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Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Nuclear DNA Amounts in Angiosperms
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Evidence that a Recent Increase in Maize Genome Size was Caused by the Massive Amplification of Intergene Retrotransposons
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Phylogenetic Analysis of DNA C-values provides Evidence for a Small Ancestral Genome Size in Flowering Plants
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Mutational Equilibrium Model of Genome Size Evolution
inferredcites →https://doi.org/10.1007/bf00020572openalex-snapshot
Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize
inferredcites →https://doi.org/10.1007/bf00282466openalex-snapshot
The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion
inferredcites →https://doi.org/10.1007/bf00485947openalex-snapshot
Genome size and the proportion of repeated nucleotide sequence DNA in plants
inferredcites →https://doi.org/10.1007/bf02338802openalex-snapshot
Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons
inferredcites →https://doi.org/10.1007/pl00006561openalex-snapshot
Intron–Genome Size Relationship on a Large Evolutionary Scale
inferredcites →https://doi.org/10.1016/0047-2484(91)90069-8openalex-snapshot
Fundamentals of molecular evolution
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Evidence for the smallest nuclear genome (2.9 Mb) in the microsporidium Encephalitozoon cuniculi
inferredcites →https://doi.org/10.1016/j.pbi.2004.01.004openalex-snapshot
Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
inferredcites →https://doi.org/10.1016/j.plantsci.2003.09.016openalex-snapshot
Dissimilar mutation and recombination rates in Arabidopsis and tobacco
inferredcites →https://doi.org/10.1016/s0065-2113(02)78004-8openalex-snapshot
Polyploidy and the evolutionary history of cotton
inferredcites →https://doi.org/10.1016/s0065-2660(08)60515-5openalex-snapshot
Genetics, Cytology, and Evolution of Gossypium
inferredcites →https://doi.org/10.1016/s0166-6851(98)00064-4openalex-snapshot
A small spliceosomal-type intron occurs in a ribosomal protein gene of the microsporidian Encephalitozoon cuniculi1Note: Nucleotide sequence data reported in this paper are available in the EMBL, GenBankTM and DDJB data bases under the accession number AF054829.1
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Duplicate and diverge: the evolution of plant genome microstructure
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Mismatch repair and mutational bias in microsatellite DNA
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Evolution by gene duplication: an update
inferredcites →https://doi.org/10.1016/s0378-1119(97)00516-7openalex-snapshot
Trash DNA is what gets thrown away: high rate of DNA loss in Drosophila
inferredcites →https://doi.org/10.1016/s1055-7903(03)00194-5openalex-snapshot
Evolution of mitochondrial gene content: gene loss and transfer to the nucleus
inferredcites →https://doi.org/10.1023/a:1006344508454openalex-snapshot
Transposable element contributions to plant gene and genome evolution
inferredcites →https://doi.org/10.1023/a:1006392424384openalex-snapshot
Genome evolution in polyploids
inferredcites →https://doi.org/10.1023/a:1014841515249openalex-snapshot
Numerous small rearrangements of gene content, order and orientation differentiate grass genomes
inferredcites →https://doi.org/10.1023/a:1016015913350openalex-snapshot
Mechanisms and rates of genome expansion and contraction in flowering plants
inferredcites →https://doi.org/10.1023/a:1016020030189openalex-snapshot
Feast and famine in plant genomes
inferredcites →https://doi.org/10.1023/a:1016072014259openalex-snapshot
Transposable elements and the evolution of genome size in eukaryotes
inferredcites →https://doi.org/10.1023/a:1016076215168openalex-snapshot
DNA loss and evolution of genome size in Drosophila
inferredcites →https://doi.org/10.1023/a:1022324205661openalex-snapshot
Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: possible implications for genome evolution
inferredcites →https://doi.org/10.1023/a:1025472709537openalex-snapshot
Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis
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The paleontology of intergene retrotransposons of maize
inferredcites →https://doi.org/10.1038/307185a0openalex-snapshot
Similarity of the Cin1 repetitive family of Zea mays to eukaryotic transposable elements
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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
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Chromosome evolution and DNA variation in Crepis
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Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
