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Genomics Methods for Xenopus Embryos and Tissues

https://doi.org/10.1101/pdb.top097915
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.celrep.2013.08.012openalex-snapshot
In Vivo T-Box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuromesodermal Bipotency
inferredcites →https://doi.org/10.1016/j.celrep.2019.05.013openalex-snapshot
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation
inferredcites →https://doi.org/10.1016/j.copbio.2018.01.023openalex-snapshot
Computational methods for analyzing genome-wide chromosome conformation capture data
inferredcites →https://doi.org/10.1016/j.devcel.2009.08.005openalex-snapshot
A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos
inferredcites →https://doi.org/10.1016/j.ydbio.2017.02.019openalex-snapshot
Transcriptomic insights into genetic diversity of protein-coding genes in X. laevis
inferredcites →https://doi.org/10.1016/j.ydbio.2019.03.015openalex-snapshot
A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
inferredcites →https://doi.org/10.1038/550451aopenalex-snapshot
The Human Cell Atlas: from vision to reality
inferredcites →https://doi.org/10.1038/nature11212openalex-snapshot
An expansive human regulatory lexicon encoded in transcription factor footprints
inferredcites →https://doi.org/10.1038/nature19840openalex-snapshot
Genome evolution in the allotetraploid frog Xenopus laevis
inferredcites →https://doi.org/10.1038/nature25981openalex-snapshot
The cis-regulatory dynamics of embryonic development at single-cell resolution
inferredcites →https://doi.org/10.1038/nbt.2057openalex-snapshot
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
inferredcites →https://doi.org/10.1038/ncomms10148openalex-snapshot
Embryonic transcription is controlled by maternally defined chromatin state
inferredcites →https://doi.org/10.1038/ncomms5322openalex-snapshot
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification
inferredcites →https://doi.org/10.1038/ncomms7178openalex-snapshot
Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/s41467-018-07771-0openalex-snapshot
A rapid and robust method for single cell chromatin accessibility profiling
inferredcites →https://doi.org/10.1038/s41467-019-09982-5openalex-snapshot
CUT&Tag for efficient epigenomic profiling of small samples and single cells
inferredcites →https://doi.org/10.1101/gad.16800511openalex-snapshot
HEB and E2A function as SMAD/FOXH1 cofactors
inferredcites →https://doi.org/10.1101/gr.111724.110openalex-snapshot
Nucleotide composition-linked divergence of vertebrate core promoter architecture
inferredcites →https://doi.org/10.1101/gr.112656.110openalex-snapshot
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
inferredcites →https://doi.org/10.1101/pdb.prot097907openalex-snapshot
ChIP-Sequencing in Xenopus Embryos
inferredcites →https://doi.org/10.1101/pdb.prot098327openalex-snapshot
Assay for Transposase-Accessible Chromatin-Sequencing Using Xenopus Embryos
inferredcites →https://doi.org/10.1101/pdb.prot098335openalex-snapshot
DNase-seq to Study Chromatin Accessibility in Early Xenopus tropicalis Embryos
inferredcites →https://doi.org/10.1101/pdb.prot098343openalex-snapshot
Generating a Three-Dimensional Genome from Xenopus with Hi-C
inferredcites →https://doi.org/10.1101/pdb.prot100263openalex-snapshot
Mapping Chromatin Features of Xenopus Embryos
inferredcites →https://doi.org/10.1101/pdb.prot5384openalex-snapshot
DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells
inferredcites →https://doi.org/10.1101/pdb.top098350openalex-snapshot
Transcriptomics and Proteomics Methods for Xenopus Embryos and Tissues
inferredcites →https://doi.org/10.1126/science.1183670openalex-snapshot
The Genome of the Western Clawed Frog Xenopus tropicalis
inferredcites →https://doi.org/10.1126/science.aar5780openalex-snapshot
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
inferredcites →https://doi.org/10.1186/s13059-017-1335-7openalex-snapshot
Regulatory remodeling in the allo-tetraploid frog Xenopus laevis
inferredcites →https://doi.org/10.1242/dev.107227openalex-snapshot
Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program
inferredcites →https://doi.org/10.1242/dev.121871openalex-snapshot
Prdm12 specifies V1 interneurons through cross-repressive interactions with Dbx1 and Nkx6 genes in Xenopus
inferredcites →https://doi.org/10.1242/dev.131664openalex-snapshot
Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β‑catenin recruitment
inferredcites →https://doi.org/10.1371/journal.pgen.1006538openalex-snapshot
Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted
Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
inferred← citeshttps://doi.org/10.1101/2023.08.30.555543openalex-snapshot
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
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