub.2018.05.070openalex-snapshot
Cross-Contamination Explains “Inter and Intraspecific Horizontal Genetic Transfers” between Asexual Bdelloid Rotifers
inferred← citeshttps://doi.org/10.1016/j.cub.2020.04.070openalex-snapshot
Vast Differences in Strain-Level Diversity in the Gut Microbiota of Two Closely Related Honey Bee Species
inferred← citeshttps://doi.org/10.1016/j.dss.2018.10.011openalex-snapshot
Emergence of DSS efforts in genomics: Past contributions and challenges
inferred← citeshttps://doi.org/10.1016/j.eswa.2012.12.088openalex-snapshot
Modelling knowledge strategy for solving the DNA sequence annotation problem through CommonKADS methodology
inferred← citeshttps://doi.org/10.1016/j.febslet.2006.06.015openalex-snapshot
A normalised scale for structural genomics target ranking: The OB‐Score
inferred← citeshttps://doi.org/10.1016/j.febslet.2012.08.030openalex-snapshot
Inhibition of a cold‐active alkaline phosphatase by imipenem revealed by in silico modeling of metallo‐β‐lactamase active sites
inferred← citeshttps://doi.org/10.1016/j.fsi.2016.02.032openalex-snapshot
RNA-Seq analysis of immune-relevant genes in Lateolabrax japonicus during Vibrio anguillarum infection
inferred← citeshttps://doi.org/10.1016/j.fsi.2016.06.051openalex-snapshot
De novo annotation of the immune-enriched transcriptome provides insights into immune system genes of Chinese sturgeon (Acipenser sinensis)
inferred← citeshttps://doi.org/10.1016/j.fsi.2017.08.040openalex-snapshot
Deciphering transcriptome profile of the yellow catfish (Pelteobagrus fulvidraco) in response to Edwardsiella ictaluri
inferred← citeshttps://doi.org/10.1016/j.funeco.2018.10.006openalex-snapshot
Out of western North America: Evolution of the Rhizopogon-Pseudotsuga symbiosis inferred by genome-scale sequence typing
inferred← citeshttps://doi.org/10.1016/j.future.2016.02.010openalex-snapshot
Large-scale biological meta-database management
inferred← citeshttps://doi.org/10.1016/j.gene.2005.05.045openalex-snapshot
Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: The case of primate β3GAL-T5
inferred← citeshttps://doi.org/10.1016/j.gene.2006.07.008openalex-snapshot
Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus
inferred← citeshttps://doi.org/10.1016/j.gene.2006.10.012openalex-snapshot
The contribution of transposable elements to Bos taurus gene structure
inferred← citeshttps://doi.org/10.1016/j.gene.2007.06.029openalex-snapshot
A domain of the thyroid adenoma associated gene (THADA) conserved in vertebrates becomes destroyed by chromosomal rearrangements observed in thyroid adenomas
inferred← citeshttps://doi.org/10.1016/j.gene.2007.12.002openalex-snapshot
The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny
inferred← citeshttps://doi.org/10.1016/j.gene.2010.07.009openalex-snapshot
Detecting novel genes with sparse arrays
inferred← citeshttps://doi.org/10.1016/j.gene.2013.06.063openalex-snapshot
The GAG database: A new resource to gather genomic annotation cross-references
inferred← citeshttps://doi.org/10.1016/j.gene.2013.10.015openalex-snapshot
AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite
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