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Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution
inferredcites →https://doi.org/10.1073/pnas.070430597openalex-snapshot
Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.160271297openalex-snapshot
Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
inferredcites →https://doi.org/10.1073/pnas.95.22.13073openalex-snapshot
Chromosome-specific molecular organization of maize ( Zea mays L.) centromeric regions
inferredcites →https://doi.org/10.1073/pnas.96.13.7409openalex-snapshot
Colinearity and its exceptions in orthologous adh regions of maize and sorghum
inferredcites →https://doi.org/10.1093/aob/mci001openalex-snapshot
Plant Genome Size Research: A Field In Focus
inferredcites →https://doi.org/10.1093/aob/mci008openalex-snapshot
Mechanisms of Recent Genome Size Variation in Flowering Plants
inferredcites →https://doi.org/10.1093/aob/mci078openalex-snapshot
Estimation of the Nuclear DNA Content of Gossypium Species
inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1093openalex-snapshot
DNA sequence quality trimming and vector removal
inferredcites →https://doi.org/10.1093/emboj/19.20.5562openalex-snapshot
Species‐specific double‐strand break repair and genome evolution in plants
inferredcites →https://doi.org/10.1093/genetics/148.1.435openalex-snapshot
Sequence Organization and Conservation in sh2/a1-Homologous Regions of Sorghum and Rice
inferredcites →https://doi.org/10.1093/genetics/68.2.195openalex-snapshot
VARIATION IN NUCLEAR DNA CONTENT IN THE GENUS VICIA
inferredcites →https://doi.org/10.1093/molbev/msi069openalex-snapshot
Structure, Divergence, and Distribution of the CRR Centromeric Retrotransposon Family in Rice
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/24.20.3879openalex-snapshot
Efficient random subcloning of DNA sheared in a recirculating point- sink flow system
inferredcites →https://doi.org/10.1093/nar/27.15.3219openalex-snapshot
Intron—exon structures of eukaryotic model organisms
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004062openalex-snapshot
Intron Size and Genome Size in Plants
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026131openalex-snapshot
Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)
inferredcites →https://doi.org/10.1098/rstb.1976.0044openalex-snapshot
Nuclear DNA amounts in angiosperms
inferredcites →https://doi.org/10.1098/rstb.1991.0120openalex-snapshot
Nuclear DNA amounts in angiosperms
inferredcites →https://doi.org/10.1101/gr.10.7.908openalex-snapshot
A Contiguous 66-kb Barley DNA Sequence Provides Evidence for Reversible Genome Expansion
inferredcites →https://doi.org/10.1101/gr.132102openalex-snapshot
Genome Size Reduction through Illegitimate Recombination Counteracts Genome Expansion in Arabidopsis
inferredcites →https://doi.org/10.1101/gr.1466204openalex-snapshot
Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice
inferredcites →https://doi.org/10.1101/gr.188201openalex-snapshot
Abundance, Distribution, and Transcriptional Activity of Repetitive Elements in the Maize Genome
inferredcites →https://doi.org/10.1101/gr.2673204openalex-snapshot
Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
inferredcites →https://doi.org/10.1101/gr.4100405openalex-snapshot
Differential methylation of genes and repeats in land plants
inferredcites →https://doi.org/10.1101/gr.593403openalex-snapshot
Centromere Satellites From Arabidopsis Populations: Maintenance of Conserved and Variable Domains
inferredcites →https://doi.org/10.1101/gr.8.3.175openalex-snapshot
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
inferredcites →https://doi.org/10.1101/gr.8.5.479openalex-snapshot
Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton
inferredcites →https://doi.org/10.1101/gr.8.8.848openalex-snapshot
An Automated Hydrodynamic Process for Controlled, Unbiased DNA Shearing
inferredcites →https://doi.org/10.1105/tpc.010235openalex-snapshot
Insertion Preference of Maize and Rice Miniature Inverted Repeat Transposable Elements as Revealed by the Analysis of Nested Elements [W]
inferredcites →https://doi.org/10.1105/tpc.011023openalex-snapshot
Rapid Genome Divergence at Orthologous Low Molecular Weight Glutenin Loci of the A and Am Genomes of Wheat[W]
inferredcites →https://doi.org/10.1105/tpc.11.9.1769openalex-snapshot
Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum
inferredcites →https://doi.org/10.1105/tpc.12.7.1021openalex-snapshot
Comparative Sequence Analysis of Plant Nuclear Genomes: Microcolinearity and Its Many Exceptions
inferredcites →https://doi.org/10.1105/tpc.12.7.1093openalex-snapshot
Extensive Duplication and Reshuffling in the Arabidopsis Genome
inferredcites →https://doi.org/10.1105/tpc.9.9.1509openalex-snapshot
Do Plants Have a One-Way Ticket to Genomic Obesity?
inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb00854.xopenalex-snapshot
A BIRD'S-EYE VIEW OF THE C-VALUE ENIGMA: GENOME SIZE, CELL SIZE, AND METABOLIC RATE IN THE CLASS AVES
inferredcites →https://doi.org/10.1126/science.1068037openalex-snapshot
A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )
inferredcites →https://doi.org/10.1126/science.274.5288.765openalex-snapshot
Nested Retrotransposons in the Intergenic Regions of the Maize Genome
inferredcites →https://doi.org/10.1126/science.287.5455.1060openalex-snapshot
Evidence for DNA Loss as a Determinant of Genome Size
inferredcites →https://doi.org/10.1126/science.290.5499.2114openalex-snapshot
The Origins of Genomic Duplications in Arabidopsis
inferredcites →https://doi.org/10.1128/9781555817954.ch49openalex-snapshot
Origins and Evolution of Retrotransposons
inferredcites →https://doi.org/10.1139/g04-034openalex-snapshot
A direct repeat sequence associated with the centromeric retrotransposons in wheat
inferredcites →https://doi.org/10.1146/annurev.ge.05.120171.001321openalex-snapshot
THE GENETIC ORGANIZATION OF CHROMOSOMES
inferredcites →https://doi.org/10.1146/annurev.genet.33.1.479openalex-snapshot
Plant Retrotransposons
inferredcites →https://doi.org/10.1186/gb-2002-3-10-research0053openalex-snapshot
Long terminal repeat retrotransposons of Oryza sativa
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
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Macroevolution, hierarchy theory, and the C-value enigma
inferredcites →https://doi.org/10.22244/rheedea.1992.02.02.04openalex-snapshot
A revised taxonomic interpretation of Gossypium L. (Malvaceae)
inferredcites →https://doi.org/10.2307/2419069openalex-snapshot
Phylogenetics of the Cotton Genus (Gossypium): Character-State Weighted Parsimony Analysis of Chloroplast-DNA Restriction Site Data and Its Systematic and Biogeographic Implications
inferredcites →https://doi.org/10.2307/2419457openalex-snapshot
Congruence and Consensus in the Cotton Tribe (Malvaceae)
inferredcites →https://doi.org/10.2307/2446640openalex-snapshot
The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group
inferredcites →https://doi.org/10.2307/3871594openalex-snapshot
Insertion Preference of Maize and Rice Miniature Inverted Repeat Transposable Elements as Revealed by the Analysis of Nested Elements
inferredcites →https://doi.org/10.3732/ajb.89.4.707openalex-snapshot
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1007/7397_2015_3openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-0-387-70810-2_6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-0-387-77863-1_9openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-2386-1_8openalex-snapshot
Mechanisms of Transposable Element Evolution in Plants and Their Effects on Gene Expression
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Composition and Organization of Major Repeat Components in the Brassica oleracea Genome
inferred← citeshttps://doi.org/10.1007/978-3-030-64504-5_2openalex-snapshot
Evolution and Diversity of the Cotton Genome
inferred← citeshttps://doi.org/10.1007/978-3-030-64504-5_4openalex-snapshot
Cotton Genomes Are Sequenced Due to Their Economic and Agriculture Importance
inferred← citeshttps://doi.org/10.1007/978-3-030-93390-6_3openalex-snapshot
Transposable Elements in Pines
inferred← citeshttps://doi.org/10.1007/978-3-031-84605-2_13openalex-snapshot
B, E, F, G, and K Gossypium spp. Genomes
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Polyploid Speciation and Genome Evolution: Lessons from Recent Allopolyploids
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Transposon Activity in Plant Genomes
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A computational genome-wide analysis of long terminal repeats retrotransposon expression in sunflower roots (Helianthus annuus L.)
inferred← citeshttps://doi.org/10.1007/s10709-020-00094-3openalex-snapshot
Screening diversity and distribution of Copia retrotransposons reveals a specific amplification of BARE1 elements in genomes of the polyploid Hordeum murinum complex
inferred← citeshttps://doi.org/10.1007/s10722-023-01726-1openalex-snapshot
Elucidating the genetic diversity and population structure of international cotton germplasm using inter-primer binding site (iPBS) retrotransposon marker system
inferred← citeshttps://doi.org/10.1007/s11103-009-9542-6openalex-snapshot
An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris
inferred← citeshttps://doi.org/10.1007/s11103-012-9959-1openalex-snapshot
Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection
inferred← citeshttps://doi.org/10.1007/s11105-012-0438-2openalex-snapshot
Microdissection and Microcloning of Chromosome 5 in Gossypium arboreum
inferred← citeshttps://doi.org/10.1007/s11295-011-0421-3openalex-snapshot
A computational study of the dynamics of LTR retrotransposons in the Populus trichocarpa genome
inferred← citeshttps://doi.org/10.1007/s11295-013-0631-yopenalex-snapshot
Isolation, identification, and characterization of genomic LTR retrotransposon sequences from masson pine (Pinus massoniana)
inferred← citeshttps://doi.org/10.1007/s11295-015-0937-zopenalex-snapshot
A survey of Gypsy and Copia LTR-retrotransposon superfamilies and lineages and their distinct dynamics in the Populus trichocarpa (L.) genome
inferred← citeshttps://doi.org/10.1007/s11295-017-1181-5openalex-snapshot
Comparative genome-wide analysis of repetitive DNA in the genus Populus L.
inferred← citeshttps://doi.org/10.1007/s11295-019-1334-9openalex-snapshot
Draft genome of Santalum album L. provides genomic resources for accelerated trait improvement
inferred← citeshttps://doi.org/10.1007/s11295-019-1401-2openalex-snapshot
A computational comparative study of the repetitive DNA in the genus Quercus L
inferred← citeshttps://doi.org/10.1007/s11427-013-4540-yopenalex-snapshot
Systematic analysis of intron size and abundance parameters in diverse lineages
inferred← citeshttps://doi.org/10.1007/s11427-015-4928-yopenalex-snapshot
Transposable elements play an important role during cotton genome evolution and fiber cell development
inferred← citeshttps://doi.org/10.1007/s11427-016-5000-2openalex-snapshot
Transcriptome analysis reveals long noncoding RNAs involved in fiber development in cotton (Gossypium arboreum)
inferred← citeshttps://doi.org/10.1007/s12042-009-9029-2openalex-snapshot
Evolution of Genome size in Hawaiian Endemic Genus Schiedea (Caryophyllaceae)
inferred← citeshttps://doi.org/10.1007/s12224-013-9151-7openalex-snapshot
Substantial Genome Size Variation in Taraxacum stenocephalum (Asteraceae, Lactuceae)
inferred← citeshttps://doi.org/10.1007/s12284-008-9002-yopenalex-snapshot
Rapid and Differential Proliferation of the Ty3-Gypsy LTR Retrotransposon Atlantys in the Genus Oryza
inferred← citeshttps://doi.org/10.1007/s12284-010-9046-7openalex-snapshot
Assessing the Extent of Substitution Rate Variation of Retrotransposon Long Terminal Repeat Sequences in Oryza sativa and Oryza glaberrima
inferred← citeshttps://doi.org/10.1007/s12284-010-9054-7openalex-snapshot
Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents
inferred← citeshttps://doi.org/10.1007/s13237-015-0147-yopenalex-snapshot
Molecular cytogenetic use of BAC clones in Neofinetia falcata and Rhynchostylis coelestis
inferred← citeshttps://doi.org/10.1007/s13258-017-0522-yopenalex-snapshot
The genomes and transposable elements in plants: are they friends or foes?
inferred← citeshttps://doi.org/10.1007/s13258-020-00941-9openalex-snapshot
The C- and G-value paradox with polyploidy, repeatomes, introns, phenomes and cell economy
inferred← citeshttps://doi.org/10.1007/s44281-025-00085-4openalex-snapshot
Genome-wide characterization of LTR retrotransposons provides new insights into missed gene annotation and gene expression effects in pear genomes
inferred← citeshttps://doi.org/10.1007/s44372-025-00389-9openalex-snapshot
Comparative genomics analysis gives insights into differential microsatellite distribution in selected cereals and legumes
inferred← citeshttps://doi.org/10.1016/b978-0-12-417163-3.00006-8openalex-snapshot
Insights into the Common Ancestor of Eudicots
inferred← citeshttps://doi.org/10.1016/b978-0-12-817076-2.00013-5openalex-snapshot
Genomics of algae: Its challenges and applications
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2015.12.005openalex-snapshot
What makes up plant genomes: The vanishing line between transposable elements and genes
inferred← citeshttps://doi.org/10.1016/j.cj.2016.04.001openalex-snapshot
Comprehensive cytological characterization of the Gossypium hirsutum genome based on the development of a set of chromosome cytological markers
inferred← citeshttps://doi.org/10.1016/j.cropd.2026.100132openalex-snapshot
Transposable elements in plants: Silencing, activation and roles
inferred← citeshttps://doi.org/10.1016/j.gene.2010.01.003openalex-snapshot
Jumping genes and epigenetics: Towards new species
inferred← citeshttps://doi.org/10.1016/j.gene.2012.07.042openalex-snapshot
The impact of transposable elements on eukaryotic genomes: From genome size increase to genetic adaptation to stressful environments
inferred← citeshttps://doi.org/10.1016/j.gene.2013.01.034openalex-snapshot
Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae
inferred← citeshttps://doi.org/10.1016/j.gene.2013.09.100openalex-snapshot
Proliferation and copy number variation of BEL-like long terminal repeat retrotransposons within the Diabrotica virgifera virgifera genome
inferred← citeshttps://doi.org/10.1016/j.gene.2014.07.054openalex-snapshot
Genome-wide identification and analysis of the aldehyde dehydrogenase (ALDH) gene superfamily of Gossypium raimondii
inferred← citeshttps://doi.org/10.1016/j.gene.2017.07.034openalex-snapshot
Genome-wide characterization and expression analysis of the aldehyde dehydrogenase ( ALDH ) gene superfamily under abiotic stresses in cotton
inferred← citeshttps://doi.org/10.1016/j.jgg.2017.07.002openalex-snapshot
Cold-induced retrotransposition of fish LINEs
inferred← citeshttps://doi.org/10.1016/j.jhevol.2014.10.014openalex-snapshot
Archaeogenomic insights into the adaptation of plants to the human environment: pushing plant–hominin co-evolution back to the Pliocene
inferred← citeshttps://doi.org/10.1016/j.jia.2024.07.043openalex-snapshot
The Clausena lansium genome provides new insights into alkaloid diversity and the evolution of the methyltransferase family
inferred← citeshttps://doi.org/10.1016/j.margen.2015.10.002openalex-snapshot
Analysis of the repetitive component and retrotransposon population in the genome of a marine angiosperm, Posidonia oceanica (L.) Delile
inferred← citeshttps://doi.org/10.1016/j.margen.2017.05.003openalex-snapshot
Characterization of autonomous families of Tc1/mariner transposons in neoteleost genomes
inferred← citeshttps://doi.org/10.1016/j.pbi.2007.02.001openalex-snapshot
Transposable elements and the plant pan-genomes
inferred← citeshttps://doi.org/10.1016/j.pbi.2016.01.002openalex-snapshot
Has the connection between polyploidy and diversification actually been tested?
inferred← citeshttps://doi.org/10.1016/j.pbi.2019.12.012openalex-snapshot
The current revolution in transposable element biology enabled by long reads
inferred← citeshttps://doi.org/10.1016/j.plantsci.2008.03.015openalex-snapshot
Repeated big bangs and the expanding universe: Directionality in plant genome size evolution
inferred← citeshttps://doi.org/10.1016/j.ppees.2019.03.002openalex-snapshot
Do tropical plants have smaller genomes? Correlation between genome size and climatic variables in the Caesalpinia Group (Caesalpinioideae, Leguminosae)
inferred← citeshttps://doi.org/10.1016/j.rsma.2026.104861openalex-snapshot
Assessing benthic health in Indian coastal waters: Current practices and future needs
inferred← citeshttps://doi.org/10.1016/j.sajb.2017.11.017openalex-snapshot
Nuclear DNA C-values are correlated with pollen size at tetraploid but not diploid level and linked to phylogenetic descent in Streptocarpus (Gesneriaceae)
inferred← citeshttps://doi.org/10.1016/j.scienta.2019.108987openalex-snapshot
Determination of genome size and chromosome ploidy of selected taxa from Prunus armeniaca by flow cytometry
inferred← citeshttps://doi.org/10.1016/j.tplants.2010.05.003openalex-snapshot
A triptych of the evolution of plant transposable elements
inferred← citeshttps://doi.org/10.1016/j.tplants.2014.04.007openalex-snapshot
Polyploidy and small RNA regulation of cotton fiber development
inferred← citeshttps://doi.org/10.1016/j.xgen.2024.100586openalex-snapshot
Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations
inferred← citeshttps://doi.org/10.1016/j.xplc.2022.100350openalex-snapshot
Genome sequence of Gossypium anomalum facilitates interspecific introgression breeding
inferred← citeshttps://doi.org/10.1016/j.ygeno.2011.02.007openalex-snapshot
Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage
inferred← citeshttps://doi.org/10.1016/s2095-3119(21)63827-3openalex-snapshot
Genome-wide identification, evolutionary selection, and genetic variation of DNA methylation-related genes in Brassica rapa and Brassica oleracea
inferred← citeshttps://doi.org/10.1017/cbo9780511541827.008openalex-snapshot
Evolution of the nuclear genome of ferns and lycophytes
inferred← citeshttps://doi.org/10.1017/s1479262117000041openalex-snapshot
Assessing genetic diversity of potato genotypes using inter-PBS retrotransposon marker system
inferred← citeshttps://doi.org/10.1038/hdy.2009.182openalex-snapshot
Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species
inferred← citeshttps://doi.org/10.1038/hdy.2009.192openalex-snapshot
Gene copy number evolution during tetraploid cotton radiation
inferred← citeshttps://doi.org/10.1038/hdy.2011.111openalex-snapshot
Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types
inferred← citeshttps://doi.org/10.1038/hdy.2012.99openalex-snapshot
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution
inferred← citeshttps://doi.org/10.1038/nature08351openalex-snapshot
Bursts of retrotransposition reproduced in Arabidopsis
inferred← citeshttps://doi.org/10.1038/nature12211openalex-snapshot
The Norway spruce genome sequence and conifer genome evolution
inferred← citeshttps://doi.org/10.1038/ng.2371openalex-snapshot
The draft genome of a diploid cotton Gossypium raimondii
inferred← citeshttps://doi.org/10.1038/ng.2987openalex-snapshot
Genome sequence of the cultivated cotton Gossypium arboreum
inferred← citeshttps://doi.org/10.1038/nrg2072openalex-snapshot
Transposable elements and the epigenetic regulation of the genome
inferred← citeshttps://doi.org/10.1038/s41437-021-00443-8openalex-snapshot
Repetitive genomic regions and the inference of demographic history
inferred← citeshttps://doi.org/10.1038/s41588-022-01237-2openalex-snapshot
Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium
inferred← citeshttps://doi.org/10.1038/s41588-024-01877-6openalex-snapshot
A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development
inferred← citeshttps://doi.org/10.1038/s41588-024-01964-8openalex-snapshot
Convergence and divergence of diploid and tetraploid cotton genomes
inferred← citeshttps://doi.org/10.1038/s41588-025-02130-4openalex-snapshot
A telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation
inferred← citeshttps://doi.org/10.1038/s41598-017-18048-9openalex-snapshot
Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution
inferred← citeshttps://doi.org/10.1038/s41598-018-23846-wopenalex-snapshot
Genome-wide comparative and evolutionary analysis of Calmodulin-binding Transcription Activator (CAMTA) family in Gossypium species
inferred← citeshttps://doi.org/10.1038/s41598-018-27589-6openalex-snapshot
Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species
inferred← citeshttps://doi.org/10.1038/s41598-019-39274-3openalex-snapshot
Genome analysis of the rice coral Montipora capitata
inferred← citeshttps://doi.org/10.1038/s41598-019-53968-8openalex-snapshot
The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly
inferred← citeshttps://doi.org/10.1038/s42003-018-0089-4openalex-snapshot
De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution
inferred← citeshttps://doi.org/10.1038/srep14139openalex-snapshot
Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites
inferred← citeshttps://doi.org/10.1038/srep17662openalex-snapshot
The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres
inferred← citeshttps://doi.org/10.1071/bt07030openalex-snapshot
Copia retrotransposons of two disjunctive Panax species: P. ginseng and P. quinquefolius
inferred← citeshttps://doi.org/10.1073/pnas.0605618103openalex-snapshot
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
inferred← citeshttps://doi.org/10.1073/pnas.0805694105openalex-snapshot
Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations
inferred← citeshttps://doi.org/10.1073/pnas.0904339106openalex-snapshot
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
inferred← citeshttps://doi.org/10.1073/pnas.1018222108openalex-snapshot
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1080/07352689.2018.1482364openalex-snapshot
When Less is More: Red Algae as Models for Studying Gene Loss and Genome Evolution in Eukaryotes
inferred← citeshttps://doi.org/10.1080/17550874.2012.716868openalex-snapshot
Why size really matters when sequencing plant genomes
inferred← citeshttps://doi.org/10.1093/aob/mcab102openalex-snapshot
The nature of intraspecific and interspecific genome size variation in taxonomically complex eyebrights
inferred← citeshttps://doi.org/10.1093/aob/mcm307openalex-snapshot
Genome Size and GC Content Evolution of Festuca: Ancestral Expansion and Subsequent Reduction
inferred← citeshttps://doi.org/10.1093/aob/mcq235openalex-snapshot
Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies
inferred← citeshttps://doi.org/10.1093/aob/mcs187openalex-snapshot
Cytogeography and genome size variation in the Claytonia perfoliata (Portulacaceae) polyploid complex
inferred← citeshttps://doi.org/10.1093/aob/mcs222openalex-snapshot
New reports of nuclear DNA content for 407 vascular plant taxa from the United States
inferred← citeshttps://doi.org/10.1093/aobpla/pls006openalex-snapshot
Genome size in Anthurium evaluated in the context of karyotypes and phenotypes
inferred← citeshttps://doi.org/10.1093/database/bax013openalex-snapshot
GrTEdb: the first web-based database of transposable elements in cotton (Gossypium raimondii)
inferred← citeshttps://doi.org/10.1093/database/bay078openalex-snapshot
PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants
inferred← citeshttps://doi.org/10.1093/dnares/dsaa004openalex-snapshot
Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrus
inferred← citeshttps://doi.org/10.1093/dnares/dsu042openalex-snapshot
LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome
inferred← citeshttps://doi.org/10.1093/evolinnean/kzae005openalex-snapshot
Consistent accumulation of transposable elements in species of the Hawaiian Tetragnatha spiny-leg adaptive radiation across the archipelago chronosequence
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf020openalex-snapshot
Genomes of the Caribbean reef-building corals Colpophyllia natans , Dendrogyra cylindrus , and Siderastrea siderea
inferred← citeshttps://doi.org/10.1093/gbe/evaa034openalex-snapshot
Traveler, a New DD35E Family of Tc1/Mariner Transposons, Invaded Vertebrates Very Recently
inferred← citeshttps://doi.org/10.1093/gbe/evaa084openalex-snapshot
Paternally Inherited P-Element Copy Number Affects the Magnitude of Hybrid Dysgenesis in Drosophila simulans and D. melanogaster
inferred← citeshttps://doi.org/10.1093/gbe/evab168openalex-snapshot
Distinct Retrotransposon Evolution Profile in the Genome of Rabbit (Oryctolagus cuniculus)
inferred← citeshttps://doi.org/10.1093/gbe/evac170openalex-snapshot
Dual Domestication, Diversity, and Differential Introgression in Old World Cotton Diploids
inferred← citeshttps://doi.org/10.1093/gbe/evae109openalex-snapshot
Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evq005openalex-snapshot
Paleogenomic Analysis of the Short Arm of Chromosome 3 Reveals the History of the African and Asian Progenitors of Cultivated Rices
inferred← citeshttps://doi.org/10.1093/gbe/evr008openalex-snapshot
Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
inferred← citeshttps://doi.org/10.1093/gbe/evr090openalex-snapshot
Comparative Analysis of Teleost Genome Sequences Reveals an Ancient Intron Size Expansion in the Zebrafish Lineage
inferred← citeshttps://doi.org/10.1093/gbe/evr139openalex-snapshot
LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders
inferred← citeshttps://doi.org/10.1093/gbe/evt025openalex-snapshot
Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evt141openalex-snapshot
Transposable Elements: Powerful Contributors to Angiosperm Evolution and Diversity
inferred← citeshttps://doi.org/10.1093/gbe/evt196openalex-snapshot
Composition and Expression of Conserved MicroRNA Genes in Diploid Cotton (Gossypium) Species
inferred← citeshttps://doi.org/10.1093/gbe/evw129openalex-snapshot
Independent Domestication of Two Old World Cotton Species
inferred← citeshttps://doi.org/10.1093/gbe/evx248openalex-snapshot
Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing
inferred← citeshttps://doi.org/10.1093/gbe/evx276openalex-snapshot
Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
inferred← citeshttps://doi.org/10.1093/gbe/evy256openalex-snapshot
Insights into the Evolution of the New World Diploid Cottons (Gossypium, SubgenusHouzingenia) Based on Genome Sequencing
inferred← citeshttps://doi.org/10.1093/molbev/msab128openalex-snapshot
Comparative Genome Analyses Highlight Transposon-Mediated Genome Expansion and the Evolutionary Architecture of 3D Genomic Folding in Cotton
inferred← citeshttps://doi.org/10.1093/molbev/msaf247openalex-snapshot
Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns
inferred← citeshttps://doi.org/10.1093/molbev/msn085openalex-snapshot
A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus
inferred← citeshttps://doi.org/10.1093/molbev/msq282openalex-snapshot
Genetic Diversity of the Allodeterminant alr2 in Hydractinia symbiolongicarpus
inferred← citeshttps://doi.org/10.1093/molbev/mss070openalex-snapshot
Archaeogenomic Evidence of Punctuated Genome Evolution in Gossypium
inferred← citeshttps://doi.org/10.1093/molbev/msy081openalex-snapshot
Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta
inferred← citeshttps://doi.org/10.1093/nar/gkq524openalex-snapshot
Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors
inferred← citeshttps://doi.org/10.1093/nar/gkr179openalex-snapshot
Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes
inferred← citeshttps://doi.org/10.1093/plcell/koac249openalex-snapshot
The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome
inferred← citeshttps://doi.org/10.1098/rstb.2013.0377openalex-snapshot
Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops
inferred← citeshttps://doi.org/10.1101/2023.09.25.559196openalex-snapshot
Transposition of HOPPLA in siRNA-deficient plants suggests a limited effect of the environment on retrotransposon mobility in Brachypodium distachyon
inferred← citeshttps://doi.org/10.1101/2024.01.03.574070openalex-snapshot
Consistent accumulation of transposable elements in species of the Hawaiian Tetragnatha spiny-leg adaptive radiation across the archipelago chronosequence
inferred← citeshttps://doi.org/10.1101/2025.01.22.633974openalex-snapshot
Extensive genome evolution distinguishes maize within a stable tribe of grasses
inferred← citeshttps://doi.org/10.1101/gad.183871.111openalex-snapshot
Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1101/gr.083360.108openalex-snapshot
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
inferred← citeshttps://doi.org/10.1101/gr.091678.109openalex-snapshot
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
inferred← citeshttps://doi.org/10.1104/pp.107.107672openalex-snapshot
Toward Sequencing Cotton ( Gossypium ) Genomes: Figure 1.
inferred← citeshttps://doi.org/10.1104/pp.109.143370openalex-snapshot
Computational Finishing of Large Sequence Contigs Reveals Interspersed Nested Repeats and Gene Islands in the rf1-Associated Region of Maize
inferred← citeshttps://doi.org/10.1104/pp.112.205245openalex-snapshot
Characteristics and Significance of Intergenic Polyadenylated RNA Transcription in Arabidopsis
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